Wall clock time and date at job start Tue Mar 31 2020 12:36:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47206 * 2 1
4 4 N 1.46509 * 109.46893 * 240.00142 * 2 1 3
5 5 C 1.34771 * 119.99585 * 85.00203 * 4 2 1
6 6 O 1.21581 * 120.00587 * 0.02562 * 5 4 2
7 7 C 1.47646 * 119.99512 * 179.97438 * 5 4 2
8 8 C 1.40008 * 119.89732 * 359.73277 * 7 5 4
9 9 C 1.36319 * 120.10856 * 179.71640 * 8 7 5
10 10 C 1.40889 * 119.89036 * 0.56910 * 9 8 7
11 11 C 1.41110 * 120.10217 * 179.71912 * 10 9 8
12 12 H 1.07996 * 120.00216 * 330.13769 * 11 10 9
13 13 C 1.40229 * 119.99765 * 150.13235 * 11 10 9
14 14 N 1.30634 * 119.99988 * 161.74754 * 13 11 10
15 15 Si 1.86804 * 119.99996 * 341.74977 * 13 11 10
16 16 H 1.48502 * 109.47140 * 95.41197 * 15 13 11
17 17 H 1.48501 * 109.47106 * 215.41199 * 15 13 11
18 18 H 1.48507 * 109.46970 * 335.41181 * 15 13 11
19 19 C 1.40889 * 119.79069 * 359.70495 * 10 9 8
20 20 C 1.36320 * 119.89332 * 359.97438 * 19 10 9
21 21 C 1.53002 * 109.47131 * 120.00296 * 2 1 3
22 22 H 1.08998 * 109.46780 * 179.97438 * 21 2 1
23 23 C 1.53000 * 109.47005 * 59.99965 * 21 2 1
24 24 C 1.52998 * 109.47170 * 180.02562 * 23 21 2
25 25 C 1.53001 * 109.46999 * 59.99544 * 24 23 21
26 26 C 1.53000 * 109.47532 * 300.00234 * 25 24 23
27 27 H 1.09000 * 109.47474 * 180.02562 * 26 25 24
28 28 C 1.53002 * 109.47205 * 300.00191 * 26 25 24
29 29 C 1.52998 * 109.47170 * 59.99871 * 26 25 24
30 30 H 1.09005 * 109.46878 * 59.99663 * 1 2 3
31 31 H 1.08998 * 109.47183 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46965 * 300.00002 * 1 2 3
33 33 H 0.97000 * 120.00053 * 264.99588 * 4 2 1
34 34 H 1.08004 * 119.94431 * 359.97438 * 8 7 5
35 35 H 1.08005 * 120.05349 * 180.29974 * 9 8 7
36 36 H 0.97005 * 120.00239 * 180.02562 * 14 13 11
37 37 H 1.08004 * 120.05143 * 180.02562 * 19 10 9
38 38 H 1.07998 * 119.94488 * 180.02562 * 20 19 10
39 39 H 1.09006 * 109.47182 * 300.00227 * 23 21 2
40 40 H 1.09000 * 109.47474 * 60.00064 * 23 21 2
41 41 H 1.09000 * 109.47482 * 179.97438 * 24 23 21
42 42 H 1.09006 * 109.47001 * 300.00028 * 24 23 21
43 43 H 1.08998 * 109.47274 * 60.00812 * 25 24 23
44 44 H 1.09005 * 109.46921 * 180.02562 * 25 24 23
45 45 H 1.09000 * 109.46965 * 59.99614 * 28 26 25
46 46 H 1.09000 * 109.47206 * 179.97438 * 28 26 25
47 47 H 1.09005 * 109.46878 * 299.99954 * 28 26 25
48 48 H 1.09000 * 109.47482 * 180.02562 * 29 26 25
49 49 H 1.09006 * 109.47001 * 59.99972 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1963
5 6 2.1470 -0.0182 -2.3571
6 8 1.8584 1.1616 -2.4116
7 6 2.6397 -0.7141 -3.5625
8 6 2.9778 -2.0711 -3.4958
9 6 3.4276 -2.7192 -4.6075
10 6 3.5634 -2.0184 -5.8221
11 6 4.0342 -2.6835 -6.9741
12 1 4.7182 -3.5135 -6.8768
13 6 3.6138 -2.2667 -8.2453
14 7 4.2919 -2.6177 -9.3052
15 14 2.0840 -1.2094 -8.4231
16 1 2.4756 0.2218 -8.4825
17 1 1.3689 -1.5792 -9.6710
18 1 1.1913 -1.4304 -7.2570
19 6 3.2273 -0.6515 -5.8829
20 6 2.7721 -0.0135 -4.7675
21 6 2.0400 -0.7213 1.2492
22 1 3.1300 -0.7217 1.2489
23 6 1.5300 -2.1638 1.2491
24 6 2.0395 -2.8850 2.4986
25 6 1.5290 -2.1635 3.7476
26 6 2.0390 -0.7210 3.7477
27 1 1.6758 -0.2072 4.6377
28 6 3.5691 -0.7210 3.7482
29 6 1.5296 0.0001 2.4982
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.2491 -1.6318 -1.1527
34 1 2.8781 -2.6062 -2.5629
35 1 3.6835 -3.7673 -4.5561
36 1 4.0013 -2.3291 -10.1846
37 1 3.3294 -0.1103 -6.8119
38 1 2.5139 1.0341 -4.8133
39 1 0.4400 -2.1638 1.2491
40 1 1.8933 -2.6776 0.3591
41 1 1.6758 -3.9125 2.4988
42 1 3.1295 -2.8850 2.4991
43 1 0.4390 -2.1635 3.7472
44 1 1.8924 -2.6771 4.6378
45 1 3.9327 -1.2350 2.8584
46 1 3.9324 0.3066 3.7478
47 1 3.9320 -1.2348 4.6384
48 1 1.8933 1.0277 2.4980
49 1 0.4395 0.0001 2.4977
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000456996021.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:36
Heat of formation + Delta-G solvation = -56.258226 kcal
Electronic energy + Delta-G solvation = -26382.283809 eV
Core-core repulsion = 22886.069123 eV
Total energy + Delta-G solvation = -3496.214687 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.18262 -38.89195 -37.35558 -35.29798 -33.85557 -32.04278 -31.78129 -30.50652
-29.88171 -28.57640 -27.01786 -25.93274 -24.11932 -22.67629 -22.03346 -21.38466
-20.18896 -19.63676 -18.55551 -17.63394 -17.34669 -15.96508 -15.46630 -15.36858
-14.97452 -14.74918 -14.37134 -14.18192 -14.03883 -13.74506 -13.62754 -13.28264
-13.05404 -12.79436 -12.62148 -12.46540 -12.45417 -12.30848 -11.95445 -11.87996
-11.83233 -11.67928 -11.19974 -11.07252 -10.97488 -10.93448 -10.84880 -10.46569
-10.39595 -10.22248 -10.13282 -10.05325 -9.70795 -9.33689 -9.04582 -8.65775
-7.94098 -7.74295 -7.21174 -4.72484 2.02876 2.66459 3.00543 3.11771
3.20991 3.69974 3.70648 3.84554 4.42469 4.44940 4.49378 4.51383
4.88302 4.97091 5.05040 5.13346 5.16950 5.29677 5.31687 5.37800
5.43890 5.46819 5.51099 5.58335 5.64076 5.74620 5.77695 5.77901
5.84915 5.88318 5.95340 5.97618 6.02747 6.05841 6.08732 6.14388
6.25596 6.27515 6.41526 6.46348 6.66533 6.69401 6.92673 6.99052
7.26958 7.40259 7.50843 7.70801 7.90731 8.11470 8.15040 8.44755
8.55700 8.98816 9.78408
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.026168 B = 0.002752 C = 0.002622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1069.748630 B =10171.182281 C =10675.132243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.149 3.851
3 H 0.082 0.918
4 N -0.736 5.736
5 C 0.572 3.428
6 O -0.572 6.572
7 C -0.285 4.285
8 C -0.044 4.044
9 C -0.218 4.218
10 C 0.107 3.893
11 C -0.426 4.426
12 H 0.096 0.904
13 C 0.083 3.917
14 N -0.787 5.787
15 Si 0.915 3.085
16 H -0.266 1.266
17 H -0.288 1.288
18 H -0.241 1.241
19 C -0.252 4.252
20 C -0.009 4.009
21 C -0.095 4.095
22 H 0.078 0.922
23 C -0.118 4.118
24 C -0.121 4.121
25 C -0.114 4.114
26 C -0.091 4.091
27 H 0.067 0.933
28 C -0.152 4.152
29 C -0.108 4.108
30 H 0.059 0.941
31 H 0.057 0.943
32 H 0.061 0.939
33 H 0.395 0.605
34 H 0.093 0.907
35 H 0.104 0.896
36 H 0.291 0.709
37 H 0.104 0.896
38 H 0.105 0.895
39 H 0.068 0.932
40 H 0.061 0.939
41 H 0.060 0.940
42 H 0.065 0.935
43 H 0.060 0.940
44 H 0.058 0.942
45 H 0.062 0.938
46 H 0.052 0.948
47 H 0.050 0.950
48 H 0.063 0.937
49 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.125 -0.016 20.680 21.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.044 3.956
3 H 0.100 0.900
4 N -0.389 5.389
5 C 0.366 3.634
6 O -0.454 6.454
7 C -0.289 4.289
8 C -0.063 4.063
9 C -0.237 4.237
10 C 0.103 3.897
11 C -0.452 4.452
12 H 0.114 0.886
13 C -0.140 4.140
14 N -0.409 5.409
15 Si 0.740 3.260
16 H -0.191 1.191
17 H -0.215 1.215
18 H -0.164 1.164
19 C -0.271 4.271
20 C -0.028 4.028
21 C -0.114 4.114
22 H 0.096 0.904
23 C -0.155 4.155
24 C -0.159 4.159
25 C -0.151 4.151
26 C -0.109 4.109
27 H 0.085 0.915
28 C -0.210 4.210
29 C -0.146 4.146
30 H 0.078 0.922
31 H 0.076 0.924
32 H 0.080 0.920
33 H 0.231 0.769
34 H 0.111 0.889
35 H 0.122 0.878
36 H 0.102 0.898
37 H 0.122 0.878
38 H 0.123 0.877
39 H 0.087 0.913
40 H 0.080 0.920
41 H 0.078 0.922
42 H 0.083 0.917
43 H 0.079 0.921
44 H 0.077 0.923
45 H 0.081 0.919
46 H 0.072 0.928
47 H 0.070 0.930
48 H 0.082 0.918
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -5.236 0.763 20.354 21.031
hybrid contribution -0.387 -0.109 -0.304 0.504
sum -5.624 0.654 20.050 20.834
Atomic orbital electron populations
1.22281 0.96035 1.01938 1.02081 1.20794 0.93760 0.97142 0.83896
0.89950 1.46036 1.69430 1.13931 1.09545 1.18499 0.75931 0.86040
0.82908 1.90640 1.52840 1.16412 1.85476 1.18937 1.21116 0.95073
0.93799 1.20439 0.96221 0.92998 0.96629 1.20689 1.10501 0.98728
0.93816 1.17850 0.87489 0.91095 0.93259 1.19745 1.22379 1.14172
0.88925 0.88614 1.26357 0.98227 0.94114 0.95266 1.69601 1.35239
1.35547 1.00473 0.86237 0.81421 0.79660 0.78650 1.19142 1.21517
1.16369 1.20749 1.13267 0.95215 0.97917 1.20413 0.92812 0.98040
0.91550 1.21453 1.00971 0.95098 0.93837 0.90353 1.21656 1.01249
0.94952 0.97676 1.21570 1.01079 0.98687 0.94516 1.21559 1.00451
0.95308 0.97792 1.21086 0.95953 0.95994 0.97879 0.91461 1.21959
0.95372 1.01713 1.01915 1.21627 1.00898 0.98814 0.93248 0.92205
0.92426 0.92019 0.76907 0.88854 0.87779 0.89819 0.87834 0.87656
0.91348 0.92037 0.92151 0.91668 0.92104 0.92308 0.91865 0.92841
0.93050 0.91807 0.91372
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.00 8.78 37.16 0.33 -1.68 16
2 C 0.15 1.93 2.40 -67.92 -0.16 1.76 16
3 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16
4 N -0.74 -11.28 4.95 -54.80 -0.27 -11.55 16
5 C 0.57 11.46 7.73 -12.42 -0.10 11.37 16
6 O -0.57 -13.05 15.98 5.29 0.08 -12.97 16
7 C -0.28 -6.12 5.89 -104.73 -0.62 -6.74 16
8 C -0.04 -0.87 9.47 -39.61 -0.38 -1.25 16
9 C -0.22 -4.77 9.73 -39.27 -0.38 -5.15 16
10 C 0.11 2.60 5.11 -106.80 -0.55 2.05 16
11 C -0.43 -10.86 9.56 -37.75 -0.36 -11.22 16
12 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16
13 C 0.08 2.06 5.40 -17.31 -0.09 1.97 16
14 N -0.79 -19.74 13.92 55.56 0.77 -18.96 16
15 Si 0.91 20.12 24.52 -169.99 -4.17 15.95 16
16 H -0.27 -5.73 6.71 56.52 0.38 -5.36 16
17 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16
18 H -0.24 -5.50 6.87 56.52 0.39 -5.11 16
19 C -0.25 -6.05 7.11 -39.27 -0.28 -6.33 16
20 C -0.01 -0.21 9.52 -39.61 -0.38 -0.58 16
21 C -0.09 -0.93 1.91 -90.62 -0.17 -1.10 16
22 H 0.08 0.82 6.43 -51.93 -0.33 0.48 16
23 C -0.12 -1.05 4.68 -26.73 -0.13 -1.18 16
24 C -0.12 -0.95 5.65 -26.73 -0.15 -1.10 16
25 C -0.11 -0.82 5.45 -26.73 -0.15 -0.97 16
26 C -0.09 -0.68 3.19 -90.62 -0.29 -0.97 16
27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
28 C -0.15 -1.16 8.50 37.16 0.32 -0.84 16
29 C -0.11 -0.91 4.38 -26.73 -0.12 -1.03 16
30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16
32 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16
33 H 0.39 5.33 4.87 -40.82 -0.20 5.13 16
34 H 0.09 1.50 6.37 -52.48 -0.33 1.16 16
35 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16
36 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16
37 H 0.10 2.46 4.72 -52.48 -0.25 2.21 16
38 H 0.11 2.37 7.63 -52.49 -0.40 1.96 16
39 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16
40 H 0.06 0.58 6.51 -51.93 -0.34 0.24 16
41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
42 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16
43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16
46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
47 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
49 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16
LS Contribution 365.12 15.07 5.50 5.50
Total: -1.00 -27.69 365.12 -9.29 -36.98
By element:
Atomic # 1 Polarization: 15.60 SS G_CDS: -7.56 Total: 8.03 kcal
Atomic # 6 Polarization: -19.34 SS G_CDS: -3.65 Total: -22.99 kcal
Atomic # 7 Polarization: -31.02 SS G_CDS: 0.50 Total: -30.52 kcal
Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal
Atomic # 14 Polarization: 20.12 SS G_CDS: -4.17 Total: 15.95 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -27.69 -9.29 -36.98 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000456996021.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.274 kcal
(2) G-P(sol) polarization free energy of solvation -27.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.967 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds