Wall clock time and date at job start Tue Mar 31 2020 11:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46938 * 2 1 4 4 N 1.46493 * 109.46920 * 174.56010 * 3 2 1 5 5 C 1.37099 * 119.99972 * 263.83868 * 4 3 2 6 6 H 1.07994 * 120.00472 * 190.68321 * 5 4 3 7 7 C 1.38959 * 119.99614 * 10.68271 * 5 4 3 8 8 N 1.31408 * 120.00115 * 19.32093 * 7 5 4 9 9 Si 1.86796 * 119.99825 * 199.31451 * 7 5 4 10 10 H 1.48500 * 109.47236 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47221 * 120.00166 * 9 7 5 12 12 H 1.48497 * 109.47288 * 240.00263 * 9 7 5 13 13 C 1.34770 * 120.00261 * 83.84387 * 4 3 2 14 14 O 1.21289 * 120.00364 * 5.68009 * 13 4 3 15 15 C 1.50708 * 120.00176 * 185.68275 * 13 4 3 16 16 C 1.52997 * 109.47104 * 162.57761 * 15 13 4 17 17 C 1.53002 * 109.47102 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46988 * 300.00067 * 17 16 15 19 19 C 1.50702 * 109.46967 * 179.97438 * 18 17 16 20 20 C 1.38236 * 120.00008 * 120.00451 * 19 18 17 21 21 C 1.38228 * 119.99959 * 179.72505 * 20 19 18 22 22 C 1.38236 * 120.00040 * 0.25204 * 21 20 19 23 23 C 1.38231 * 120.00276 * 0.02562 * 22 21 20 24 24 C 1.38236 * 119.99876 * 300.23448 * 19 18 17 25 25 C 1.53000 * 109.46898 * 60.00010 * 18 17 16 26 26 C 1.52997 * 109.47082 * 282.58166 * 15 13 4 27 27 H 1.09005 * 109.46936 * 60.00191 * 1 2 3 28 28 H 1.08998 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47440 * 300.00535 * 1 2 3 30 30 H 1.08994 * 109.47055 * 239.99839 * 2 1 3 31 31 H 1.08997 * 109.46691 * 119.99691 * 2 1 3 32 32 H 1.08996 * 109.47085 * 54.55586 * 3 2 1 33 33 H 1.09003 * 109.47075 * 294.55776 * 3 2 1 34 34 H 0.96996 * 120.00323 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46731 * 42.58116 * 15 13 4 36 36 H 1.09000 * 109.47037 * 60.00542 * 16 15 13 37 37 H 1.09003 * 109.47230 * 299.99801 * 16 15 13 38 38 H 1.08998 * 109.47142 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.47279 * 59.99526 * 17 16 15 40 40 H 1.08995 * 109.47052 * 300.00184 * 18 17 16 41 41 H 1.08002 * 119.99555 * 359.97438 * 20 19 18 42 42 H 1.08002 * 119.99783 * 180.27453 * 21 20 19 43 43 H 1.08001 * 119.99474 * 180.02562 * 22 21 20 44 44 H 1.07994 * 120.00559 * 180.02562 * 23 22 21 45 45 H 1.07994 * 120.00384 * 359.97438 * 24 19 18 46 46 H 1.08995 * 109.47127 * 60.00219 * 25 18 17 47 47 H 1.09002 * 109.46839 * 179.97438 * 25 18 17 48 48 H 1.09003 * 109.46913 * 299.99253 * 26 15 13 49 49 H 1.08998 * 109.47281 * 59.99900 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4990 1.4446 0.1309 5 6 4.0765 1.6103 1.3633 6 1 5.1393 1.7846 1.4427 7 6 3.2941 1.5538 2.5103 8 7 2.1120 0.9810 2.4719 9 14 3.9227 2.2921 4.1069 10 1 5.2712 2.8734 3.8863 11 1 2.9928 3.3578 4.5594 12 1 4.0036 1.2326 5.1442 13 6 4.2738 1.2838 -0.9600 14 8 3.7684 1.2407 -2.0618 15 6 5.7682 1.1575 -0.8111 16 6 6.3598 0.5631 -2.0908 17 6 7.8768 0.4343 -1.9393 18 6 8.4838 1.8167 -1.6910 19 6 9.9779 1.6897 -1.5412 20 6 10.8190 2.3565 -2.4123 21 6 12.1896 2.2446 -2.2714 22 6 12.7190 1.4617 -1.2627 23 6 11.8780 0.7902 -0.3951 24 6 10.5073 0.9026 -0.5357 25 6 7.8921 2.4110 -0.4113 26 6 6.3746 2.5401 -0.5631 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5992 1.9837 0.8372 33 1 1.7584 1.9275 -0.9347 34 1 1.5657 0.9419 3.2724 35 1 5.9953 0.5046 0.0316 36 1 6.1326 1.2160 -2.9335 37 1 5.9277 -0.4220 -2.2674 38 1 8.2983 0.0112 -2.8511 39 1 8.1037 -0.2188 -1.0966 40 1 8.2569 2.4697 -2.5336 41 1 10.4053 2.9682 -3.2004 42 1 12.8467 2.7692 -2.9493 43 1 13.7899 1.3746 -1.1524 44 1 12.2916 0.1789 0.3932 45 1 9.8503 0.3789 0.1428 46 1 8.1190 1.7579 0.4313 47 1 8.3248 3.3956 -0.2342 48 1 6.1474 3.1929 -1.4059 49 1 5.9531 2.9635 0.3486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000463190613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:57 Heat of formation + Delta-G solvation = -42.323475 kcal Electronic energy + Delta-G solvation = -26919.061046 eV Core-core repulsion = 23423.450615 eV Total energy + Delta-G solvation = -3495.610431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20910 -40.23858 -38.34452 -36.97933 -34.27342 -33.59150 -33.05064 -31.70683 -31.62988 -29.81768 -27.57373 -26.44762 -24.51105 -23.50767 -23.48591 -22.52404 -21.78881 -20.84327 -20.35899 -18.76692 -17.86780 -17.69858 -16.44125 -16.18185 -16.12802 -16.02528 -15.53699 -15.40259 -15.11375 -14.95811 -14.68149 -14.48761 -14.09360 -14.01051 -13.82092 -13.63337 -13.40104 -13.14755 -13.04915 -12.85315 -12.64480 -12.55545 -12.35004 -12.26280 -12.18237 -12.07585 -12.00771 -11.90479 -11.71758 -11.45366 -11.38152 -11.13423 -11.02535 -10.71921 -10.08331 -9.73430 -9.64702 -9.48934 -8.19556 -5.77500 0.54019 0.58499 1.42563 1.51555 1.61963 2.07988 2.33092 2.96119 3.04780 3.18907 3.71018 3.79108 3.94072 4.11439 4.20041 4.23863 4.35931 4.36020 4.38971 4.41544 4.50660 4.56510 4.60852 4.62486 4.66353 4.71913 4.73212 4.76260 4.86215 4.95079 5.08485 5.11297 5.15757 5.17794 5.23514 5.25438 5.26328 5.29005 5.30393 5.33533 5.42862 5.54110 5.56091 5.64222 5.67806 5.70791 5.83283 5.86541 5.92972 6.21384 6.57087 7.20171 7.69274 8.10319 8.77761 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.003517 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.584803 B = 7960.001320 C = 9129.693168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.140 3.860 4 N -0.451 5.451 5 C -0.352 4.352 6 H 0.115 0.885 7 C -0.004 4.004 8 N -0.876 5.876 9 Si 0.980 3.020 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.440 3.560 14 O -0.647 6.647 15 C -0.078 4.078 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.043 4.043 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.102 4.102 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.268 1.187 -2.619 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.016 3.984 4 N -0.168 5.168 5 C -0.479 4.479 6 H 0.132 0.868 7 C -0.206 4.206 8 N -0.514 5.514 9 Si 0.805 3.195 10 H -0.183 1.183 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.230 3.770 14 O -0.537 6.537 15 C -0.099 4.099 16 C -0.127 4.127 17 C -0.134 4.134 18 C -0.061 4.061 19 C -0.079 4.079 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.140 4.140 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.141 0.859 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.833 1.136 -2.977 16.150 hybrid contribution -0.494 0.157 0.767 0.926 sum 15.339 1.294 -2.210 15.551 Atomic orbital electron populations 1.21473 0.94608 1.01201 1.00916 1.21517 0.96453 0.96917 0.99077 1.21245 0.81243 0.97582 0.98298 1.44084 1.05459 1.60408 1.06804 1.20179 0.95939 1.49472 0.82261 0.86786 1.25991 0.96387 0.96284 1.01955 1.70248 1.12228 1.38889 1.30027 0.85062 0.78841 0.77901 0.77733 1.18274 1.20851 1.20838 1.20931 0.90600 0.81717 0.83708 1.90459 1.76764 1.59294 1.27216 1.20962 0.90264 0.99155 0.99560 1.21235 0.95521 0.99818 0.96109 1.21522 0.93026 0.96539 1.02298 1.20139 0.90296 0.97138 0.98556 1.19921 0.94858 0.97235 0.95863 1.21305 0.93960 1.00137 0.99500 1.21416 0.95053 0.99121 0.98746 1.21441 1.00763 0.97462 0.95513 1.21414 0.93306 0.99902 0.99874 1.21204 0.95823 0.99197 0.98332 1.21522 0.93058 1.01459 0.97351 1.21451 0.96138 0.94710 1.01712 0.93559 0.92362 0.92710 0.97042 0.91217 0.89192 0.96346 0.92144 0.90063 0.92795 0.93532 0.91003 0.91345 0.90512 0.85376 0.84255 0.84198 0.84605 0.85937 0.91313 0.90951 0.93032 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.91 71.98 0.71 -4.08 16 2 C -0.10 -4.79 5.58 30.60 0.17 -4.62 16 3 C 0.14 7.08 4.57 86.38 0.39 7.48 16 4 N -0.45 -23.15 2.64 -635.55 -1.68 -24.82 16 5 C -0.35 -17.25 8.57 84.04 0.72 -16.53 16 6 H 0.11 5.22 4.93 -2.91 -0.01 5.21 16 7 C 0.00 -0.17 5.02 84.93 0.43 0.25 16 8 N -0.88 -43.20 8.40 21.67 0.18 -43.02 16 9 Si 0.98 38.17 29.59 68.60 2.03 40.20 16 10 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 11 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 C 0.44 21.93 6.79 87.66 0.60 22.53 16 14 O -0.65 -35.95 15.66 -3.06 -0.05 -36.00 16 15 C -0.08 -3.08 1.67 -11.54 -0.02 -3.10 16 16 C -0.09 -3.10 4.64 30.59 0.14 -2.96 16 17 C -0.10 -2.57 5.01 30.60 0.15 -2.42 16 18 C -0.04 -1.06 2.36 -11.54 -0.03 -1.09 16 19 C -0.08 -1.77 4.78 -19.86 -0.09 -1.86 16 20 C -0.13 -2.65 9.67 22.27 0.22 -2.43 16 21 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 24 C -0.13 -2.74 8.71 22.27 0.19 -2.55 16 25 C -0.10 -2.59 5.02 30.61 0.15 -2.43 16 26 C -0.10 -3.51 4.89 30.61 0.15 -3.36 16 27 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 3.58 6.53 -2.39 -0.02 3.56 16 32 H 0.09 4.69 5.81 -2.39 -0.01 4.67 16 33 H 0.02 0.96 7.54 -2.39 -0.02 0.94 16 34 H 0.27 12.56 8.31 -92.71 -0.77 11.79 16 35 H 0.08 3.24 7.36 -2.39 -0.02 3.22 16 36 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.75 7.38 -2.39 -0.02 1.73 16 40 H 0.08 1.90 7.88 -2.39 -0.02 1.88 16 41 H 0.13 2.27 7.95 -2.91 -0.02 2.25 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.12 2.56 7.10 -2.91 -0.02 2.54 16 46 H 0.07 1.80 7.40 -2.39 -0.02 1.78 16 47 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.07 2.48 6.10 -2.39 -0.01 2.47 16 Total: -1.00 -59.88 376.45 5.96 -53.92 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.91 Total: 32.99 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.56 Total: -23.27 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.49 Total: -67.84 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.05 Total: -36.00 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -59.88 5.96 -53.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000463190613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.593 kcal (2) G-P(sol) polarization free energy of solvation -59.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds