Wall clock time and date at job start Tue Mar 31 2020 12:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47312 * 240.00115 * 2 1 3 5 5 C 1.53007 * 109.46869 * 299.99974 * 4 2 1 6 6 C 1.53009 * 109.46798 * 299.99818 * 5 4 2 7 7 C 1.52996 * 109.46976 * 60.00172 * 6 5 4 8 8 H 1.09001 * 109.47469 * 59.99871 * 7 6 5 9 9 C 1.53003 * 109.47051 * 179.97438 * 7 6 5 10 10 N 1.46494 * 109.47106 * 295.00504 * 9 7 6 11 11 C 1.34779 * 119.99992 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99906 * 359.97438 * 11 10 9 13 13 C 1.47639 * 120.00236 * 179.97438 * 11 10 9 14 14 C 1.40016 * 119.89517 * 359.71789 * 13 11 10 15 15 C 1.36316 * 120.10853 * 179.71766 * 14 13 11 16 16 C 1.40892 * 119.88979 * 0.53787 * 15 14 13 17 17 C 1.41111 * 120.10303 * 179.71514 * 16 15 14 18 18 H 1.07999 * 119.99796 * 204.65228 * 17 16 15 19 19 C 1.40222 * 119.99850 * 24.65915 * 17 16 15 20 20 N 1.30648 * 120.00291 * 17.87625 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 197.87964 * 19 17 16 22 22 H 1.48504 * 109.47056 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46935 * 119.99883 * 21 19 17 24 24 H 1.48500 * 109.47172 * 240.00003 * 21 19 17 25 25 C 1.40888 * 119.79262 * 359.74183 * 16 15 14 26 26 C 1.36324 * 119.89392 * 359.97438 * 25 16 15 27 27 C 1.52995 * 109.47253 * 119.99598 * 2 1 3 28 28 H 1.08999 * 109.47599 * 299.99893 * 27 2 1 29 29 C 1.52998 * 109.47253 * 179.97438 * 27 2 1 30 30 H 1.08999 * 109.47249 * 300.00069 * 1 2 3 31 31 H 1.09001 * 109.47652 * 59.99844 * 1 2 3 32 32 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47239 * 59.99432 * 4 2 1 34 34 H 1.09001 * 109.47531 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47146 * 59.99639 * 5 4 2 36 36 H 1.08999 * 109.47050 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46815 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.46662 * 300.00069 * 6 5 4 39 39 H 1.09004 * 109.46493 * 54.99882 * 9 7 6 40 40 H 1.08995 * 109.47441 * 174.99460 * 9 7 6 41 41 H 0.96998 * 120.00516 * 359.97438 * 10 9 7 42 42 H 1.07999 * 119.94231 * 0.02562 * 14 13 11 43 43 H 1.07998 * 120.05485 * 180.29948 * 15 14 13 44 44 H 0.96996 * 120.00383 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.05652 * 180.02562 * 25 16 15 46 46 H 1.07993 * 119.94524 * 180.02562 * 26 25 16 47 47 H 1.09001 * 109.46980 * 60.00401 * 29 27 2 48 48 H 1.09004 * 109.47432 * 180.02562 * 29 27 2 49 49 H 1.08999 * 109.47249 * 300.00332 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1637 1.2493 9 6 2.0396 -2.8852 2.4986 10 7 1.4551 -4.2271 2.5600 11 6 1.7628 -5.0501 3.5821 12 8 2.5258 -4.6788 4.4529 13 6 1.1734 -6.4022 3.6443 14 6 0.2903 -6.8253 2.6434 15 6 -0.2519 -8.0750 2.6935 16 6 0.0686 -8.9372 3.7607 17 6 -0.4949 -10.2296 3.8202 18 1 -0.5913 -10.7333 4.7706 19 6 -0.9294 -10.8597 2.6453 20 7 -0.5127 -10.4333 1.4828 21 14 -2.1042 -12.3088 2.7423 22 1 -2.4234 -12.5929 4.1645 23 1 -3.3545 -11.9821 2.0106 24 1 -1.4692 -13.5028 2.1289 25 6 0.9530 -8.5048 4.7686 26 6 1.4949 -7.2554 4.7068 27 6 2.0400 -0.7211 1.2492 28 1 1.6767 -0.2073 2.1392 29 6 3.5700 -0.7217 1.2489 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 0.4400 -2.1638 -1.2492 36 1 1.8937 -2.6777 -2.1389 37 1 1.6771 -3.9128 -0.0001 38 1 3.1301 -2.8849 0.0000 39 1 3.1259 -2.9637 2.4550 40 1 1.7514 -2.3223 3.3863 41 1 0.8461 -4.5232 1.8655 42 1 0.0424 -6.1623 1.8278 43 1 -0.9292 -8.4022 1.9185 44 1 -0.8135 -10.8689 0.6701 45 1 1.2020 -9.1624 5.5883 46 1 2.1733 -6.9233 5.4787 47 1 3.9337 0.3059 1.2487 48 1 3.9334 -1.2359 2.1387 49 1 3.9330 -1.2358 0.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000482692439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:35 Heat of formation + Delta-G solvation = -58.510690 kcal Electronic energy + Delta-G solvation = -26210.025353 eV Core-core repulsion = 22713.712992 eV Total energy + Delta-G solvation = -3496.312361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.26386 -38.83316 -37.07565 -34.67196 -33.85935 -32.27874 -31.91664 -30.19091 -29.43580 -28.84807 -26.50767 -25.39399 -24.30757 -22.48885 -21.89349 -21.10105 -20.69392 -19.60719 -17.96386 -17.52440 -16.94452 -15.87406 -15.67691 -15.39648 -15.04928 -14.71379 -14.24670 -14.00179 -13.94776 -13.60672 -13.29225 -13.17052 -13.13430 -12.76325 -12.68934 -12.31805 -12.11971 -11.91080 -11.88736 -11.74930 -11.61430 -11.40291 -11.33750 -11.27381 -11.10890 -10.95673 -10.86845 -10.63780 -10.17445 -10.07749 -10.02431 -9.99698 -9.55897 -9.34473 -8.92554 -8.51210 -7.71186 -7.52974 -7.03246 -4.59519 2.24857 2.90714 2.95147 3.00764 3.04393 3.74290 3.85635 3.89820 4.45056 4.48492 4.54092 4.58627 4.95774 5.03037 5.07959 5.13687 5.19838 5.27204 5.38346 5.46090 5.52229 5.57687 5.64811 5.66190 5.74742 5.77053 5.80581 5.86585 5.89179 5.99387 6.05228 6.07825 6.11358 6.16000 6.17812 6.25161 6.31923 6.33222 6.47631 6.77569 6.83365 6.98387 7.09612 7.14554 7.44576 7.66829 7.80593 7.86970 8.07960 8.28867 8.40723 8.63945 8.76192 9.12583 9.88814 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.002718 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.000875 B =10300.783796 C =11309.840060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.095 4.095 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.741 5.741 11 C 0.570 3.430 12 O -0.577 6.577 13 C -0.283 4.283 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.772 5.772 21 Si 0.912 3.088 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.239 4.239 26 C -0.022 4.022 27 C -0.077 4.077 28 H 0.071 0.929 29 C -0.156 4.156 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.396 0.604 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.286 0.714 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 15.164 -7.812 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.114 4.114 8 H 0.096 0.904 9 C 0.003 3.997 10 N -0.394 5.394 11 C 0.365 3.635 12 O -0.460 6.460 13 C -0.288 4.288 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.259 4.259 26 C -0.042 4.042 27 C -0.096 4.096 28 H 0.089 0.911 29 C -0.213 4.213 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.231 0.769 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.239 15.386 -7.460 17.144 hybrid contribution -0.776 -0.796 -0.501 1.220 sum 0.463 14.590 -7.961 16.627 Atomic orbital electron populations 1.21954 0.95393 1.02305 1.01316 1.21099 0.95696 0.98802 0.94722 0.91443 1.21606 1.00766 0.95788 0.97171 1.21568 1.01010 0.95425 0.97802 1.21639 1.01276 0.98996 0.93595 1.21439 1.00848 0.94639 0.94430 0.90377 1.21284 0.98160 0.83349 0.96867 1.45926 1.50541 1.15024 1.27892 1.18581 0.79805 0.85115 0.80002 1.90626 1.38204 1.77366 1.39759 1.18923 1.12224 0.94869 1.02783 1.20465 0.96105 0.95995 0.95626 1.20972 1.04309 0.92740 1.01729 1.17788 0.87132 0.92383 0.90189 1.19872 1.32809 0.99964 0.94426 0.89702 1.26095 0.94938 0.98917 0.94723 1.69751 1.33332 1.37234 0.99211 0.86182 0.80056 0.80052 0.80120 1.18067 1.19398 1.19678 1.20722 1.04800 0.97018 1.03334 1.20364 0.95896 0.92838 0.95056 1.21052 0.95898 0.94778 0.97849 0.91107 1.22019 0.95233 1.01492 1.02510 0.92872 0.92995 0.91846 0.92401 0.91741 0.91713 0.92168 0.91693 0.91478 0.91924 0.92349 0.76876 0.89425 0.86221 0.90318 0.88407 0.88143 0.92991 0.92155 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.50 37.16 0.32 -0.89 16 2 C -0.08 -0.68 2.72 -90.62 -0.25 -0.93 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.92 5.18 -26.73 -0.14 -1.06 16 5 C -0.12 -1.06 5.65 -26.72 -0.15 -1.22 16 6 C -0.12 -1.22 4.80 -26.73 -0.13 -1.35 16 7 C -0.09 -1.00 1.72 -90.62 -0.16 -1.16 16 8 H 0.08 0.83 6.43 -51.93 -0.33 0.49 16 9 C 0.13 1.80 4.56 -4.04 -0.02 1.78 16 10 N -0.74 -12.46 5.23 -61.32 -0.32 -12.78 16 11 C 0.57 12.31 7.76 -12.42 -0.10 12.21 16 12 O -0.58 -14.00 16.32 5.29 0.09 -13.92 16 13 C -0.28 -6.54 5.89 -104.73 -0.62 -7.16 16 14 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 16 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 17 C -0.44 -11.05 9.04 -37.75 -0.34 -11.39 16 18 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 20 N -0.77 -18.46 10.95 55.56 0.61 -17.85 16 21 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 C -0.08 -0.70 2.25 -90.62 -0.20 -0.91 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 C -0.16 -1.41 8.15 37.16 0.30 -1.11 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 35 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.74 7.18 -51.93 -0.37 0.37 16 38 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 39 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.40 6.00 5.66 -40.82 -0.23 5.77 16 42 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 43 H 0.12 2.97 6.15 -52.49 -0.32 2.64 16 44 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 45 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 49 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -27.89 368.70 -10.28 -38.17 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.54 Total: 11.07 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -3.64 Total: -22.47 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.29 Total: -30.63 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.89 -10.28 -38.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482692439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.345 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds