Wall clock time and date at job start Tue Mar 31 2020 12:36:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47206 * 2 1
4 4 N 1.46509 * 109.46893 * 240.00142 * 2 1 3
5 5 C 1.34771 * 119.99585 * 85.00203 * 4 2 1
6 6 O 1.21581 * 120.00587 * 0.02562 * 5 4 2
7 7 C 1.47646 * 119.99512 * 179.97438 * 5 4 2
8 8 C 1.40008 * 119.89732 * 359.73277 * 7 5 4
9 9 C 1.36319 * 120.10856 * 179.71640 * 8 7 5
10 10 C 1.40889 * 119.89036 * 0.56910 * 9 8 7
11 11 C 1.41110 * 120.10217 * 179.71912 * 10 9 8
12 12 H 1.07996 * 120.00216 * 330.13769 * 11 10 9
13 13 C 1.40229 * 119.99765 * 150.13235 * 11 10 9
14 14 N 1.30634 * 119.99988 * 161.74754 * 13 11 10
15 15 Si 1.86804 * 119.99996 * 341.74977 * 13 11 10
16 16 H 1.48502 * 109.47140 * 95.41197 * 15 13 11
17 17 H 1.48501 * 109.47106 * 215.41199 * 15 13 11
18 18 H 1.48507 * 109.46970 * 335.41181 * 15 13 11
19 19 C 1.40889 * 119.79069 * 359.70495 * 10 9 8
20 20 C 1.36320 * 119.89332 * 359.97438 * 19 10 9
21 21 C 1.53002 * 109.47131 * 120.00296 * 2 1 3
22 22 H 1.08998 * 109.46780 * 179.97438 * 21 2 1
23 23 C 1.53000 * 109.47005 * 59.99965 * 21 2 1
24 24 C 1.52998 * 109.47170 * 180.02562 * 23 21 2
25 25 C 1.53001 * 109.46999 * 59.99544 * 24 23 21
26 26 C 1.53000 * 109.47532 * 300.00234 * 25 24 23
27 27 H 1.09000 * 109.47474 * 180.02562 * 26 25 24
28 28 C 1.53002 * 109.47205 * 300.00191 * 26 25 24
29 29 C 1.52998 * 109.47170 * 59.99871 * 26 25 24
30 30 H 1.09005 * 109.46878 * 59.99663 * 1 2 3
31 31 H 1.08998 * 109.47183 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46965 * 300.00002 * 1 2 3
33 33 H 0.97000 * 120.00053 * 264.99588 * 4 2 1
34 34 H 1.08004 * 119.94431 * 359.97438 * 8 7 5
35 35 H 1.08005 * 120.05349 * 180.29974 * 9 8 7
36 36 H 0.97005 * 120.00239 * 180.02562 * 14 13 11
37 37 H 1.08004 * 120.05143 * 180.02562 * 19 10 9
38 38 H 1.07998 * 119.94488 * 180.02562 * 20 19 10
39 39 H 1.09006 * 109.47182 * 300.00227 * 23 21 2
40 40 H 1.09000 * 109.47474 * 60.00064 * 23 21 2
41 41 H 1.09000 * 109.47482 * 179.97438 * 24 23 21
42 42 H 1.09006 * 109.47001 * 300.00028 * 24 23 21
43 43 H 1.08998 * 109.47274 * 60.00812 * 25 24 23
44 44 H 1.09005 * 109.46921 * 180.02562 * 25 24 23
45 45 H 1.09000 * 109.46965 * 59.99614 * 28 26 25
46 46 H 1.09000 * 109.47206 * 179.97438 * 28 26 25
47 47 H 1.09005 * 109.46878 * 299.99954 * 28 26 25
48 48 H 1.09000 * 109.47482 * 180.02562 * 29 26 25
49 49 H 1.09006 * 109.47001 * 59.99972 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1963
5 6 2.1470 -0.0182 -2.3571
6 8 1.8584 1.1616 -2.4116
7 6 2.6397 -0.7141 -3.5625
8 6 2.9778 -2.0711 -3.4958
9 6 3.4276 -2.7192 -4.6075
10 6 3.5634 -2.0184 -5.8221
11 6 4.0342 -2.6835 -6.9741
12 1 4.7182 -3.5135 -6.8768
13 6 3.6138 -2.2667 -8.2453
14 7 4.2919 -2.6177 -9.3052
15 14 2.0840 -1.2094 -8.4231
16 1 2.4756 0.2218 -8.4825
17 1 1.3689 -1.5792 -9.6710
18 1 1.1913 -1.4304 -7.2570
19 6 3.2273 -0.6515 -5.8829
20 6 2.7721 -0.0135 -4.7675
21 6 2.0400 -0.7213 1.2492
22 1 3.1300 -0.7217 1.2489
23 6 1.5300 -2.1638 1.2491
24 6 2.0395 -2.8850 2.4986
25 6 1.5290 -2.1635 3.7476
26 6 2.0390 -0.7210 3.7477
27 1 1.6758 -0.2072 4.6377
28 6 3.5691 -0.7210 3.7482
29 6 1.5296 0.0001 2.4982
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.2491 -1.6318 -1.1527
34 1 2.8781 -2.6062 -2.5629
35 1 3.6835 -3.7673 -4.5561
36 1 4.0013 -2.3291 -10.1846
37 1 3.3294 -0.1103 -6.8119
38 1 2.5139 1.0341 -4.8133
39 1 0.4400 -2.1638 1.2491
40 1 1.8933 -2.6776 0.3591
41 1 1.6758 -3.9125 2.4988
42 1 3.1295 -2.8850 2.4991
43 1 0.4390 -2.1635 3.7472
44 1 1.8924 -2.6771 4.6378
45 1 3.9327 -1.2350 2.8584
46 1 3.9324 0.3066 3.7478
47 1 3.9320 -1.2348 4.6384
48 1 1.8933 1.0277 2.4980
49 1 0.4395 0.0001 2.4977
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000456996021.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:35
Heat of formation + Delta-G solvation = -70.020355 kcal
Electronic energy + Delta-G solvation = -26382.880580 eV
Core-core repulsion = 22886.069123 eV
Total energy + Delta-G solvation = -3496.811457 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.29383 -40.18021 -39.00545 -36.46831 -35.68795 -33.38035 -32.47894 -32.11130
-31.59010 -29.51858 -27.80839 -27.46797 -25.16763 -23.78790 -23.30189 -22.94602
-21.44734 -21.01548 -19.47201 -19.24169 -18.82080 -17.30138 -17.05861 -16.37743
-16.00871 -15.87729 -15.67340 -15.43451 -15.38251 -15.16710 -14.73607 -14.63702
-14.19782 -14.19153 -14.01019 -13.92131 -13.66961 -13.42531 -13.09936 -12.88197
-12.77505 -12.65745 -12.54348 -12.36487 -12.23836 -12.01458 -11.99086 -11.73612
-11.65913 -11.55125 -11.13044 -11.12134 -10.83415 -10.78683 -10.65139 -10.03780
-9.71454 -9.53714 -9.06430 -6.63353 0.26199 0.87900 1.23224 1.33692
1.43898 1.98587 2.06745 2.37583 2.68505 3.47684 3.66197 3.77487
3.83514 4.08463 4.16057 4.18666 4.28105 4.30290 4.31231 4.46371
4.49624 4.56203 4.59706 4.63348 4.66988 4.73384 4.81244 4.87987
4.88478 4.92598 5.01450 5.05590 5.07645 5.15580 5.19077 5.21555
5.22858 5.34575 5.39182 5.46623 5.47277 5.51127 5.53995 5.63298
5.66498 5.71824 5.76212 5.84743 6.08589 6.25669 6.58302 6.67997
6.74659 7.44026 7.99169
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.026168 B = 0.002752 C = 0.002622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1069.748630 B =10171.182281 C =10675.132243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.146 3.854
3 H 0.061 0.939
4 N -0.717 5.717
5 C 0.571 3.429
6 O -0.603 6.603
7 C -0.282 4.282
8 C -0.031 4.031
9 C -0.224 4.224
10 C 0.094 3.906
11 C -0.460 4.460
12 H 0.074 0.926
13 C 0.056 3.944
14 N -0.820 5.820
15 Si 0.959 3.041
16 H -0.262 1.262
17 H -0.270 1.270
18 H -0.255 1.255
19 C -0.263 4.263
20 C -0.024 4.024
21 C -0.084 4.084
22 H 0.074 0.926
23 C -0.118 4.118
24 C -0.119 4.119
25 C -0.112 4.112
26 C -0.088 4.088
27 H 0.076 0.924
28 C -0.153 4.153
29 C -0.107 4.107
30 H 0.029 0.971
31 H 0.071 0.929
32 H 0.084 0.916
33 H 0.406 0.594
34 H 0.140 0.860
35 H 0.121 0.879
36 H 0.300 0.700
37 H 0.100 0.900
38 H 0.105 0.895
39 H 0.072 0.928
40 H 0.059 0.941
41 H 0.067 0.933
42 H 0.063 0.937
43 H 0.064 0.936
44 H 0.066 0.934
45 H 0.056 0.944
46 H 0.049 0.951
47 H 0.058 0.942
48 H 0.059 0.941
49 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.389 -0.535 23.676 24.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.042 3.958
3 H 0.079 0.921
4 N -0.369 5.369
5 C 0.364 3.636
6 O -0.487 6.487
7 C -0.286 4.286
8 C -0.050 4.050
9 C -0.243 4.243
10 C 0.090 3.910
11 C -0.487 4.487
12 H 0.092 0.908
13 C -0.163 4.163
14 N -0.444 5.444
15 Si 0.782 3.218
16 H -0.188 1.188
17 H -0.197 1.197
18 H -0.179 1.179
19 C -0.282 4.282
20 C -0.043 4.043
21 C -0.103 4.103
22 H 0.092 0.908
23 C -0.155 4.155
24 C -0.156 4.156
25 C -0.149 4.149
26 C -0.106 4.106
27 H 0.094 0.906
28 C -0.210 4.210
29 C -0.144 4.144
30 H 0.048 0.952
31 H 0.089 0.911
32 H 0.103 0.897
33 H 0.245 0.755
34 H 0.157 0.843
35 H 0.139 0.861
36 H 0.112 0.888
37 H 0.117 0.883
38 H 0.124 0.876
39 H 0.091 0.909
40 H 0.077 0.923
41 H 0.085 0.915
42 H 0.081 0.919
43 H 0.083 0.917
44 H 0.085 0.915
45 H 0.075 0.925
46 H 0.068 0.932
47 H 0.077 0.923
48 H 0.078 0.922
49 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -6.496 0.214 23.375 24.262
hybrid contribution -0.011 0.107 -0.969 0.975
sum -6.507 0.321 22.406 23.334
Atomic orbital electron populations
1.22233 0.95050 1.02711 1.01773 1.20987 0.94483 0.96298 0.84022
0.92097 1.45920 1.67735 1.14349 1.08905 1.18348 0.75919 0.85640
0.83737 1.90633 1.54180 1.17766 1.86075 1.19321 1.19430 0.95888
0.93951 1.20787 0.94048 0.92273 0.97888 1.20967 1.10183 0.99684
0.93504 1.18038 0.87627 0.91317 0.93977 1.19717 1.24072 1.14822
0.90137 0.90799 1.26851 0.99773 0.94828 0.94892 1.69604 1.36508
1.37204 1.01119 0.85575 0.78896 0.78714 0.78590 1.18796 1.19652
1.17883 1.20801 1.13899 0.95306 0.98243 1.20561 0.93304 0.98349
0.92131 1.21366 1.00631 0.95637 0.92681 0.90815 1.21668 1.01481
0.94083 0.98287 1.21552 1.00979 0.98978 0.94140 1.21554 1.00693
0.94903 0.97789 1.21074 0.95734 0.96262 0.97554 0.90600 1.21960
0.95578 1.01516 1.01953 1.21625 1.01271 0.98573 0.92972 0.95162
0.91059 0.89724 0.75520 0.84262 0.86113 0.88849 0.88254 0.87646
0.90942 0.92272 0.91467 0.91857 0.91691 0.91544 0.92516 0.93198
0.92330 0.92211 0.90703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.51 8.78 71.98 0.63 -2.88 16
2 C 0.15 3.48 2.40 44.99 0.11 3.59 16
3 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16
4 N -0.72 -20.22 4.95 -445.57 -2.20 -22.42 16
5 C 0.57 22.00 7.73 86.73 0.67 22.67 16
6 O -0.60 -27.17 15.98 -3.97 -0.06 -27.23 16
7 C -0.28 -11.67 5.89 -19.93 -0.12 -11.79 16
8 C -0.03 -1.16 9.47 22.25 0.21 -0.95 16
9 C -0.22 -9.51 9.73 22.47 0.22 -9.29 16
10 C 0.09 4.59 5.11 -21.28 -0.11 4.48 16
11 C -0.46 -24.20 9.56 23.46 0.22 -23.97 16
12 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16
13 C 0.06 2.84 5.40 85.35 0.46 3.30 16
14 N -0.82 -42.22 13.92 21.87 0.30 -41.91 16
15 Si 0.96 41.80 24.52 68.60 1.68 43.49 16
16 H -0.26 -11.17 6.71 99.48 0.67 -10.50 16
17 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16
18 H -0.26 -11.59 6.87 99.48 0.68 -10.91 16
19 C -0.26 -12.72 7.11 22.47 0.16 -12.56 16
20 C -0.02 -1.11 9.52 22.25 0.21 -0.90 16
21 C -0.08 -1.43 1.91 -10.79 -0.02 -1.45 16
22 H 0.07 1.36 6.43 -2.39 -0.02 1.34 16
23 C -0.12 -1.71 4.68 30.59 0.14 -1.57 16
24 C -0.12 -1.47 5.65 30.59 0.17 -1.30 16
25 C -0.11 -1.23 5.45 30.59 0.17 -1.07 16
26 C -0.09 -1.05 3.19 -10.79 -0.03 -1.09 16
27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
28 C -0.15 -1.96 8.50 71.98 0.61 -1.35 16
29 C -0.11 -1.51 4.38 30.59 0.13 -1.37 16
30 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16
31 H 0.07 1.37 6.43 -2.39 -0.02 1.36 16
32 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16
33 H 0.41 9.52 4.87 -92.71 -0.45 9.07 16
34 H 0.14 3.83 6.37 -2.91 -0.02 3.82 16
35 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16
36 H 0.30 13.81 8.29 -92.70 -0.77 13.04 16
37 H 0.10 4.80 4.72 -2.91 -0.01 4.78 16
38 H 0.11 4.77 7.63 -2.91 -0.02 4.74 16
39 H 0.07 1.02 6.43 -2.38 -0.02 1.00 16
40 H 0.06 0.89 6.51 -2.39 -0.02 0.87 16
41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
42 H 0.06 0.82 6.43 -2.38 -0.02 0.81 16
43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16
45 H 0.06 0.80 4.81 -2.39 -0.01 0.79 16
46 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
47 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16
48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
49 H 0.07 0.97 6.43 -2.38 -0.02 0.96 16
Total: -1.00 -60.84 365.12 4.01 -56.83
By element:
Atomic # 1 Polarization: 28.29 SS G_CDS: 0.44 Total: 28.74 kcal
Atomic # 6 Polarization: -41.33 SS G_CDS: 3.84 Total: -37.49 kcal
Atomic # 7 Polarization: -62.44 SS G_CDS: -1.90 Total: -64.34 kcal
Atomic # 8 Polarization: -27.17 SS G_CDS: -0.06 Total: -27.23 kcal
Atomic # 14 Polarization: 41.80 SS G_CDS: 1.68 Total: 43.49 kcal
Total: -60.84 4.01 -56.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000456996021.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.191 kcal
(2) G-P(sol) polarization free energy of solvation -60.836 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds