Wall clock time and date at job start Tue Mar 31 2020 11:47:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47255 * 2 1
4 4 H 1.09006 * 109.47064 * 305.00257 * 3 2 1
5 5 C 1.50697 * 109.47308 * 184.99865 * 3 2 1
6 6 H 1.08001 * 120.00626 * 240.00111 * 5 3 2
7 7 C 1.37881 * 119.99651 * 60.00278 * 5 3 2
8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 3
9 9 Si 1.86806 * 119.99692 * 180.02562 * 7 5 3
10 10 H 1.48494 * 109.47397 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47106 * 119.99938 * 9 7 5
12 12 H 1.48504 * 109.46852 * 239.99356 * 9 7 5
13 13 N 1.46498 * 109.47372 * 64.99789 * 3 2 1
14 14 C 1.34774 * 120.00208 * 275.00265 * 13 3 2
15 15 O 1.21282 * 120.00121 * 359.97438 * 14 13 3
16 16 C 1.50706 * 120.00034 * 179.97438 * 14 13 3
17 17 C 1.52997 * 109.47072 * 185.64532 * 16 14 13
18 18 H 1.09002 * 110.27236 * 307.75553 * 17 16 14
19 19 C 1.54347 * 110.30276 * 69.93646 * 17 16 14
20 20 C 1.54347 * 102.40258 * 145.27517 * 19 17 16
21 21 H 1.08998 * 110.30420 * 214.71993 * 20 19 17
22 22 C 1.52994 * 110.38599 * 92.60983 * 20 19 17
23 23 C 1.51374 * 105.16442 * 333.64255 * 20 19 17
24 24 C 1.38257 * 109.75601 * 17.20139 * 23 20 19
25 25 C 1.38451 * 119.84424 * 179.97438 * 24 23 20
26 26 C 1.38141 * 120.22040 * 0.02562 * 25 24 23
27 27 C 1.38214 * 119.93469 * 359.97438 * 26 25 24
28 28 C 1.38147 * 119.93242 * 359.97438 * 27 26 25
29 29 C 1.50704 * 119.89476 * 179.97438 * 28 27 26
30 30 H 1.09002 * 109.46965 * 300.00216 * 1 2 3
31 31 H 1.09003 * 109.47101 * 59.99867 * 1 2 3
32 32 H 1.08995 * 109.47373 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.46965 * 239.99784 * 2 1 3
34 34 H 1.08993 * 109.47082 * 120.00224 * 2 1 3
35 35 H 0.97002 * 120.00453 * 179.97438 * 8 7 5
36 36 H 0.97005 * 119.99938 * 94.99768 * 13 3 2
37 37 H 1.09002 * 109.47098 * 65.64785 * 16 14 13
38 38 H 1.08996 * 109.47290 * 305.64629 * 16 14 13
39 39 H 1.08999 * 110.82200 * 263.50160 * 19 17 16
40 40 H 1.09005 * 110.82408 * 27.04354 * 19 17 16
41 41 H 1.09009 * 109.47261 * 302.75310 * 22 20 19
42 42 H 1.08999 * 109.47713 * 62.75399 * 22 20 19
43 43 H 1.08998 * 109.47280 * 182.75351 * 22 20 19
44 44 H 1.08003 * 119.89133 * 180.02562 * 25 24 23
45 45 H 1.08000 * 120.03796 * 179.97438 * 26 25 24
46 46 H 1.08003 * 120.03515 * 180.02562 * 27 26 25
47 47 H 1.08994 * 109.47130 * 270.02731 * 29 28 27
48 48 H 1.09000 * 109.46838 * 30.02575 * 29 28 27
49 49 H 1.08999 * 109.47043 * 150.02481 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4443 -0.1238
6 1 4.1473 1.8888 0.6523
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3366 -2.1729
9 14 6.0050 0.8800 -1.3811
10 1 6.5988 1.5451 -0.1937
11 1 6.4962 -0.5191 -1.4627
12 1 6.4000 1.6156 -2.6092
13 7 1.6525 2.0975 1.2517
14 6 0.4352 2.6644 1.3669
15 8 -0.3392 2.6327 0.4341
16 6 0.0363 3.3378 2.6548
17 6 -1.4290 3.7698 2.5719
18 1 -1.5993 4.3564 1.6691
19 6 -2.3537 2.5341 2.5925
20 6 -3.5792 3.0502 3.3762
21 1 -4.0032 2.2512 3.9843
22 6 -4.6338 3.6006 2.4141
23 6 -3.0463 4.1571 4.2606
24 6 -1.8107 4.5707 3.7983
25 6 -1.1314 5.5812 4.4573
26 6 -1.6839 6.1764 5.5748
27 6 -2.9191 5.7629 6.0370
28 6 -3.5989 4.7555 5.3802
29 6 -4.9454 4.3049 5.8852
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8899
35 1 3.8293 -0.0612 -2.9499
36 1 2.2720 2.1231 1.9978
37 1 0.6647 4.2136 2.8167
38 1 0.1634 2.6412 3.4835
39 1 -2.6352 2.2439 1.5803
40 1 -1.8798 1.7043 3.1170
41 1 -4.1934 4.3904 1.8053
42 1 -4.9893 2.7987 1.7670
43 1 -5.4701 4.0050 2.9843
44 1 -0.1663 5.9052 4.0966
45 1 -1.1512 6.9641 6.0869
46 1 -3.3527 6.2274 6.9103
47 1 -4.8118 3.4975 6.6052
48 1 -5.4512 5.1415 6.3672
49 1 -5.5470 3.9498 5.0485
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000488928103.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:18
Heat of formation + Delta-G solvation = -57.429149 kcal
Electronic energy + Delta-G solvation = -26690.955446 eV
Core-core repulsion = 23194.689985 eV
Total energy + Delta-G solvation = -3496.265462 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.64445 -40.40897 -37.43258 -36.69536 -34.61052 -34.24623 -32.94626 -31.95017
-30.43909 -29.07849 -28.18155 -27.26467 -25.41697 -24.64483 -22.81540 -22.12711
-21.38183 -21.05863 -20.17430 -18.84777 -17.50313 -17.24878 -16.93720 -16.58781
-16.28194 -16.02406 -15.73909 -15.57086 -14.77310 -14.59209 -14.58112 -14.30980
-14.26322 -13.80430 -13.55142 -13.44903 -13.38389 -13.26808 -13.15908 -12.93338
-12.85164 -12.74925 -12.69777 -12.57913 -12.20587 -12.13939 -12.04830 -11.81328
-11.61088 -11.56180 -11.44723 -11.38001 -11.01842 -10.60545 -10.44312 -9.55557
-9.41288 -9.38310 -8.15715 -6.32705 0.49816 0.51680 1.42959 1.44369
1.55919 1.96227 2.37057 2.70689 2.88561 3.13638 3.48117 3.57734
3.91606 4.01545 4.11029 4.15051 4.19797 4.28151 4.42176 4.48567
4.51225 4.53744 4.60022 4.63617 4.63970 4.78229 4.79931 4.84247
4.86315 4.89437 5.00570 5.03863 5.09650 5.14157 5.18479 5.22170
5.26674 5.29306 5.42223 5.47085 5.48004 5.58453 5.66078 5.67948
5.70459 5.82597 5.85179 5.96887 6.18919 6.19897 6.76804 7.07737
7.35206 7.67856 8.89627
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.024005 B = 0.002918 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.134437 B = 9593.183313 C =10437.565453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.121 4.121
3 C 0.279 3.721
4 H -0.004 1.004
5 C -0.547 4.547
6 H 0.070 0.930
7 C 0.014 3.986
8 N -0.915 5.915
9 Si 0.968 3.032
10 H -0.261 1.261
11 H -0.279 1.279
12 H -0.285 1.285
13 N -0.710 5.710
14 C 0.498 3.502
15 O -0.582 6.582
16 C -0.121 4.121
17 C -0.026 4.026
18 H 0.070 0.930
19 C -0.106 4.106
20 C -0.048 4.048
21 H 0.088 0.912
22 C -0.136 4.136
23 C -0.100 4.100
24 C -0.098 4.098
25 C -0.125 4.125
26 C -0.121 4.121
27 C -0.128 4.128
28 C -0.083 4.083
29 C -0.114 4.114
30 H 0.048 0.952
31 H 0.024 0.976
32 H 0.042 0.958
33 H 0.069 0.931
34 H 0.039 0.961
35 H 0.264 0.736
36 H 0.402 0.598
37 H 0.106 0.894
38 H 0.106 0.894
39 H 0.065 0.935
40 H 0.068 0.932
41 H 0.041 0.959
42 H 0.063 0.937
43 H 0.069 0.931
44 H 0.127 0.873
45 H 0.144 0.856
46 H 0.144 0.856
47 H 0.076 0.924
48 H 0.078 0.922
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.430 8.537 18.742 24.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.160 4.160
3 C 0.176 3.824
4 H 0.014 0.986
5 C -0.585 4.585
6 H 0.088 0.912
7 C -0.186 4.186
8 N -0.554 5.554
9 Si 0.793 3.207
10 H -0.185 1.185
11 H -0.205 1.205
12 H -0.211 1.211
13 N -0.359 5.359
14 C 0.285 3.715
15 O -0.463 6.463
16 C -0.161 4.161
17 C -0.045 4.045
18 H 0.089 0.911
19 C -0.143 4.143
20 C -0.066 4.066
21 H 0.106 0.894
22 C -0.193 4.193
23 C -0.101 4.101
24 C -0.098 4.098
25 C -0.142 4.142
26 C -0.138 4.138
27 C -0.146 4.146
28 C -0.083 4.083
29 C -0.171 4.171
30 H 0.067 0.933
31 H 0.043 0.957
32 H 0.061 0.939
33 H 0.087 0.913
34 H 0.057 0.943
35 H 0.073 0.927
36 H 0.236 0.764
37 H 0.125 0.875
38 H 0.124 0.876
39 H 0.083 0.917
40 H 0.086 0.914
41 H 0.060 0.940
42 H 0.082 0.918
43 H 0.088 0.912
44 H 0.144 0.856
45 H 0.162 0.838
46 H 0.162 0.838
47 H 0.094 0.906
48 H 0.097 0.903
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -13.955 8.413 17.897 24.204
hybrid contribution 1.454 -0.130 -0.584 1.573
sum -12.500 8.284 17.313 22.905
Atomic orbital electron populations
1.21666 0.96810 0.98980 1.00440 1.21770 0.93915 0.99239 1.01040
1.18308 0.93400 0.89118 0.81618 0.98561 1.21637 0.91675 1.38637
1.06539 0.91200 1.25766 1.03203 0.94476 0.95107 1.70057 1.36923
1.38512 1.09887 0.85354 0.79334 0.77806 0.78177 1.18465 1.20473
1.21071 1.46307 1.15867 1.56335 1.17417 1.21147 0.81548 0.78447
0.90328 1.90643 1.52231 1.60942 1.42464 1.21723 0.97470 1.02065
0.94826 1.20283 0.93330 0.95626 0.95221 0.91134 1.22354 0.95202
0.96483 1.00292 1.20590 0.95637 0.95363 0.94999 0.89391 1.21732
0.97946 1.00963 0.98659 1.20532 0.95299 0.98382 0.95838 1.20589
0.95888 0.96981 0.96301 1.20841 1.00577 0.96331 0.96500 1.21304
0.96081 1.00208 0.96244 1.21243 0.95385 0.97338 1.00643 1.19744
0.97764 0.96384 0.94364 1.20838 0.92448 1.02195 1.01581 0.93261
0.95673 0.93880 0.91290 0.94271 0.92677 0.76403 0.87543 0.87589
0.91652 0.91370 0.93959 0.91828 0.91218 0.85553 0.83815 0.83802
0.90580 0.90302 0.91376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.46 8.52 71.98 0.61 -4.85 16
2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16
3 C 0.28 14.30 2.24 44.24 0.10 14.40 16
4 H 0.00 -0.21 7.58 -2.38 -0.02 -0.23 16
5 C -0.55 -29.01 8.73 25.60 0.22 -28.78 16
6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16
7 C 0.01 0.78 5.29 84.66 0.45 1.23 16
8 N -0.92 -52.69 11.29 21.45 0.24 -52.45 16
9 Si 0.97 42.29 29.54 68.60 2.03 44.32 16
10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16
12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
13 N -0.71 -28.91 5.02 -446.10 -2.24 -31.15 16
14 C 0.50 18.97 6.15 87.66 0.54 19.51 16
15 O -0.58 -26.58 12.28 -3.03 -0.04 -26.62 16
16 C -0.12 -3.32 5.03 29.85 0.15 -3.17 16
17 C -0.03 -0.72 2.47 -10.87 -0.03 -0.74 16
18 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16
19 C -0.11 -2.84 5.38 31.51 0.17 -2.67 16
20 C -0.05 -1.04 2.83 -10.87 -0.03 -1.07 16
21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
22 C -0.14 -2.79 9.11 71.98 0.66 -2.13 16
23 C -0.10 -2.25 5.32 -19.59 -0.10 -2.35 16
24 C -0.10 -2.36 5.60 -19.60 -0.11 -2.47 16
25 C -0.12 -2.63 9.68 22.30 0.22 -2.41 16
26 C -0.12 -2.12 10.05 22.24 0.22 -1.90 16
27 C -0.13 -2.16 9.69 22.24 0.22 -1.94 16
28 C -0.08 -1.55 5.88 -19.83 -0.12 -1.67 16
29 C -0.11 -1.52 9.87 71.24 0.70 -0.82 16
30 H 0.05 2.10 5.65 -2.39 -0.01 2.08 16
31 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16
32 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16
33 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16
34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16
36 H 0.40 13.92 8.54 -92.70 -0.79 13.13 16
37 H 0.11 2.52 7.58 -2.39 -0.02 2.51 16
38 H 0.11 2.51 7.97 -2.39 -0.02 2.49 16
39 H 0.06 2.03 7.60 -2.39 -0.02 2.01 16
40 H 0.07 1.80 7.80 -2.38 -0.02 1.78 16
41 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16
42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
43 H 0.07 1.18 6.92 -2.39 -0.02 1.16 16
44 H 0.13 2.37 7.67 -2.91 -0.02 2.35 16
45 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16
46 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16
47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
48 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16
49 H 0.07 0.89 6.42 -2.39 -0.02 0.88 16
Total: -1.00 -65.79 381.17 4.17 -61.62
By element:
Atomic # 1 Polarization: 31.77 SS G_CDS: 0.14 Total: 31.91 kcal
Atomic # 6 Polarization: -31.67 SS G_CDS: 4.04 Total: -27.63 kcal
Atomic # 7 Polarization: -81.61 SS G_CDS: -2.00 Total: -83.60 kcal
Atomic # 8 Polarization: -26.58 SS G_CDS: -0.04 Total: -26.62 kcal
Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal
Total: -65.79 4.17 -61.62 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000488928103.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.191 kcal
(2) G-P(sol) polarization free energy of solvation -65.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.429 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds