Wall clock time and date at job start Tue Mar 31 2020 11:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46792 * 2 1 4 4 N 1.46497 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00177 * 265.79754 * 4 3 2 6 6 H 1.08001 * 119.99912 * 143.84907 * 5 4 3 7 7 C 1.38944 * 119.99895 * 323.85208 * 5 4 3 8 8 N 1.31412 * 120.00163 * 157.25764 * 7 5 4 9 9 Si 1.86802 * 120.00062 * 337.25778 * 7 5 4 10 10 H 1.48502 * 109.47055 * 93.18527 * 9 7 5 11 11 H 1.48500 * 109.47334 * 213.18295 * 9 7 5 12 12 H 1.48501 * 109.47031 * 333.18732 * 9 7 5 13 13 C 1.34777 * 119.99637 * 85.79953 * 4 3 2 14 14 O 1.21293 * 120.00476 * 0.02562 * 13 4 3 15 15 C 1.50707 * 119.99812 * 179.72153 * 13 4 3 16 16 C 1.50698 * 109.47293 * 180.27401 * 15 13 4 17 17 C 1.32566 * 119.99784 * 127.00511 * 16 15 13 18 18 C 1.47821 * 120.00093 * 8.23982 * 17 16 15 19 19 C 1.39528 * 120.13850 * 217.96695 * 18 17 16 20 20 C 1.37973 * 119.85425 * 179.76572 * 19 18 17 21 21 C 1.38345 * 120.14349 * 0.47908 * 20 19 18 22 22 C 1.50699 * 119.85907 * 179.74512 * 21 20 19 23 23 C 1.52998 * 109.47126 * 300.02276 * 22 21 20 24 24 C 1.52998 * 109.47177 * 60.02593 * 22 21 20 25 25 C 1.38347 * 120.28117 * 359.76961 * 21 20 19 26 26 C 1.37974 * 120.14519 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.47541 * 300.00124 * 1 2 3 28 28 H 1.09002 * 109.47318 * 60.00599 * 1 2 3 29 29 H 1.09009 * 109.46603 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47144 * 239.99747 * 2 1 3 31 31 H 1.09002 * 109.46800 * 119.99307 * 2 1 3 32 32 H 1.09003 * 109.47179 * 59.99654 * 3 2 1 33 33 H 1.09002 * 109.46700 * 299.99780 * 3 2 1 34 34 H 0.96996 * 120.00237 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47047 * 300.27718 * 15 13 4 36 36 H 1.09005 * 109.46890 * 60.27778 * 15 13 4 37 37 H 1.07997 * 120.00079 * 307.01290 * 16 15 13 38 38 H 1.07997 * 119.99912 * 188.23362 * 17 16 15 39 39 H 1.08001 * 120.07262 * 359.97070 * 19 18 17 40 40 H 1.08004 * 119.92924 * 180.23251 * 20 19 18 41 41 H 1.09004 * 109.46986 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47044 * 60.00212 * 23 22 21 43 43 H 1.09002 * 109.46861 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47485 * 299.99970 * 23 22 21 45 45 H 1.09003 * 109.46681 * 300.00219 * 24 22 21 46 46 H 1.09006 * 109.47182 * 59.99755 * 24 22 21 47 47 H 1.08993 * 109.47428 * 179.97438 * 24 22 21 48 48 H 1.08001 * 119.92697 * 179.97438 * 25 21 20 49 49 H 1.07993 * 120.07386 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5298 1.1850 6 1 5.1140 0.9862 1.3157 7 6 3.6954 2.3175 2.2172 8 7 4.0579 2.0789 3.4576 9 14 2.5151 3.7159 1.8418 10 1 1.1171 3.2306 1.9662 11 1 2.7410 4.8258 2.8023 12 1 2.7487 4.2030 0.4586 13 6 4.1792 1.3570 -1.1632 14 8 3.5732 1.2803 -2.2111 15 6 5.6863 1.3633 -1.1631 16 6 6.1892 1.2645 -2.5802 17 6 7.0579 2.1547 -3.0388 18 6 7.6719 3.1320 -2.1153 19 6 7.8989 4.4437 -2.5330 20 6 8.4680 5.3524 -1.6645 21 6 8.8224 4.9626 -0.3853 22 6 9.4487 5.9589 0.5561 23 6 10.7535 6.4813 -0.0485 24 6 8.4856 7.1268 0.7774 25 6 8.6046 3.6621 0.0333 26 6 8.0315 2.7452 -0.8238 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7124 2.6285 4.1782 35 1 6.0456 2.2891 -0.7137 36 1 6.0531 0.5136 -0.5873 37 1 5.8418 0.4686 -3.2222 38 1 7.3171 2.1658 -4.0872 39 1 7.6268 4.7481 -3.5329 40 1 8.6408 6.3691 -1.9854 41 1 9.6585 5.4751 1.5101 42 1 10.5437 6.9651 -1.0025 43 1 11.2063 7.2022 0.6322 44 1 11.4397 5.6493 -0.2062 45 1 8.2758 7.6105 -0.1766 46 1 7.5560 6.7546 1.2082 47 1 8.9384 7.8471 1.4586 48 1 8.8839 3.3639 1.0330 49 1 7.8625 1.7302 -0.4960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488322512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:07 Heat of formation + Delta-G solvation = -6.969441 kcal Electronic energy + Delta-G solvation = -26615.947866 eV Core-core repulsion = 23121.870501 eV Total energy + Delta-G solvation = -3494.077365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.60051 -38.80567 -36.23905 -35.25978 -33.59738 -32.94103 -31.63590 -30.83712 -29.28941 -27.49665 -27.15462 -25.64504 -24.59555 -23.05011 -22.28162 -21.23859 -20.09410 -19.16400 -18.66134 -17.07071 -16.19563 -15.92504 -15.49303 -15.29772 -14.76438 -14.70867 -14.17894 -13.94547 -13.75934 -13.58747 -13.51698 -13.36458 -13.06601 -12.85764 -12.63359 -12.45204 -12.25889 -12.20070 -11.86807 -11.61291 -11.47164 -11.33954 -11.15289 -11.06909 -10.98844 -10.86041 -10.78421 -10.52621 -10.43665 -10.28660 -10.05257 -9.74697 -9.33626 -9.14505 -8.65272 -8.50301 -7.82407 -7.72756 -6.51416 -4.07342 1.34099 1.70460 2.72221 3.02891 3.20231 3.29592 3.75721 4.08360 4.11261 4.46068 4.73751 4.84387 4.95468 5.14798 5.20243 5.21523 5.27131 5.43935 5.50683 5.58428 5.58699 5.63301 5.66565 5.71366 5.78916 5.80889 5.88646 5.95310 5.96353 6.04910 6.15452 6.19040 6.20276 6.26209 6.27560 6.35326 6.38980 6.40650 6.43446 6.45898 6.65995 6.77145 6.78575 6.88027 6.90580 6.99909 7.16980 7.30806 7.35994 8.05061 8.23273 8.94477 9.35765 9.70585 10.59319 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.004324 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.760259 B = 6473.343670 C = 7835.590746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.101 3.899 4 N -0.464 5.464 5 C -0.344 4.344 6 H 0.105 0.895 7 C 0.070 3.930 8 N -0.857 5.857 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.482 3.518 14 O -0.600 6.600 15 C -0.110 4.110 16 C -0.091 4.091 17 C -0.152 4.152 18 C -0.049 4.049 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.084 4.084 22 C -0.057 4.057 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.103 4.103 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.275 0.725 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.122 0.878 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 4.923 -5.615 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.022 4.022 4 N -0.184 5.184 5 C -0.471 4.471 6 H 0.122 0.878 7 C -0.137 4.137 8 N -0.492 5.492 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.186 1.186 13 C 0.272 3.728 14 O -0.486 6.486 15 C -0.149 4.149 16 C -0.110 4.110 17 C -0.170 4.170 18 C -0.049 4.049 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.075 4.075 23 C -0.199 4.199 24 C -0.202 4.202 25 C -0.130 4.130 26 C -0.121 4.121 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.140 0.860 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.131 4.946 -5.885 11.190 hybrid contribution -0.748 0.745 0.148 1.066 sum 7.383 5.691 -5.737 10.946 Atomic orbital electron populations 1.21710 0.96418 1.01037 1.01347 1.21758 0.94771 0.97973 1.02426 1.21668 0.82710 0.96728 1.01049 1.43772 1.03887 1.64752 1.06002 1.19048 1.09770 1.29317 0.88920 0.87799 1.25272 0.96891 0.96917 0.94655 1.69769 1.43431 1.37249 0.98735 0.87064 0.80796 0.82795 0.79434 1.20039 1.21487 1.18641 1.20301 0.89346 0.79997 0.83183 1.90528 1.70586 1.55782 1.31671 1.20965 0.94134 1.04982 0.94842 1.23092 0.94071 0.97052 0.96771 1.21497 1.00943 0.96610 0.97942 1.19061 0.98308 0.93653 0.93922 1.21164 0.99562 0.92846 0.99603 1.20786 1.00146 0.99073 0.93609 1.19833 0.99519 0.94376 0.94649 1.20112 0.94854 0.94915 0.97629 1.21845 0.96553 1.00760 1.00727 1.21863 0.99481 0.97273 1.01613 1.21001 0.99535 0.92890 0.99605 1.21453 0.97472 1.00307 0.92833 0.93038 0.93055 0.93025 0.91999 0.91346 0.91474 0.91784 0.91514 0.87334 0.88935 0.86593 0.86509 0.86390 0.86641 0.90473 0.92630 0.92677 0.92632 0.92627 0.92190 0.92651 0.86032 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.59 6.23 -26.73 -0.17 -2.75 16 3 C 0.10 2.30 4.03 -4.04 -0.02 2.28 16 4 N -0.46 -11.25 2.21 -114.81 -0.25 -11.50 16 5 C -0.34 -8.79 9.09 -14.93 -0.14 -8.93 16 6 H 0.10 2.73 7.19 -52.49 -0.38 2.35 16 7 C 0.07 1.83 5.28 -17.47 -0.09 1.74 16 8 N -0.86 -23.20 13.96 55.50 0.77 -22.42 16 9 Si 0.87 20.68 25.10 -169.99 -4.27 16.41 16 10 H -0.27 -6.21 6.56 56.52 0.37 -5.84 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.48 11.31 7.60 -10.98 -0.08 11.22 16 14 O -0.60 -15.11 15.68 5.55 0.09 -15.02 16 15 C -0.11 -2.16 3.14 -29.03 -0.09 -2.26 16 16 C -0.09 -1.57 8.70 -36.22 -0.31 -1.89 16 17 C -0.15 -2.35 9.79 -37.57 -0.37 -2.72 16 18 C -0.05 -0.78 5.14 -105.01 -0.54 -1.32 16 19 C -0.11 -1.64 9.79 -39.20 -0.38 -2.03 16 20 C -0.12 -1.60 8.69 -39.64 -0.34 -1.94 16 21 C -0.08 -1.15 4.79 -104.54 -0.50 -1.65 16 22 C -0.06 -0.65 3.09 -91.77 -0.28 -0.93 16 23 C -0.14 -1.35 9.00 37.16 0.33 -1.02 16 24 C -0.15 -1.63 9.01 37.16 0.33 -1.29 16 25 C -0.11 -1.68 9.65 -39.64 -0.38 -2.06 16 26 C -0.10 -1.62 7.32 -39.20 -0.29 -1.91 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.56 3.26 -51.93 -0.17 1.39 16 33 H 0.06 1.46 7.55 -51.93 -0.39 1.07 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.11 2.21 4.78 -51.93 -0.25 1.96 16 36 H 0.09 1.71 7.52 -51.93 -0.39 1.32 16 37 H 0.12 1.93 8.05 -52.49 -0.42 1.50 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.32 7.08 -52.48 -0.37 0.95 16 41 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 42 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.12 1.67 7.94 -52.49 -0.42 1.25 16 49 H 0.13 1.99 6.37 -52.49 -0.33 1.65 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -29.00 388.04 -8.88 -37.87 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.11 Total: 8.28 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.95 Total: -19.47 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.52 Total: -33.93 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.27 Total: 16.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.00 -8.88 -37.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488322512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.905 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds