Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46792 * 2 1 4 4 N 1.46497 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00177 * 265.79754 * 4 3 2 6 6 H 1.08001 * 119.99912 * 143.84907 * 5 4 3 7 7 C 1.38944 * 119.99895 * 323.85208 * 5 4 3 8 8 N 1.31412 * 120.00163 * 157.25764 * 7 5 4 9 9 Si 1.86802 * 120.00062 * 337.25778 * 7 5 4 10 10 H 1.48502 * 109.47055 * 93.18527 * 9 7 5 11 11 H 1.48500 * 109.47334 * 213.18295 * 9 7 5 12 12 H 1.48501 * 109.47031 * 333.18732 * 9 7 5 13 13 C 1.34777 * 119.99637 * 85.79953 * 4 3 2 14 14 O 1.21293 * 120.00476 * 0.02562 * 13 4 3 15 15 C 1.50707 * 119.99812 * 179.72153 * 13 4 3 16 16 C 1.50698 * 109.47293 * 180.27401 * 15 13 4 17 17 C 1.32566 * 119.99784 * 127.00511 * 16 15 13 18 18 C 1.47821 * 120.00093 * 8.23982 * 17 16 15 19 19 C 1.39528 * 120.13850 * 217.96695 * 18 17 16 20 20 C 1.37973 * 119.85425 * 179.76572 * 19 18 17 21 21 C 1.38345 * 120.14349 * 0.47908 * 20 19 18 22 22 C 1.50699 * 119.85907 * 179.74512 * 21 20 19 23 23 C 1.52998 * 109.47126 * 300.02276 * 22 21 20 24 24 C 1.52998 * 109.47177 * 60.02593 * 22 21 20 25 25 C 1.38347 * 120.28117 * 359.76961 * 21 20 19 26 26 C 1.37974 * 120.14519 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.47541 * 300.00124 * 1 2 3 28 28 H 1.09002 * 109.47318 * 60.00599 * 1 2 3 29 29 H 1.09009 * 109.46603 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47144 * 239.99747 * 2 1 3 31 31 H 1.09002 * 109.46800 * 119.99307 * 2 1 3 32 32 H 1.09003 * 109.47179 * 59.99654 * 3 2 1 33 33 H 1.09002 * 109.46700 * 299.99780 * 3 2 1 34 34 H 0.96996 * 120.00237 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47047 * 300.27718 * 15 13 4 36 36 H 1.09005 * 109.46890 * 60.27778 * 15 13 4 37 37 H 1.07997 * 120.00079 * 307.01290 * 16 15 13 38 38 H 1.07997 * 119.99912 * 188.23362 * 17 16 15 39 39 H 1.08001 * 120.07262 * 359.97070 * 19 18 17 40 40 H 1.08004 * 119.92924 * 180.23251 * 20 19 18 41 41 H 1.09004 * 109.46986 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47044 * 60.00212 * 23 22 21 43 43 H 1.09002 * 109.46861 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47485 * 299.99970 * 23 22 21 45 45 H 1.09003 * 109.46681 * 300.00219 * 24 22 21 46 46 H 1.09006 * 109.47182 * 59.99755 * 24 22 21 47 47 H 1.08993 * 109.47428 * 179.97438 * 24 22 21 48 48 H 1.08001 * 119.92697 * 179.97438 * 25 21 20 49 49 H 1.07993 * 120.07386 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5298 1.1850 6 1 5.1140 0.9862 1.3157 7 6 3.6954 2.3175 2.2172 8 7 4.0579 2.0789 3.4576 9 14 2.5151 3.7159 1.8418 10 1 1.1171 3.2306 1.9662 11 1 2.7410 4.8258 2.8023 12 1 2.7487 4.2030 0.4586 13 6 4.1792 1.3570 -1.1632 14 8 3.5732 1.2803 -2.2111 15 6 5.6863 1.3633 -1.1631 16 6 6.1892 1.2645 -2.5802 17 6 7.0579 2.1547 -3.0388 18 6 7.6719 3.1320 -2.1153 19 6 7.8989 4.4437 -2.5330 20 6 8.4680 5.3524 -1.6645 21 6 8.8224 4.9626 -0.3853 22 6 9.4487 5.9589 0.5561 23 6 10.7535 6.4813 -0.0485 24 6 8.4856 7.1268 0.7774 25 6 8.6046 3.6621 0.0333 26 6 8.0315 2.7452 -0.8238 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7124 2.6285 4.1782 35 1 6.0456 2.2891 -0.7137 36 1 6.0531 0.5136 -0.5873 37 1 5.8418 0.4686 -3.2222 38 1 7.3171 2.1658 -4.0872 39 1 7.6268 4.7481 -3.5329 40 1 8.6408 6.3691 -1.9854 41 1 9.6585 5.4751 1.5101 42 1 10.5437 6.9651 -1.0025 43 1 11.2063 7.2022 0.6322 44 1 11.4397 5.6493 -0.2062 45 1 8.2758 7.6105 -0.1766 46 1 7.5560 6.7546 1.2082 47 1 8.9384 7.8471 1.4586 48 1 8.8839 3.3639 1.0330 49 1 7.8625 1.7302 -0.4960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488322512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = -19.083306 kcal Electronic energy + Delta-G solvation = -26616.473162 eV Core-core repulsion = 23121.870501 eV Total energy + Delta-G solvation = -3494.602661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98782 -40.38176 -37.54018 -36.91722 -34.95174 -34.56665 -33.51789 -31.98791 -30.57598 -28.85304 -27.96634 -27.37938 -26.38639 -24.20628 -23.41827 -22.80726 -21.33730 -20.74926 -20.08095 -18.83907 -18.04229 -17.27057 -16.89431 -16.80092 -16.23150 -15.96608 -15.80163 -15.58192 -15.15565 -14.78708 -14.72019 -14.56072 -14.36688 -14.22817 -14.18016 -13.93223 -13.61941 -13.34529 -13.26244 -13.09223 -12.88397 -12.71559 -12.58803 -12.52966 -12.20967 -12.18625 -12.08719 -11.97392 -11.92845 -11.54544 -11.49619 -11.42586 -11.07288 -10.64155 -10.36273 -9.79238 -9.71213 -8.96350 -8.54619 -6.11850 0.15365 0.55656 1.12759 1.26598 1.37110 1.46212 1.88159 2.13936 2.65289 2.91889 3.01133 3.75389 3.88645 3.91723 3.95214 4.08605 4.11440 4.14828 4.25721 4.27837 4.33958 4.37305 4.52191 4.54464 4.55749 4.59201 4.63298 4.69315 4.74976 4.81994 4.91694 4.96170 5.00041 5.01607 5.07752 5.08298 5.18905 5.20996 5.23403 5.28444 5.34618 5.40829 5.46010 5.47847 5.56336 5.71445 5.78784 5.92410 6.03822 6.16592 6.25156 6.93726 7.40425 7.77865 8.59414 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.004324 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.760259 B = 6473.343670 C = 7835.590746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.475 5.475 5 C -0.340 4.340 6 H 0.088 0.912 7 C 0.038 3.962 8 N -0.888 5.888 9 Si 0.914 3.086 10 H -0.255 1.255 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.474 3.526 14 O -0.617 6.617 15 C -0.099 4.099 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.075 4.075 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.084 4.084 22 C -0.058 4.058 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.116 4.116 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.280 0.720 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.124 0.876 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 6.413 -6.568 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.029 4.029 4 N -0.195 5.195 5 C -0.467 4.467 6 H 0.106 0.894 7 C -0.167 4.167 8 N -0.525 5.525 9 Si 0.741 3.259 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.202 1.202 13 C 0.265 3.735 14 O -0.504 6.504 15 C -0.138 4.138 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.075 4.075 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.084 4.084 22 C -0.077 4.077 23 C -0.194 4.194 24 C -0.201 4.201 25 C -0.150 4.150 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.142 0.858 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.195 6.428 -6.832 12.456 hybrid contribution -0.677 0.314 0.425 0.859 sum 7.518 6.742 -6.407 11.959 Atomic orbital electron populations 1.21682 0.93300 1.02926 1.01993 1.21682 0.97475 0.95702 1.01382 1.21805 0.81983 0.98550 1.00523 1.43928 1.04687 1.65116 1.05812 1.18942 1.09414 1.28981 0.89379 0.89425 1.25697 0.98310 0.98235 0.94459 1.69814 1.44968 1.38288 0.99386 0.86371 0.80471 0.80783 0.78288 1.18092 1.20887 1.20206 1.20973 0.90943 0.78942 0.82630 1.90496 1.71416 1.56399 1.32112 1.20863 0.91408 1.04654 0.96851 1.22952 0.96282 0.98884 0.95588 1.21780 0.98781 0.94810 0.99076 1.19236 0.99528 0.94664 0.94039 1.21467 0.98929 0.92329 1.00723 1.21098 0.99355 1.00134 0.93227 1.20173 0.98600 0.94257 0.95336 1.20179 0.95821 0.94498 0.97170 1.21804 0.95234 1.01022 1.01296 1.21859 0.98461 0.97445 1.02332 1.21190 1.00225 0.93713 0.99849 1.21517 0.98163 1.00351 0.93387 0.92626 0.92156 0.90580 0.92832 0.92518 0.91939 0.92117 0.91039 0.88129 0.88744 0.86189 0.83753 0.84356 0.84110 0.90733 0.91936 0.91077 0.92858 0.91867 0.94454 0.90804 0.85783 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.91 71.98 0.71 -3.58 16 2 C -0.12 -4.85 6.23 30.60 0.19 -4.65 16 3 C 0.09 4.25 4.03 86.38 0.35 4.60 16 4 N -0.48 -23.36 2.21 -635.52 -1.40 -24.76 16 5 C -0.34 -17.78 9.09 84.04 0.76 -17.02 16 6 H 0.09 4.79 7.19 -2.91 -0.02 4.77 16 7 C 0.04 2.00 5.28 84.92 0.45 2.45 16 8 N -0.89 -48.58 13.96 21.66 0.30 -48.28 16 9 Si 0.91 42.38 25.10 68.60 1.72 44.11 16 10 H -0.26 -11.00 6.56 99.48 0.65 -10.35 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 C 0.47 22.61 7.60 87.66 0.67 23.27 16 14 O -0.62 -31.29 15.68 -3.07 -0.05 -31.33 16 15 C -0.10 -3.98 3.14 29.10 0.09 -3.89 16 16 C -0.12 -4.08 8.70 24.53 0.21 -3.87 16 17 C -0.13 -3.79 9.79 23.66 0.23 -3.56 16 18 C -0.07 -2.30 5.14 -20.12 -0.10 -2.41 16 19 C -0.12 -3.16 9.79 22.52 0.22 -2.94 16 20 C -0.12 -3.02 8.69 22.23 0.19 -2.83 16 21 C -0.08 -2.22 4.79 -19.81 -0.09 -2.32 16 22 C -0.06 -1.25 3.09 -11.54 -0.04 -1.28 16 23 C -0.14 -2.26 9.00 71.98 0.65 -1.62 16 24 C -0.14 -2.98 9.01 71.98 0.65 -2.33 16 25 C -0.13 -3.99 9.65 22.23 0.21 -3.77 16 26 C -0.12 -3.74 7.32 22.52 0.16 -3.58 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.86 3.26 -2.39 -0.01 2.85 16 33 H 0.06 2.75 7.55 -2.39 -0.02 2.73 16 34 H 0.28 14.30 8.31 -92.71 -0.77 13.52 16 35 H 0.10 4.22 4.78 -2.39 -0.01 4.21 16 36 H 0.09 3.66 7.52 -2.38 -0.02 3.64 16 37 H 0.12 3.98 8.05 -2.91 -0.02 3.96 16 38 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 39 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.14 2.77 7.08 -2.91 -0.02 2.75 16 41 H 0.07 1.62 7.87 -2.38 -0.02 1.60 16 42 H 0.06 0.95 7.37 -2.38 -0.02 0.94 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 1.20 7.38 -2.39 -0.02 1.18 16 46 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.12 3.54 7.94 -2.91 -0.02 3.52 16 49 H 0.12 3.96 6.37 -2.91 -0.02 3.94 16 Total: -1.00 -61.86 388.04 6.96 -54.90 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.86 Total: 34.68 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 5.52 Total: -29.31 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.10 Total: -73.05 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.72 Total: 44.11 kcal Total: -61.86 6.96 -54.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488322512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.817 kcal (2) G-P(sol) polarization free energy of solvation -61.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds