Wall clock time and date at job start Tue Mar 31 2020 12:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47312 * 240.00115 * 2 1 3 5 5 C 1.53007 * 109.46869 * 299.99974 * 4 2 1 6 6 C 1.53009 * 109.46798 * 299.99818 * 5 4 2 7 7 C 1.52996 * 109.46976 * 60.00172 * 6 5 4 8 8 H 1.09001 * 109.47469 * 59.99871 * 7 6 5 9 9 C 1.53003 * 109.47051 * 179.97438 * 7 6 5 10 10 N 1.46494 * 109.47106 * 295.00504 * 9 7 6 11 11 C 1.34779 * 119.99992 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99906 * 359.97438 * 11 10 9 13 13 C 1.47639 * 120.00236 * 179.97438 * 11 10 9 14 14 C 1.40016 * 119.89517 * 359.71789 * 13 11 10 15 15 C 1.36316 * 120.10853 * 179.71766 * 14 13 11 16 16 C 1.40892 * 119.88979 * 0.53787 * 15 14 13 17 17 C 1.41111 * 120.10303 * 179.71514 * 16 15 14 18 18 H 1.07999 * 119.99796 * 204.65228 * 17 16 15 19 19 C 1.40222 * 119.99850 * 24.65915 * 17 16 15 20 20 N 1.30648 * 120.00291 * 17.87625 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 197.87964 * 19 17 16 22 22 H 1.48504 * 109.47056 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46935 * 119.99883 * 21 19 17 24 24 H 1.48500 * 109.47172 * 240.00003 * 21 19 17 25 25 C 1.40888 * 119.79262 * 359.74183 * 16 15 14 26 26 C 1.36324 * 119.89392 * 359.97438 * 25 16 15 27 27 C 1.52995 * 109.47253 * 119.99598 * 2 1 3 28 28 H 1.08999 * 109.47599 * 299.99893 * 27 2 1 29 29 C 1.52998 * 109.47253 * 179.97438 * 27 2 1 30 30 H 1.08999 * 109.47249 * 300.00069 * 1 2 3 31 31 H 1.09001 * 109.47652 * 59.99844 * 1 2 3 32 32 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47239 * 59.99432 * 4 2 1 34 34 H 1.09001 * 109.47531 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47146 * 59.99639 * 5 4 2 36 36 H 1.08999 * 109.47050 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46815 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.46662 * 300.00069 * 6 5 4 39 39 H 1.09004 * 109.46493 * 54.99882 * 9 7 6 40 40 H 1.08995 * 109.47441 * 174.99460 * 9 7 6 41 41 H 0.96998 * 120.00516 * 359.97438 * 10 9 7 42 42 H 1.07999 * 119.94231 * 0.02562 * 14 13 11 43 43 H 1.07998 * 120.05485 * 180.29948 * 15 14 13 44 44 H 0.96996 * 120.00383 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.05652 * 180.02562 * 25 16 15 46 46 H 1.07993 * 119.94524 * 180.02562 * 26 25 16 47 47 H 1.09001 * 109.46980 * 60.00401 * 29 27 2 48 48 H 1.09004 * 109.47432 * 180.02562 * 29 27 2 49 49 H 1.08999 * 109.47249 * 300.00332 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1637 1.2493 9 6 2.0396 -2.8852 2.4986 10 7 1.4551 -4.2271 2.5600 11 6 1.7628 -5.0501 3.5821 12 8 2.5258 -4.6788 4.4529 13 6 1.1734 -6.4022 3.6443 14 6 0.2903 -6.8253 2.6434 15 6 -0.2519 -8.0750 2.6935 16 6 0.0686 -8.9372 3.7607 17 6 -0.4949 -10.2296 3.8202 18 1 -0.5913 -10.7333 4.7706 19 6 -0.9294 -10.8597 2.6453 20 7 -0.5127 -10.4333 1.4828 21 14 -2.1042 -12.3088 2.7423 22 1 -2.4234 -12.5929 4.1645 23 1 -3.3545 -11.9821 2.0106 24 1 -1.4692 -13.5028 2.1289 25 6 0.9530 -8.5048 4.7686 26 6 1.4949 -7.2554 4.7068 27 6 2.0400 -0.7211 1.2492 28 1 1.6767 -0.2073 2.1392 29 6 3.5700 -0.7217 1.2489 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 0.4400 -2.1638 -1.2492 36 1 1.8937 -2.6777 -2.1389 37 1 1.6771 -3.9128 -0.0001 38 1 3.1301 -2.8849 0.0000 39 1 3.1259 -2.9637 2.4550 40 1 1.7514 -2.3223 3.3863 41 1 0.8461 -4.5232 1.8655 42 1 0.0424 -6.1623 1.8278 43 1 -0.9292 -8.4022 1.9185 44 1 -0.8135 -10.8689 0.6701 45 1 1.2020 -9.1624 5.5883 46 1 2.1733 -6.9233 5.4787 47 1 3.9337 0.3059 1.2487 48 1 3.9334 -1.2359 2.1387 49 1 3.9330 -1.2358 0.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000482692439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:34 Heat of formation + Delta-G solvation = -71.193529 kcal Electronic energy + Delta-G solvation = -26210.575322 eV Core-core repulsion = 22713.712992 eV Total energy + Delta-G solvation = -3496.862330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.24844 -40.36671 -38.86041 -35.99910 -35.66980 -33.21206 -32.86756 -31.84258 -31.29728 -29.73888 -27.98713 -26.60910 -25.22395 -23.67667 -23.11804 -22.79930 -21.79459 -21.25485 -19.37096 -18.83454 -18.38875 -17.31895 -16.89717 -16.69009 -16.23534 -15.75746 -15.64422 -15.58069 -15.07301 -14.99010 -14.62704 -14.44037 -14.25505 -13.92674 -13.86213 -13.70156 -13.55877 -13.25928 -13.11307 -12.85488 -12.75235 -12.60871 -12.48506 -12.37835 -12.37637 -12.13299 -11.81615 -11.76406 -11.68600 -11.37997 -11.12799 -10.97765 -10.84661 -10.75456 -10.61483 -10.02333 -9.57745 -9.40161 -8.79591 -6.48324 0.44164 1.14546 1.38710 1.42305 1.55540 2.12694 2.18162 2.42887 2.78727 3.63974 3.68730 3.72496 3.77146 4.17007 4.20811 4.27051 4.30656 4.33185 4.42501 4.44298 4.48100 4.49628 4.61862 4.66989 4.75656 4.83465 4.91101 4.92520 4.99111 5.03071 5.04975 5.06869 5.12092 5.15865 5.17521 5.27364 5.28819 5.30216 5.40990 5.45444 5.49467 5.55587 5.57833 5.64065 5.73351 5.82296 5.94641 5.99324 6.22458 6.53780 6.72166 6.77106 6.88870 7.45412 8.15847 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.002718 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.000875 B =10300.783796 C =11309.840060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.084 4.084 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.722 5.722 11 C 0.569 3.431 12 O -0.609 6.609 13 C -0.294 4.294 14 C -0.053 4.053 15 C -0.197 4.197 16 C 0.102 3.898 17 C -0.473 4.473 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.797 5.797 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.259 1.259 24 H -0.264 1.264 25 C -0.254 4.254 26 C -0.033 4.033 27 C -0.075 4.075 28 H 0.070 0.930 29 C -0.154 4.154 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.406 0.594 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.297 0.703 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 16.007 -9.545 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.103 4.103 8 H 0.101 0.899 9 C 0.004 3.996 10 N -0.374 5.374 11 C 0.362 3.638 12 O -0.493 6.493 13 C -0.299 4.299 14 C -0.072 4.072 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.421 5.421 21 Si 0.807 3.193 22 H -0.181 1.181 23 H -0.184 1.184 24 H -0.188 1.188 25 C -0.273 4.273 26 C -0.052 4.052 27 C -0.094 4.094 28 H 0.089 0.911 29 C -0.211 4.211 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.243 0.757 42 H 0.140 0.860 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.281 16.262 -9.228 18.700 hybrid contribution -0.418 -0.993 0.019 1.078 sum -0.136 15.268 -9.209 17.831 Atomic orbital electron populations 1.21953 0.95175 1.02041 1.01804 1.21076 0.95814 0.99102 0.93886 0.90426 1.21601 1.00834 0.95135 0.97561 1.21544 1.01161 0.95891 0.96888 1.21630 1.01028 0.98563 0.94284 1.21376 1.01004 0.95230 0.92661 0.89877 1.21455 0.97712 0.81899 0.98540 1.45797 1.49696 1.15441 1.26489 1.18428 0.79547 0.85099 0.80676 1.90606 1.39635 1.77889 1.41216 1.19199 1.12293 0.95707 1.02656 1.20706 0.94789 0.95694 0.96009 1.21010 1.05199 0.93626 1.01797 1.18137 0.87777 0.93287 0.90953 1.20132 1.34235 1.00289 0.95353 0.89732 1.26922 0.95866 1.01506 0.93805 1.69763 1.33750 1.38493 1.00054 0.85070 0.77760 0.76419 0.80034 1.18122 1.18375 1.18826 1.20862 1.05221 0.97526 1.03740 1.20505 0.96064 0.93026 0.95648 1.21048 0.95917 0.93669 0.98723 0.91147 1.22005 0.95175 1.02133 1.01820 0.92862 0.92112 0.92449 0.91285 0.91661 0.91419 0.91828 0.92828 0.91913 0.92680 0.93013 0.75709 0.86009 0.86746 0.89161 0.87821 0.88064 0.91719 0.93676 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.50 71.98 0.61 -1.43 16 2 C -0.08 -1.09 2.72 -10.80 -0.03 -1.12 16 3 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.52 5.18 30.60 0.16 -1.36 16 5 C -0.12 -1.82 5.65 30.60 0.17 -1.64 16 6 C -0.12 -2.26 4.80 30.60 0.15 -2.11 16 7 C -0.08 -1.66 1.72 -10.79 -0.02 -1.68 16 8 H 0.08 1.60 6.43 -2.39 -0.02 1.58 16 9 C 0.13 3.50 4.56 86.38 0.39 3.90 16 10 N -0.72 -23.74 5.23 -466.17 -2.44 -26.18 16 11 C 0.57 24.55 7.76 86.73 0.67 25.22 16 12 O -0.61 -29.85 16.32 -3.99 -0.07 -29.91 16 13 C -0.29 -13.66 5.89 -19.93 -0.12 -13.78 16 14 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 15 C -0.20 -9.76 8.64 22.47 0.19 -9.57 16 16 C 0.10 5.32 5.58 -21.28 -0.12 5.20 16 17 C -0.47 -23.96 9.04 23.46 0.21 -23.75 16 18 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 19 C 0.04 1.76 5.14 85.35 0.44 2.20 16 20 N -0.80 -37.93 10.95 21.87 0.24 -37.69 16 21 Si 0.99 34.69 29.60 68.60 2.03 36.72 16 22 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 23 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 24 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 25 C -0.25 -12.78 9.73 22.47 0.22 -12.57 16 26 C -0.03 -1.63 9.52 22.25 0.21 -1.41 16 27 C -0.07 -1.23 2.25 -10.79 -0.02 -1.26 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 C -0.15 -2.58 8.15 71.98 0.59 -2.00 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.83 4.81 -2.39 -0.01 0.82 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 35 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.14 7.18 -2.39 -0.02 1.13 16 38 H 0.06 1.26 6.43 -2.39 -0.02 1.25 16 39 H 0.05 1.63 6.71 -2.38 -0.02 1.62 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 11.70 5.66 -92.71 -0.52 11.17 16 42 H 0.12 4.39 6.37 -2.91 -0.02 4.38 16 43 H 0.11 5.72 6.15 -2.91 -0.02 5.70 16 44 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 45 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.04 0.89 6.54 -2.39 -0.02 0.87 16 49 H 0.06 1.05 4.81 -2.39 -0.01 1.04 16 Total: -1.00 -60.34 368.70 4.12 -56.21 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.43 Total: 40.12 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.92 Total: -39.28 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -2.20 Total: -63.87 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.07 Total: -29.91 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -60.34 4.12 -56.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482692439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.979 kcal (2) G-P(sol) polarization free energy of solvation -60.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds