Wall clock time and date at job start Tue Mar 31 2020 11:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46858 * 2 1 4 4 H 1.08996 * 109.87832 * 55.58993 * 3 2 1 5 5 C 1.54328 * 109.88289 * 294.57281 * 3 2 1 6 6 C 1.55158 * 102.94118 * 218.23985 * 5 3 2 7 7 H 1.09001 * 111.03574 * 277.40916 * 6 5 3 8 8 C 1.53006 * 111.00070 * 153.57808 * 6 5 3 9 9 C 1.54909 * 101.58493 * 35.50038 * 6 5 3 10 10 N 1.47296 * 109.99847 * 176.65190 * 3 2 1 11 11 C 1.34769 * 125.79314 * 298.42806 * 10 3 2 12 12 O 1.21282 * 120.00102 * 5.45632 * 11 10 3 13 13 C 1.50698 * 119.99901 * 185.46207 * 11 10 3 14 14 C 1.53007 * 109.47183 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47175 * 54.99648 * 14 13 11 16 16 C 1.50699 * 109.46848 * 294.99733 * 14 13 11 17 17 H 1.08007 * 119.99754 * 333.95222 * 16 14 13 18 18 C 1.37868 * 120.00071 * 153.95616 * 16 14 13 19 19 N 1.31515 * 120.00056 * 183.98135 * 18 16 14 20 20 Si 1.86803 * 120.00164 * 3.97582 * 18 16 14 21 21 H 1.48505 * 109.46822 * 92.96672 * 20 18 16 22 22 H 1.48500 * 109.47159 * 212.96592 * 20 18 16 23 23 H 1.48499 * 109.46728 * 332.96958 * 20 18 16 24 24 C 1.50703 * 109.47202 * 174.99824 * 14 13 11 25 25 C 1.38235 * 119.99844 * 56.85139 * 24 14 13 26 26 C 1.38241 * 119.99506 * 179.81241 * 25 24 14 27 27 C 1.38227 * 120.00086 * 0.39758 * 26 25 24 28 28 C 1.38234 * 120.00190 * 359.85406 * 27 26 25 29 29 C 1.38233 * 120.00109 * 359.95921 * 28 27 26 30 30 H 1.08997 * 109.47469 * 65.19853 * 1 2 3 31 31 H 1.09000 * 109.47181 * 185.19980 * 1 2 3 32 32 H 1.08996 * 109.47221 * 305.19513 * 1 2 3 33 33 H 1.08994 * 109.46925 * 239.99686 * 2 1 3 34 34 H 1.09005 * 109.46991 * 119.99806 * 2 1 3 35 35 H 1.08999 * 110.71776 * 99.87342 * 5 3 2 36 36 H 1.09001 * 110.71884 * 336.60088 * 5 3 2 37 37 H 1.08991 * 109.47018 * 306.34491 * 8 6 5 38 38 H 1.08995 * 109.47055 * 66.34553 * 8 6 5 39 39 H 1.09004 * 109.46509 * 186.34829 * 8 6 5 40 40 H 1.09003 * 110.36301 * 81.82834 * 9 6 5 41 41 H 1.08988 * 110.36879 * 204.04232 * 9 6 5 42 42 H 1.09007 * 109.46899 * 299.99654 * 13 11 10 43 43 H 1.09002 * 109.47483 * 59.99663 * 13 11 10 44 44 H 0.97008 * 119.99958 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00332 * 359.97438 * 25 24 14 46 46 H 1.08001 * 119.99703 * 180.23394 * 26 25 24 47 47 H 1.08002 * 120.00050 * 179.83566 * 27 26 25 48 48 H 1.08004 * 120.00288 * 179.97438 * 28 27 26 49 49 H 1.07997 * 120.00450 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6173 1.9850 0.8457 5 6 1.6459 2.1385 -1.3198 6 6 2.8903 3.0086 -1.6389 7 1 2.8622 3.9485 -1.0878 8 6 3.0115 3.2616 -3.1430 9 6 4.0410 2.1028 -1.1337 10 7 3.5106 1.4569 0.0808 11 6 4.2492 0.9630 1.0942 12 8 3.7111 0.3632 2.0006 13 6 5.7437 1.1562 1.1011 14 6 6.3365 0.5039 2.3518 15 1 6.0333 -0.5422 2.3944 16 6 5.8360 1.2224 3.5783 17 1 5.5336 2.2572 3.5122 18 6 5.7642 0.5589 4.7847 19 7 5.2545 1.1610 5.8369 20 14 6.3908 -1.1953 4.9246 21 1 7.8069 -1.1809 5.3714 22 1 5.5675 -1.9377 5.9128 23 1 6.2960 -1.8618 3.6010 24 6 7.8402 0.5893 2.2982 25 6 8.4586 1.8193 2.1734 26 6 9.8380 1.8979 2.1282 27 6 10.5986 0.7459 2.1994 28 6 9.9800 -0.4845 2.3189 29 6 8.6008 -0.5629 2.3681 30 1 -0.3634 0.4311 -0.9328 31 1 -0.3633 -1.0234 0.0931 32 1 -0.3633 0.5923 0.8398 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.7643 2.7636 -1.1779 36 1 1.4765 1.4042 -2.1074 37 1 2.9942 2.3099 -3.6740 38 1 2.1770 3.8787 -3.4760 39 1 3.9497 3.7763 -3.3503 40 1 4.2906 1.3527 -1.8841 41 1 4.9180 2.7030 -0.8919 42 1 6.1739 0.6945 0.2123 43 1 5.9724 2.2220 1.1037 44 1 5.2036 0.6940 6.6857 45 1 7.8642 2.7191 2.1139 46 1 10.3213 2.8592 2.0345 47 1 11.6763 0.8071 2.1614 48 1 10.5743 -1.3847 2.3742 49 1 8.1175 -1.5242 2.4611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000476185847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:06 Heat of formation + Delta-G solvation = -23.738124 kcal Electronic energy + Delta-G solvation = -27121.410929 eV Core-core repulsion = 23626.606419 eV Total energy + Delta-G solvation = -3494.804509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.93280 -38.66085 -37.28984 -34.19766 -33.64409 -32.48809 -31.59885 -30.23300 -29.16020 -28.20584 -26.32424 -25.88199 -23.77895 -22.54303 -21.90314 -21.01065 -20.46052 -19.53552 -18.31975 -16.95852 -16.76303 -16.10960 -15.78445 -14.72592 -14.69172 -14.58136 -14.22023 -14.13743 -13.75957 -13.47998 -13.17703 -13.07767 -12.83453 -12.76108 -12.61231 -12.44035 -12.25753 -12.16603 -11.91969 -11.79704 -11.51125 -11.34313 -11.15631 -11.09706 -10.79393 -10.74115 -10.63808 -10.55377 -10.33844 -10.28924 -9.84776 -9.51527 -9.10698 -8.86070 -8.43372 -8.22237 -8.14861 -7.79375 -5.96010 -3.91888 2.08061 2.14691 3.41135 3.43431 3.45764 3.47505 3.48867 4.43894 4.51488 4.56820 4.58302 4.73434 5.08345 5.24321 5.28417 5.31015 5.38995 5.43071 5.48496 5.51271 5.51553 5.54465 5.59939 5.64334 5.68723 5.75857 5.83329 5.85897 5.93289 5.95813 5.99912 6.05546 6.12256 6.13774 6.22052 6.22673 6.33471 6.40010 6.48294 6.58289 6.69712 6.80340 6.90121 7.07177 7.13850 7.26399 7.61151 7.72494 7.82989 8.08975 8.55356 9.01854 9.04558 9.67436 11.17192 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004566 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.270677 B = 6130.804188 C = 7524.215375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.140 3.860 4 H 0.071 0.929 5 C -0.122 4.122 6 C -0.109 4.109 7 H 0.084 0.916 8 C -0.139 4.139 9 C 0.107 3.893 10 N -0.632 5.632 11 C 0.531 3.469 12 O -0.495 6.495 13 C -0.109 4.109 14 C 0.047 3.953 15 H 0.056 0.944 16 C -0.480 4.480 17 H 0.071 0.929 18 C 0.083 3.917 19 N -0.898 5.898 20 Si 0.868 3.132 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.259 1.259 24 C -0.037 4.037 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.151 4.151 28 C -0.122 4.122 29 C -0.143 4.143 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.261 0.739 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 2.067 -17.978 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.037 3.963 4 H 0.089 0.911 5 C -0.160 4.160 6 C -0.128 4.128 7 H 0.102 0.898 8 C -0.197 4.197 9 C -0.016 4.016 10 N -0.370 5.370 11 C 0.320 3.680 12 O -0.366 6.366 13 C -0.149 4.149 14 C 0.027 3.973 15 H 0.074 0.926 16 C -0.517 4.517 17 H 0.089 0.911 18 C -0.119 4.119 19 N -0.536 5.536 20 Si 0.697 3.303 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.038 4.038 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.169 4.169 28 C -0.140 4.140 29 C -0.161 4.161 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.136 0.864 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.147 1.660 -17.151 17.364 hybrid contribution 0.406 -0.834 0.368 0.998 sum -1.741 0.826 -16.783 16.893 Atomic orbital electron populations 1.21711 0.95709 1.01565 1.01402 1.21902 0.95571 0.96771 1.03217 1.21534 0.81297 0.96072 0.97406 0.91103 1.22795 0.97746 0.98616 0.96798 1.22370 0.95032 0.98668 0.96691 0.89783 1.21687 1.01908 1.01774 0.94326 1.22256 0.96896 0.95223 0.87258 1.48798 1.06012 1.61792 1.20395 1.20524 0.89525 0.78145 0.79821 1.90733 1.73026 1.38799 1.34044 1.21597 0.90771 1.02530 1.00015 1.18323 0.86371 0.98843 0.93721 0.92599 1.20595 1.41318 0.98930 0.90845 0.91125 1.24864 0.94034 0.97265 0.95783 1.69891 1.45049 1.37667 1.01019 0.87023 0.78785 0.86371 0.78131 1.20286 1.21840 1.18428 1.20780 0.98383 0.92177 0.92433 1.20936 0.93685 0.97773 1.00049 1.21046 0.94335 0.97577 1.01285 1.20853 0.98759 0.92958 1.04341 1.20967 0.94687 0.97165 1.01224 1.21122 0.93724 0.98407 1.02873 0.93059 0.92866 0.92617 0.92424 0.89956 0.90552 0.90669 0.92464 0.92380 0.92308 0.92007 0.90740 0.91512 0.89907 0.92894 0.86390 0.87151 0.87368 0.87325 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.66 37.16 0.36 -1.30 16 2 C -0.14 -1.92 5.39 -26.73 -0.14 -2.06 16 3 C 0.14 1.98 2.95 -66.80 -0.20 1.79 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.12 -1.22 5.08 -24.89 -0.13 -1.34 16 6 C -0.11 -1.04 3.64 -88.47 -0.32 -1.36 16 7 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.14 -1.01 9.29 37.16 0.35 -0.66 16 9 C 0.11 1.26 6.20 -2.53 -0.02 1.24 16 10 N -0.63 -10.05 3.08 -162.82 -0.50 -10.56 16 11 C 0.53 10.83 7.43 -10.99 -0.08 10.74 16 12 O -0.49 -12.41 13.81 5.56 0.08 -12.34 16 13 C -0.11 -2.10 3.78 -27.88 -0.11 -2.21 16 14 C 0.05 1.09 1.23 -92.92 -0.11 0.97 16 15 H 0.06 1.41 5.07 -51.93 -0.26 1.15 16 16 C -0.48 -13.43 7.15 -34.44 -0.25 -13.67 16 17 H 0.07 2.15 8.06 -52.48 -0.42 1.72 16 18 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 19 N -0.90 -28.47 13.96 55.43 0.77 -27.70 16 20 Si 0.87 22.90 25.39 -169.99 -4.32 18.59 16 21 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 23 H -0.26 -6.48 5.33 56.52 0.30 -6.18 16 24 C -0.04 -0.79 4.31 -104.62 -0.45 -1.24 16 25 C -0.11 -2.07 8.91 -39.58 -0.35 -2.42 16 26 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 27 C -0.15 -2.49 10.05 -39.59 -0.40 -2.89 16 28 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 29 C -0.14 -2.90 8.29 -39.58 -0.33 -3.23 16 30 H 0.05 0.48 7.58 -51.93 -0.39 0.09 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.08 1.47 6.61 -51.93 -0.34 1.13 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 37 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 41 H 0.07 0.84 7.47 -51.94 -0.39 0.45 16 42 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 43 H 0.08 1.50 7.23 -51.93 -0.38 1.13 16 44 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 45 H 0.12 2.22 7.46 -52.49 -0.39 1.83 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 49 H 0.11 2.23 6.70 -52.49 -0.35 1.88 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -33.71 380.39 -9.78 -43.49 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.47 Total: 3.13 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.07 Total: -20.35 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.27 Total: -38.25 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.32 Total: 18.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.71 -9.78 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000476185847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.753 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds