Wall clock time and date at job start Tue Mar 31 2020 11:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46858 * 2 1 4 4 H 1.08996 * 109.87832 * 55.58993 * 3 2 1 5 5 C 1.54328 * 109.88289 * 294.57281 * 3 2 1 6 6 C 1.55158 * 102.94118 * 218.23985 * 5 3 2 7 7 H 1.09001 * 111.03574 * 277.40916 * 6 5 3 8 8 C 1.53006 * 111.00070 * 153.57808 * 6 5 3 9 9 C 1.54909 * 101.58493 * 35.50038 * 6 5 3 10 10 N 1.47296 * 109.99847 * 176.65190 * 3 2 1 11 11 C 1.34769 * 125.79314 * 298.42806 * 10 3 2 12 12 O 1.21282 * 120.00102 * 5.45632 * 11 10 3 13 13 C 1.50698 * 119.99901 * 185.46207 * 11 10 3 14 14 C 1.53007 * 109.47183 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47175 * 54.99648 * 14 13 11 16 16 C 1.50699 * 109.46848 * 294.99733 * 14 13 11 17 17 H 1.08007 * 119.99754 * 333.95222 * 16 14 13 18 18 C 1.37868 * 120.00071 * 153.95616 * 16 14 13 19 19 N 1.31515 * 120.00056 * 183.98135 * 18 16 14 20 20 Si 1.86803 * 120.00164 * 3.97582 * 18 16 14 21 21 H 1.48505 * 109.46822 * 92.96672 * 20 18 16 22 22 H 1.48500 * 109.47159 * 212.96592 * 20 18 16 23 23 H 1.48499 * 109.46728 * 332.96958 * 20 18 16 24 24 C 1.50703 * 109.47202 * 174.99824 * 14 13 11 25 25 C 1.38235 * 119.99844 * 56.85139 * 24 14 13 26 26 C 1.38241 * 119.99506 * 179.81241 * 25 24 14 27 27 C 1.38227 * 120.00086 * 0.39758 * 26 25 24 28 28 C 1.38234 * 120.00190 * 359.85406 * 27 26 25 29 29 C 1.38233 * 120.00109 * 359.95921 * 28 27 26 30 30 H 1.08997 * 109.47469 * 65.19853 * 1 2 3 31 31 H 1.09000 * 109.47181 * 185.19980 * 1 2 3 32 32 H 1.08996 * 109.47221 * 305.19513 * 1 2 3 33 33 H 1.08994 * 109.46925 * 239.99686 * 2 1 3 34 34 H 1.09005 * 109.46991 * 119.99806 * 2 1 3 35 35 H 1.08999 * 110.71776 * 99.87342 * 5 3 2 36 36 H 1.09001 * 110.71884 * 336.60088 * 5 3 2 37 37 H 1.08991 * 109.47018 * 306.34491 * 8 6 5 38 38 H 1.08995 * 109.47055 * 66.34553 * 8 6 5 39 39 H 1.09004 * 109.46509 * 186.34829 * 8 6 5 40 40 H 1.09003 * 110.36301 * 81.82834 * 9 6 5 41 41 H 1.08988 * 110.36879 * 204.04232 * 9 6 5 42 42 H 1.09007 * 109.46899 * 299.99654 * 13 11 10 43 43 H 1.09002 * 109.47483 * 59.99663 * 13 11 10 44 44 H 0.97008 * 119.99958 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00332 * 359.97438 * 25 24 14 46 46 H 1.08001 * 119.99703 * 180.23394 * 26 25 24 47 47 H 1.08002 * 120.00050 * 179.83566 * 27 26 25 48 48 H 1.08004 * 120.00288 * 179.97438 * 28 27 26 49 49 H 1.07997 * 120.00450 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6173 1.9850 0.8457 5 6 1.6459 2.1385 -1.3198 6 6 2.8903 3.0086 -1.6389 7 1 2.8622 3.9485 -1.0878 8 6 3.0115 3.2616 -3.1430 9 6 4.0410 2.1028 -1.1337 10 7 3.5106 1.4569 0.0808 11 6 4.2492 0.9630 1.0942 12 8 3.7111 0.3632 2.0006 13 6 5.7437 1.1562 1.1011 14 6 6.3365 0.5039 2.3518 15 1 6.0333 -0.5422 2.3944 16 6 5.8360 1.2224 3.5783 17 1 5.5336 2.2572 3.5122 18 6 5.7642 0.5589 4.7847 19 7 5.2545 1.1610 5.8369 20 14 6.3908 -1.1953 4.9246 21 1 7.8069 -1.1809 5.3714 22 1 5.5675 -1.9377 5.9128 23 1 6.2960 -1.8618 3.6010 24 6 7.8402 0.5893 2.2982 25 6 8.4586 1.8193 2.1734 26 6 9.8380 1.8979 2.1282 27 6 10.5986 0.7459 2.1994 28 6 9.9800 -0.4845 2.3189 29 6 8.6008 -0.5629 2.3681 30 1 -0.3634 0.4311 -0.9328 31 1 -0.3633 -1.0234 0.0931 32 1 -0.3633 0.5923 0.8398 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.7643 2.7636 -1.1779 36 1 1.4765 1.4042 -2.1074 37 1 2.9942 2.3099 -3.6740 38 1 2.1770 3.8787 -3.4760 39 1 3.9497 3.7763 -3.3503 40 1 4.2906 1.3527 -1.8841 41 1 4.9180 2.7030 -0.8919 42 1 6.1739 0.6945 0.2123 43 1 5.9724 2.2220 1.1037 44 1 5.2036 0.6940 6.6857 45 1 7.8642 2.7191 2.1139 46 1 10.3213 2.8592 2.0345 47 1 11.6763 0.8071 2.1614 48 1 10.5743 -1.3847 2.3742 49 1 8.1175 -1.5242 2.4611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000476185847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:05 Heat of formation + Delta-G solvation = -43.368588 kcal Electronic energy + Delta-G solvation = -27122.262170 eV Core-core repulsion = 23626.606419 eV Total energy + Delta-G solvation = -3495.655750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25713 -40.10048 -38.69877 -35.91202 -34.75683 -33.86195 -33.49072 -31.65526 -30.53818 -29.31428 -27.80846 -27.13330 -25.05142 -24.11170 -23.33458 -22.23953 -21.37916 -21.01734 -19.75211 -19.06398 -18.17521 -17.40062 -17.11471 -16.44983 -16.23242 -15.77758 -15.61206 -15.51690 -15.23198 -14.84417 -14.54505 -14.33795 -14.17681 -14.04273 -13.95426 -13.71193 -13.45347 -13.39943 -13.34044 -13.02491 -12.89358 -12.70548 -12.52364 -12.36565 -12.14118 -12.07829 -11.92320 -11.83822 -11.58904 -11.54034 -11.45170 -11.30731 -11.04414 -10.75779 -10.42906 -9.65601 -9.49252 -9.32883 -8.25526 -6.21614 0.64038 0.70227 1.26095 1.29716 1.35866 1.89421 2.14719 2.35355 3.04834 3.17736 3.57344 3.58551 3.87621 4.03201 4.07860 4.15099 4.22470 4.28015 4.28473 4.37587 4.38963 4.46371 4.47629 4.57994 4.58795 4.65404 4.70881 4.78833 4.81126 4.83595 4.92528 4.96335 5.00391 5.10139 5.14120 5.18445 5.20140 5.25942 5.33183 5.36273 5.37224 5.39795 5.53363 5.64933 5.68935 5.73745 5.79608 5.99046 6.29930 6.31886 6.69916 6.76522 7.39857 7.48667 8.91946 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004566 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.270677 B = 6130.804188 C = 7524.215375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.130 3.870 4 H 0.041 0.959 5 C -0.109 4.109 6 C -0.101 4.101 7 H 0.078 0.922 8 C -0.132 4.132 9 C 0.097 3.903 10 N -0.629 5.629 11 C 0.521 3.479 12 O -0.559 6.559 13 C -0.102 4.102 14 C 0.051 3.949 15 H 0.033 0.967 16 C -0.458 4.458 17 H 0.031 0.969 18 C 0.019 3.981 19 N -0.953 5.953 20 Si 0.921 3.079 21 H -0.266 1.266 22 H -0.300 1.300 23 H -0.244 1.244 24 C -0.062 4.062 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.140 4.140 28 C -0.123 4.123 29 C -0.162 4.162 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.140 0.860 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 2.264 -21.808 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.027 3.973 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.120 4.120 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.025 4.025 10 N -0.364 5.364 11 C 0.311 3.689 12 O -0.436 6.436 13 C -0.141 4.141 14 C 0.031 3.969 15 H 0.051 0.949 16 C -0.496 4.496 17 H 0.049 0.951 18 C -0.177 4.177 19 N -0.595 5.595 20 Si 0.747 3.253 21 H -0.191 1.191 22 H -0.227 1.227 23 H -0.168 1.168 24 C -0.063 4.063 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.158 4.158 28 C -0.141 4.141 29 C -0.181 4.181 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.161 0.839 47 H 0.167 0.833 48 H 0.157 0.843 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.051 1.883 -21.071 21.155 hybrid contribution -0.194 -0.792 1.429 1.645 sum -0.245 1.090 -19.643 19.674 Atomic orbital electron populations 1.21673 0.93429 1.02047 1.02569 1.21824 0.97575 0.96303 1.01334 1.21747 0.80139 0.96349 0.99042 0.94042 1.22784 0.98572 0.98904 0.94367 1.22361 0.93412 0.97661 0.98550 0.90332 1.21651 1.02898 1.02578 0.91868 1.22637 0.98063 0.96080 0.85743 1.48797 1.07027 1.60187 1.20434 1.20769 0.90248 0.77832 0.80055 1.90706 1.74124 1.41933 1.36788 1.21502 0.90239 1.02922 0.99484 1.18134 0.88577 0.96927 0.93239 0.94911 1.20787 1.39223 0.97159 0.92467 0.95120 1.25621 0.95154 1.01126 0.95827 1.70042 1.48383 1.39417 1.01664 0.86178 0.78436 0.82207 0.78434 1.19076 1.22709 1.16834 1.20482 0.96581 0.93754 0.95454 1.21019 0.95229 0.96813 1.00852 1.21425 0.93160 0.99628 0.99577 1.21354 1.00822 0.91973 1.01637 1.21341 0.93628 0.99178 0.99907 1.21217 0.95252 0.97643 1.03941 0.89992 0.92383 0.93652 0.91202 0.94825 0.88805 0.88695 0.91656 0.91095 0.91610 0.90025 0.90260 0.88259 0.88985 0.93264 0.86882 0.83865 0.83328 0.84257 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.66 71.98 0.70 -2.41 16 2 C -0.13 -3.82 5.39 30.59 0.17 -3.66 16 3 C 0.13 3.74 2.95 45.29 0.13 3.88 16 4 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.11 -1.91 5.08 31.78 0.16 -1.75 16 6 C -0.10 -1.66 3.64 -9.40 -0.03 -1.70 16 7 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 8 C -0.13 -1.39 9.29 71.98 0.67 -0.72 16 9 C 0.10 2.10 6.20 86.85 0.54 2.64 16 10 N -0.63 -20.36 3.08 -787.43 -2.42 -22.78 16 11 C 0.52 22.34 7.43 87.66 0.65 22.99 16 12 O -0.56 -30.29 13.81 -3.04 -0.04 -30.33 16 13 C -0.10 -4.00 3.78 29.85 0.11 -3.89 16 14 C 0.05 2.44 1.23 -12.28 -0.02 2.42 16 15 H 0.03 1.72 5.07 -2.39 -0.01 1.71 16 16 C -0.46 -27.17 7.15 25.60 0.18 -26.98 16 17 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 18 C 0.02 1.17 5.47 84.65 0.46 1.64 16 19 N -0.95 -64.22 13.96 21.44 0.30 -63.92 16 20 Si 0.92 49.34 25.39 68.60 1.74 51.08 16 21 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 23 H -0.24 -12.31 5.33 99.48 0.53 -11.78 16 24 C -0.06 -2.63 4.31 -19.86 -0.09 -2.72 16 25 C -0.12 -4.57 8.91 22.27 0.20 -4.37 16 26 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 27 C -0.14 -3.97 10.05 22.27 0.22 -3.74 16 28 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 29 C -0.16 -6.35 8.29 22.27 0.18 -6.16 16 30 H 0.08 1.33 7.58 -2.39 -0.02 1.31 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.80 8.06 -2.39 -0.02 1.79 16 34 H 0.03 1.30 6.61 -2.38 -0.02 1.28 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.35 7.66 -2.39 -0.02 1.34 16 37 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 41 H 0.08 1.66 7.47 -2.39 -0.02 1.64 16 42 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.09 3.41 7.23 -2.39 -0.02 3.39 16 44 H 0.26 16.55 8.31 -92.70 -0.77 15.78 16 45 H 0.11 4.26 7.46 -2.91 -0.02 4.24 16 46 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 47 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 48 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 49 H 0.10 4.09 6.70 -2.91 -0.02 4.07 16 Total: -1.00 -81.43 380.39 4.99 -76.44 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.73 Total: 21.17 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.69 Total: -31.65 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.12 Total: -86.70 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.04 Total: -30.33 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.74 Total: 51.08 kcal Total: -81.43 4.99 -76.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000476185847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.068 kcal (2) G-P(sol) polarization free energy of solvation -81.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds