Wall clock time and date at job start Tue Mar 31 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 H 1.09006 * 109.47064 * 305.00257 * 3 2 1 5 5 C 1.50697 * 109.47308 * 184.99865 * 3 2 1 6 6 H 1.08001 * 120.00626 * 240.00111 * 5 3 2 7 7 C 1.37881 * 119.99651 * 60.00278 * 5 3 2 8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99692 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47397 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47106 * 119.99938 * 9 7 5 12 12 H 1.48504 * 109.46852 * 239.99356 * 9 7 5 13 13 N 1.46498 * 109.47372 * 64.99789 * 3 2 1 14 14 C 1.34774 * 120.00208 * 275.00265 * 13 3 2 15 15 O 1.21282 * 120.00121 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00034 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47072 * 185.64532 * 16 14 13 18 18 H 1.09002 * 110.27236 * 307.75553 * 17 16 14 19 19 C 1.54347 * 110.30276 * 69.93646 * 17 16 14 20 20 C 1.54347 * 102.40258 * 145.27517 * 19 17 16 21 21 H 1.08998 * 110.30420 * 214.71993 * 20 19 17 22 22 C 1.52994 * 110.38599 * 92.60983 * 20 19 17 23 23 C 1.51374 * 105.16442 * 333.64255 * 20 19 17 24 24 C 1.38257 * 109.75601 * 17.20139 * 23 20 19 25 25 C 1.38451 * 119.84424 * 179.97438 * 24 23 20 26 26 C 1.38141 * 120.22040 * 0.02562 * 25 24 23 27 27 C 1.38214 * 119.93469 * 359.97438 * 26 25 24 28 28 C 1.38147 * 119.93242 * 359.97438 * 27 26 25 29 29 C 1.50704 * 119.89476 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.46965 * 300.00216 * 1 2 3 31 31 H 1.09003 * 109.47101 * 59.99867 * 1 2 3 32 32 H 1.08995 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46965 * 239.99784 * 2 1 3 34 34 H 1.08993 * 109.47082 * 120.00224 * 2 1 3 35 35 H 0.97002 * 120.00453 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99938 * 94.99768 * 13 3 2 37 37 H 1.09002 * 109.47098 * 65.64785 * 16 14 13 38 38 H 1.08996 * 109.47290 * 305.64629 * 16 14 13 39 39 H 1.08999 * 110.82200 * 263.50160 * 19 17 16 40 40 H 1.09005 * 110.82408 * 27.04354 * 19 17 16 41 41 H 1.09009 * 109.47261 * 302.75310 * 22 20 19 42 42 H 1.08999 * 109.47713 * 62.75399 * 22 20 19 43 43 H 1.08998 * 109.47280 * 182.75351 * 22 20 19 44 44 H 1.08003 * 119.89133 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.03796 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.03515 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.47130 * 270.02731 * 29 28 27 48 48 H 1.09000 * 109.46838 * 30.02575 * 29 28 27 49 49 H 1.08999 * 109.47043 * 150.02481 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6092 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3392 2.6327 0.4341 16 6 0.0363 3.3378 2.6548 17 6 -1.4290 3.7698 2.5719 18 1 -1.5993 4.3564 1.6691 19 6 -2.3537 2.5341 2.5925 20 6 -3.5792 3.0502 3.3762 21 1 -4.0032 2.2512 3.9843 22 6 -4.6338 3.6006 2.4141 23 6 -3.0463 4.1571 4.2606 24 6 -1.8107 4.5707 3.7983 25 6 -1.1314 5.5812 4.4573 26 6 -1.6839 6.1764 5.5748 27 6 -2.9191 5.7629 6.0370 28 6 -3.5989 4.7555 5.3802 29 6 -4.9454 4.3049 5.8852 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0612 -2.9499 36 1 2.2720 2.1231 1.9978 37 1 0.6647 4.2136 2.8167 38 1 0.1634 2.6412 3.4835 39 1 -2.6352 2.2439 1.5803 40 1 -1.8798 1.7043 3.1170 41 1 -4.1934 4.3904 1.8053 42 1 -4.9893 2.7987 1.7670 43 1 -5.4701 4.0050 2.9843 44 1 -0.1663 5.9052 4.0966 45 1 -1.1512 6.9641 6.0869 46 1 -3.3527 6.2274 6.9103 47 1 -4.8118 3.4975 6.6052 48 1 -5.4512 5.1415 6.3672 49 1 -5.5470 3.9498 5.0485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488928103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:19 Heat of formation + Delta-G solvation = -43.083046 kcal Electronic energy + Delta-G solvation = -26690.333353 eV Core-core repulsion = 23194.689985 eV Total energy + Delta-G solvation = -3495.643368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67864 -38.89402 -36.37676 -34.98901 -33.69373 -32.35042 -31.44043 -30.65335 -29.51872 -27.55438 -27.04203 -26.19666 -24.20903 -22.89664 -21.94080 -20.68386 -20.30637 -19.35256 -19.05609 -17.11922 -16.23917 -15.77816 -15.61345 -15.36772 -14.98459 -14.77880 -14.45951 -14.09640 -13.90687 -13.63017 -13.20023 -13.05121 -12.74492 -12.66503 -12.58195 -12.50821 -12.15325 -11.98286 -11.89353 -11.60938 -11.47507 -11.26549 -11.12433 -10.99268 -10.92060 -10.81404 -10.64765 -10.60728 -10.38914 -10.29065 -10.13538 -9.60558 -9.02445 -8.92329 -8.60906 -8.51943 -8.47371 -7.76289 -6.11470 -4.20562 1.31721 1.33394 3.23525 3.31605 3.34113 3.49401 3.66789 4.14014 4.37841 4.38665 4.57991 4.81045 4.88017 4.97587 5.03712 5.14549 5.19852 5.22222 5.32467 5.41646 5.43112 5.47445 5.51886 5.58863 5.68730 5.77716 5.78029 5.91714 5.95126 5.99430 6.03889 6.19500 6.22670 6.32591 6.39897 6.41381 6.46841 6.48679 6.55626 6.68271 6.69910 6.97656 7.06618 7.22368 7.39982 7.51180 7.64335 7.76498 7.93087 8.20626 8.73006 8.80743 9.20856 9.47466 10.93801 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002918 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.134437 B = 9593.183313 C =10437.565453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.548 6.548 16 C -0.135 4.135 17 C -0.030 4.030 18 H 0.096 0.904 19 C -0.105 4.105 20 C -0.054 4.054 21 H 0.076 0.924 22 C -0.139 4.139 23 C -0.088 4.088 24 C -0.080 4.080 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.075 4.075 29 C -0.115 4.115 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.021 0.979 33 H 0.098 0.902 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.387 0.613 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 7.756 15.691 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.049 4.049 18 H 0.114 0.886 19 C -0.143 4.143 20 C -0.072 4.072 21 H 0.094 0.906 22 C -0.196 4.196 23 C -0.088 4.088 24 C -0.080 4.080 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.145 4.145 28 C -0.075 4.075 29 C -0.172 4.172 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.219 0.781 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.939 7.618 14.808 21.716 hybrid contribution 1.509 0.058 0.359 1.552 sum -12.430 7.676 15.167 21.059 Atomic orbital electron populations 1.21836 0.98335 0.97907 1.01288 1.21923 0.92653 0.99891 1.02139 1.18747 0.94061 0.89140 0.81204 0.93402 1.21291 0.90880 1.38776 1.06183 0.92128 1.24890 0.98530 0.94866 0.95438 1.69905 1.34979 1.37752 1.09348 0.86427 0.85015 0.77757 0.78096 1.19766 1.20893 1.20910 1.46512 1.14815 1.56119 1.18434 1.20334 0.82659 0.79331 0.89111 1.90649 1.51389 1.59972 1.40709 1.21769 0.96862 1.01487 0.97445 1.20421 0.93632 0.95518 0.95292 0.88565 1.22417 0.94009 0.96559 1.01269 1.20650 0.96476 0.94990 0.95072 0.90604 1.21757 0.97714 1.01373 0.98741 1.20428 0.95312 0.97999 0.95105 1.20677 0.94939 0.95951 0.96427 1.20641 1.00070 0.96427 0.95936 1.20982 0.95829 1.00052 0.96790 1.20871 0.95587 0.97879 1.00184 1.19415 0.96699 0.96485 0.94924 1.20794 0.93723 1.01331 1.01307 0.94097 0.93200 0.96038 0.88423 0.95180 0.92664 0.78106 0.89506 0.89672 0.89359 0.91322 0.92307 0.92060 0.92863 0.86279 0.86139 0.86305 0.91398 0.91857 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.39 5.02 -54.93 -0.28 -14.66 16 14 C 0.50 9.41 6.15 -10.98 -0.07 9.34 16 15 O -0.55 -11.99 12.28 5.56 0.07 -11.92 16 16 C -0.14 -1.91 5.03 -27.88 -0.14 -2.05 16 17 C -0.03 -0.41 2.47 -90.74 -0.22 -0.64 16 18 H 0.10 1.47 7.80 -51.93 -0.40 1.07 16 19 C -0.11 -1.40 5.38 -25.32 -0.14 -1.53 16 20 C -0.05 -0.60 2.83 -90.74 -0.26 -0.86 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 22 C -0.14 -1.44 9.11 37.15 0.34 -1.11 16 23 C -0.09 -1.05 5.32 -104.20 -0.55 -1.60 16 24 C -0.08 -1.00 5.60 -104.21 -0.58 -1.59 16 25 C -0.11 -1.29 9.68 -39.54 -0.38 -1.67 16 26 C -0.12 -1.21 10.05 -39.63 -0.40 -1.61 16 27 C -0.13 -1.27 9.69 -39.62 -0.38 -1.65 16 28 C -0.08 -0.80 5.88 -104.57 -0.62 -1.42 16 29 C -0.11 -0.93 9.87 36.01 0.36 -0.58 16 30 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.39 6.88 8.54 -40.82 -0.35 6.53 16 37 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 38 H 0.08 1.09 7.97 -51.93 -0.41 0.68 16 39 H 0.09 1.30 7.60 -51.93 -0.39 0.91 16 40 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 41 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.49 6.92 -51.93 -0.36 0.13 16 44 H 0.12 1.22 7.67 -52.48 -0.40 0.82 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 49 H 0.07 0.53 6.42 -51.93 -0.33 0.20 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -29.50 381.17 -10.49 -39.99 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.20 Total: 8.27 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.43 Total: -18.93 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.35 Total: -38.72 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.50 -10.49 -39.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488928103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.094 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds