Wall clock time and date at job start Tue Mar 31 2020 11:55:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.46792 * 2 1
4 4 N 1.46497 * 109.46936 * 179.97438 * 3 2 1
5 5 C 1.37102 * 120.00177 * 265.79754 * 4 3 2
6 6 H 1.08001 * 119.99912 * 143.84907 * 5 4 3
7 7 C 1.38944 * 119.99895 * 323.85208 * 5 4 3
8 8 N 1.31412 * 120.00163 * 157.25764 * 7 5 4
9 9 Si 1.86802 * 120.00062 * 337.25778 * 7 5 4
10 10 H 1.48502 * 109.47055 * 93.18527 * 9 7 5
11 11 H 1.48500 * 109.47334 * 213.18295 * 9 7 5
12 12 H 1.48501 * 109.47031 * 333.18732 * 9 7 5
13 13 C 1.34777 * 119.99637 * 85.79953 * 4 3 2
14 14 O 1.21293 * 120.00476 * 0.02562 * 13 4 3
15 15 C 1.50707 * 119.99812 * 179.72153 * 13 4 3
16 16 C 1.50698 * 109.47293 * 180.27401 * 15 13 4
17 17 C 1.32566 * 119.99784 * 127.00511 * 16 15 13
18 18 C 1.47821 * 120.00093 * 8.23982 * 17 16 15
19 19 C 1.39528 * 120.13850 * 217.96695 * 18 17 16
20 20 C 1.37973 * 119.85425 * 179.76572 * 19 18 17
21 21 C 1.38345 * 120.14349 * 0.47908 * 20 19 18
22 22 C 1.50699 * 119.85907 * 179.74512 * 21 20 19
23 23 C 1.52998 * 109.47126 * 300.02276 * 22 21 20
24 24 C 1.52998 * 109.47177 * 60.02593 * 22 21 20
25 25 C 1.38347 * 120.28117 * 359.76961 * 21 20 19
26 26 C 1.37974 * 120.14519 * 359.97438 * 25 21 20
27 27 H 1.09003 * 109.47541 * 300.00124 * 1 2 3
28 28 H 1.09002 * 109.47318 * 60.00599 * 1 2 3
29 29 H 1.09009 * 109.46603 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47144 * 239.99747 * 2 1 3
31 31 H 1.09002 * 109.46800 * 119.99307 * 2 1 3
32 32 H 1.09003 * 109.47179 * 59.99654 * 3 2 1
33 33 H 1.09002 * 109.46700 * 299.99780 * 3 2 1
34 34 H 0.96996 * 120.00237 * 180.02562 * 8 7 5
35 35 H 1.09001 * 109.47047 * 300.27718 * 15 13 4
36 36 H 1.09005 * 109.46890 * 60.27778 * 15 13 4
37 37 H 1.07997 * 120.00079 * 307.01290 * 16 15 13
38 38 H 1.07997 * 119.99912 * 188.23362 * 17 16 15
39 39 H 1.08001 * 120.07262 * 359.97070 * 19 18 17
40 40 H 1.08004 * 119.92924 * 180.23251 * 20 19 18
41 41 H 1.09004 * 109.46986 * 180.02562 * 22 21 20
42 42 H 1.09004 * 109.47044 * 60.00212 * 23 22 21
43 43 H 1.09002 * 109.46861 * 179.97438 * 23 22 21
44 44 H 1.08996 * 109.47485 * 299.99970 * 23 22 21
45 45 H 1.09003 * 109.46681 * 300.00219 * 24 22 21
46 46 H 1.09006 * 109.47182 * 59.99755 * 24 22 21
47 47 H 1.08993 * 109.47428 * 179.97438 * 24 22 21
48 48 H 1.08001 * 119.92697 * 179.97438 * 25 21 20
49 49 H 1.07993 * 120.07386 * 179.97438 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 3.5049 1.4426 0.0006
5 6 4.1899 1.5298 1.1850
6 1 5.1140 0.9862 1.3157
7 6 3.6954 2.3175 2.2172
8 7 4.0579 2.0789 3.4576
9 14 2.5151 3.7159 1.8418
10 1 1.1171 3.2306 1.9662
11 1 2.7410 4.8258 2.8023
12 1 2.7487 4.2030 0.4586
13 6 4.1792 1.3570 -1.1632
14 8 3.5732 1.2803 -2.2111
15 6 5.6863 1.3633 -1.1631
16 6 6.1892 1.2645 -2.5802
17 6 7.0579 2.1547 -3.0388
18 6 7.6719 3.1320 -2.1153
19 6 7.8989 4.4437 -2.5330
20 6 8.4680 5.3524 -1.6645
21 6 8.8224 4.9626 -0.3853
22 6 9.4487 5.9589 0.5561
23 6 10.7535 6.4813 -0.0485
24 6 8.4856 7.1268 0.7774
25 6 8.6046 3.6621 0.0333
26 6 8.0315 2.7452 -0.8238
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0278 0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5137 0.8901
32 1 1.6765 1.9564 0.8900
33 1 1.6766 1.9563 -0.8900
34 1 3.7124 2.6285 4.1782
35 1 6.0456 2.2891 -0.7137
36 1 6.0531 0.5136 -0.5873
37 1 5.8418 0.4686 -3.2222
38 1 7.3171 2.1658 -4.0872
39 1 7.6268 4.7481 -3.5329
40 1 8.6408 6.3691 -1.9854
41 1 9.6585 5.4751 1.5101
42 1 10.5437 6.9651 -1.0025
43 1 11.2063 7.2022 0.6322
44 1 11.4397 5.6493 -0.2062
45 1 8.2758 7.6105 -0.1766
46 1 7.5560 6.7546 1.2082
47 1 8.9384 7.8471 1.4586
48 1 8.8839 3.3639 1.0330
49 1 7.8625 1.7302 -0.4960
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000488322512.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:55:07
Heat of formation + Delta-G solvation = -6.969441 kcal
Electronic energy + Delta-G solvation = -26615.947866 eV
Core-core repulsion = 23121.870501 eV
Total energy + Delta-G solvation = -3494.077365 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-39.60051 -38.80567 -36.23905 -35.25978 -33.59738 -32.94103 -31.63590 -30.83712
-29.28941 -27.49665 -27.15462 -25.64504 -24.59555 -23.05011 -22.28162 -21.23859
-20.09410 -19.16400 -18.66134 -17.07071 -16.19563 -15.92504 -15.49303 -15.29772
-14.76438 -14.70867 -14.17894 -13.94547 -13.75934 -13.58747 -13.51698 -13.36458
-13.06601 -12.85764 -12.63359 -12.45204 -12.25889 -12.20070 -11.86807 -11.61291
-11.47164 -11.33954 -11.15289 -11.06909 -10.98844 -10.86041 -10.78421 -10.52621
-10.43665 -10.28660 -10.05257 -9.74697 -9.33626 -9.14505 -8.65272 -8.50301
-7.82407 -7.72756 -6.51416 -4.07342 1.34099 1.70460 2.72221 3.02891
3.20231 3.29592 3.75721 4.08360 4.11261 4.46068 4.73751 4.84387
4.95468 5.14798 5.20243 5.21523 5.27131 5.43935 5.50683 5.58428
5.58699 5.63301 5.66565 5.71366 5.78916 5.80889 5.88646 5.95310
5.96353 6.04910 6.15452 6.19040 6.20276 6.26209 6.27560 6.35326
6.38980 6.40650 6.43446 6.45898 6.65995 6.77145 6.78575 6.88027
6.90580 6.99909 7.16980 7.30806 7.35994 8.05061 8.23273 8.94477
9.35765 9.70585 10.59319
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013162 B = 0.004324 C = 0.003573
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2126.760259 B = 6473.343670 C = 7835.590746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.131 4.131
3 C 0.101 3.899
4 N -0.464 5.464
5 C -0.344 4.344
6 H 0.105 0.895
7 C 0.070 3.930
8 N -0.857 5.857
9 Si 0.871 3.129
10 H -0.273 1.273
11 H -0.288 1.288
12 H -0.262 1.262
13 C 0.482 3.518
14 O -0.600 6.600
15 C -0.110 4.110
16 C -0.091 4.091
17 C -0.152 4.152
18 C -0.049 4.049
19 C -0.114 4.114
20 C -0.118 4.118
21 C -0.084 4.084
22 C -0.057 4.057
23 C -0.142 4.142
24 C -0.145 4.145
25 C -0.112 4.112
26 C -0.103 4.103
27 H 0.050 0.950
28 H 0.050 0.950
29 H 0.051 0.949
30 H 0.061 0.939
31 H 0.068 0.932
32 H 0.067 0.933
33 H 0.064 0.936
34 H 0.275 0.725
35 H 0.109 0.891
36 H 0.093 0.907
37 H 0.116 0.884
38 H 0.117 0.883
39 H 0.118 0.882
40 H 0.116 0.884
41 H 0.077 0.923
42 H 0.055 0.945
43 H 0.054 0.946
44 H 0.055 0.945
45 H 0.055 0.945
46 H 0.059 0.941
47 H 0.054 0.946
48 H 0.122 0.878
49 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.437 4.923 -5.615 11.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.169 4.169
3 C -0.022 4.022
4 N -0.184 5.184
5 C -0.471 4.471
6 H 0.122 0.878
7 C -0.137 4.137
8 N -0.492 5.492
9 Si 0.699 3.301
10 H -0.200 1.200
11 H -0.215 1.215
12 H -0.186 1.186
13 C 0.272 3.728
14 O -0.486 6.486
15 C -0.149 4.149
16 C -0.110 4.110
17 C -0.170 4.170
18 C -0.049 4.049
19 C -0.132 4.132
20 C -0.136 4.136
21 C -0.084 4.084
22 C -0.075 4.075
23 C -0.199 4.199
24 C -0.202 4.202
25 C -0.130 4.130
26 C -0.121 4.121
27 H 0.070 0.930
28 H 0.069 0.931
29 H 0.070 0.930
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.085 0.915
33 H 0.082 0.918
34 H 0.085 0.915
35 H 0.127 0.873
36 H 0.111 0.889
37 H 0.134 0.866
38 H 0.135 0.865
39 H 0.136 0.864
40 H 0.134 0.866
41 H 0.095 0.905
42 H 0.074 0.926
43 H 0.073 0.927
44 H 0.074 0.926
45 H 0.074 0.926
46 H 0.078 0.922
47 H 0.073 0.927
48 H 0.140 0.860
49 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 8.131 4.946 -5.885 11.190
hybrid contribution -0.748 0.745 0.148 1.066
sum 7.383 5.691 -5.737 10.946
Atomic orbital electron populations
1.21710 0.96418 1.01037 1.01347 1.21758 0.94771 0.97973 1.02426
1.21668 0.82710 0.96728 1.01049 1.43772 1.03887 1.64752 1.06002
1.19048 1.09770 1.29317 0.88920 0.87799 1.25272 0.96891 0.96917
0.94655 1.69769 1.43431 1.37249 0.98735 0.87064 0.80796 0.82795
0.79434 1.20039 1.21487 1.18641 1.20301 0.89346 0.79997 0.83183
1.90528 1.70586 1.55782 1.31671 1.20965 0.94134 1.04982 0.94842
1.23092 0.94071 0.97052 0.96771 1.21497 1.00943 0.96610 0.97942
1.19061 0.98308 0.93653 0.93922 1.21164 0.99562 0.92846 0.99603
1.20786 1.00146 0.99073 0.93609 1.19833 0.99519 0.94376 0.94649
1.20112 0.94854 0.94915 0.97629 1.21845 0.96553 1.00760 1.00727
1.21863 0.99481 0.97273 1.01613 1.21001 0.99535 0.92890 0.99605
1.21453 0.97472 1.00307 0.92833 0.93038 0.93055 0.93025 0.91999
0.91346 0.91474 0.91784 0.91514 0.87334 0.88935 0.86593 0.86509
0.86390 0.86641 0.90473 0.92630 0.92677 0.92632 0.92627 0.92190
0.92651 0.86032 0.85291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16
2 C -0.13 -2.59 6.23 -26.73 -0.17 -2.75 16
3 C 0.10 2.30 4.03 -4.04 -0.02 2.28 16
4 N -0.46 -11.25 2.21 -114.81 -0.25 -11.50 16
5 C -0.34 -8.79 9.09 -14.93 -0.14 -8.93 16
6 H 0.10 2.73 7.19 -52.49 -0.38 2.35 16
7 C 0.07 1.83 5.28 -17.47 -0.09 1.74 16
8 N -0.86 -23.20 13.96 55.50 0.77 -22.42 16
9 Si 0.87 20.68 25.10 -169.99 -4.27 16.41 16
10 H -0.27 -6.21 6.56 56.52 0.37 -5.84 16
11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
12 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16
13 C 0.48 11.31 7.60 -10.98 -0.08 11.22 16
14 O -0.60 -15.11 15.68 5.55 0.09 -15.02 16
15 C -0.11 -2.16 3.14 -29.03 -0.09 -2.26 16
16 C -0.09 -1.57 8.70 -36.22 -0.31 -1.89 16
17 C -0.15 -2.35 9.79 -37.57 -0.37 -2.72 16
18 C -0.05 -0.78 5.14 -105.01 -0.54 -1.32 16
19 C -0.11 -1.64 9.79 -39.20 -0.38 -2.03 16
20 C -0.12 -1.60 8.69 -39.64 -0.34 -1.94 16
21 C -0.08 -1.15 4.79 -104.54 -0.50 -1.65 16
22 C -0.06 -0.65 3.09 -91.77 -0.28 -0.93 16
23 C -0.14 -1.35 9.00 37.16 0.33 -1.02 16
24 C -0.15 -1.63 9.01 37.16 0.33 -1.29 16
25 C -0.11 -1.68 9.65 -39.64 -0.38 -2.06 16
26 C -0.10 -1.62 7.32 -39.20 -0.29 -1.91 16
27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16
30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
32 H 0.07 1.56 3.26 -51.93 -0.17 1.39 16
33 H 0.06 1.46 7.55 -51.93 -0.39 1.07 16
34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
35 H 0.11 2.21 4.78 -51.93 -0.25 1.96 16
36 H 0.09 1.71 7.52 -51.93 -0.39 1.32 16
37 H 0.12 1.93 8.05 -52.49 -0.42 1.50 16
38 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16
39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16
40 H 0.12 1.32 7.08 -52.48 -0.37 0.95 16
41 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16
42 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16
43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16
46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
48 H 0.12 1.67 7.94 -52.49 -0.42 1.25 16
49 H 0.13 1.99 6.37 -52.49 -0.33 1.65 16
LS Contribution 388.04 15.07 5.85 5.85
Total: -1.00 -29.00 388.04 -8.88 -37.87
By element:
Atomic # 1 Polarization: 16.40 SS G_CDS: -8.11 Total: 8.28 kcal
Atomic # 6 Polarization: -16.52 SS G_CDS: -2.95 Total: -19.47 kcal
Atomic # 7 Polarization: -34.45 SS G_CDS: 0.52 Total: -33.93 kcal
Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -4.27 Total: 16.41 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -29.00 -8.88 -37.87 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000488322512.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.905 kcal
(2) G-P(sol) polarization free energy of solvation -28.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds