Wall clock time and date at job start Tue Mar 31 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 H 1.09006 * 109.47064 * 305.00257 * 3 2 1 5 5 C 1.50697 * 109.47308 * 184.99865 * 3 2 1 6 6 H 1.08001 * 120.00626 * 240.00111 * 5 3 2 7 7 C 1.37881 * 119.99651 * 60.00278 * 5 3 2 8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99692 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47397 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47106 * 119.99938 * 9 7 5 12 12 H 1.48504 * 109.46852 * 239.99356 * 9 7 5 13 13 N 1.46498 * 109.47372 * 64.99789 * 3 2 1 14 14 C 1.34774 * 120.00208 * 275.00265 * 13 3 2 15 15 O 1.21282 * 120.00121 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00034 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47072 * 185.64532 * 16 14 13 18 18 H 1.09002 * 110.27236 * 307.75553 * 17 16 14 19 19 C 1.54347 * 110.30276 * 69.93646 * 17 16 14 20 20 C 1.54347 * 102.40258 * 145.27517 * 19 17 16 21 21 H 1.08998 * 110.30420 * 214.71993 * 20 19 17 22 22 C 1.52994 * 110.38599 * 92.60983 * 20 19 17 23 23 C 1.51374 * 105.16442 * 333.64255 * 20 19 17 24 24 C 1.38257 * 109.75601 * 17.20139 * 23 20 19 25 25 C 1.38451 * 119.84424 * 179.97438 * 24 23 20 26 26 C 1.38141 * 120.22040 * 0.02562 * 25 24 23 27 27 C 1.38214 * 119.93469 * 359.97438 * 26 25 24 28 28 C 1.38147 * 119.93242 * 359.97438 * 27 26 25 29 29 C 1.50704 * 119.89476 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.46965 * 300.00216 * 1 2 3 31 31 H 1.09003 * 109.47101 * 59.99867 * 1 2 3 32 32 H 1.08995 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46965 * 239.99784 * 2 1 3 34 34 H 1.08993 * 109.47082 * 120.00224 * 2 1 3 35 35 H 0.97002 * 120.00453 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99938 * 94.99768 * 13 3 2 37 37 H 1.09002 * 109.47098 * 65.64785 * 16 14 13 38 38 H 1.08996 * 109.47290 * 305.64629 * 16 14 13 39 39 H 1.08999 * 110.82200 * 263.50160 * 19 17 16 40 40 H 1.09005 * 110.82408 * 27.04354 * 19 17 16 41 41 H 1.09009 * 109.47261 * 302.75310 * 22 20 19 42 42 H 1.08999 * 109.47713 * 62.75399 * 22 20 19 43 43 H 1.08998 * 109.47280 * 182.75351 * 22 20 19 44 44 H 1.08003 * 119.89133 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.03796 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.03515 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.47130 * 270.02731 * 29 28 27 48 48 H 1.09000 * 109.46838 * 30.02575 * 29 28 27 49 49 H 1.08999 * 109.47043 * 150.02481 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6092 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3392 2.6327 0.4341 16 6 0.0363 3.3378 2.6548 17 6 -1.4290 3.7698 2.5719 18 1 -1.5993 4.3564 1.6691 19 6 -2.3537 2.5341 2.5925 20 6 -3.5792 3.0502 3.3762 21 1 -4.0032 2.2512 3.9843 22 6 -4.6338 3.6006 2.4141 23 6 -3.0463 4.1571 4.2606 24 6 -1.8107 4.5707 3.7983 25 6 -1.1314 5.5812 4.4573 26 6 -1.6839 6.1764 5.5748 27 6 -2.9191 5.7629 6.0370 28 6 -3.5989 4.7555 5.3802 29 6 -4.9454 4.3049 5.8852 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0612 -2.9499 36 1 2.2720 2.1231 1.9978 37 1 0.6647 4.2136 2.8167 38 1 0.1634 2.6412 3.4835 39 1 -2.6352 2.2439 1.5803 40 1 -1.8798 1.7043 3.1170 41 1 -4.1934 4.3904 1.8053 42 1 -4.9893 2.7987 1.7670 43 1 -5.4701 4.0050 2.9843 44 1 -0.1663 5.9052 4.0966 45 1 -1.1512 6.9641 6.0869 46 1 -3.3527 6.2274 6.9103 47 1 -4.8118 3.4975 6.6052 48 1 -5.4512 5.1415 6.3672 49 1 -5.5470 3.9498 5.0485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488928103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:18 Heat of formation + Delta-G solvation = -57.429149 kcal Electronic energy + Delta-G solvation = -26690.955446 eV Core-core repulsion = 23194.689985 eV Total energy + Delta-G solvation = -3496.265462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64445 -40.40897 -37.43258 -36.69536 -34.61052 -34.24623 -32.94626 -31.95017 -30.43909 -29.07849 -28.18155 -27.26467 -25.41697 -24.64483 -22.81540 -22.12711 -21.38183 -21.05863 -20.17430 -18.84777 -17.50313 -17.24878 -16.93720 -16.58781 -16.28194 -16.02406 -15.73909 -15.57086 -14.77310 -14.59209 -14.58112 -14.30980 -14.26322 -13.80430 -13.55142 -13.44903 -13.38389 -13.26808 -13.15908 -12.93338 -12.85164 -12.74925 -12.69777 -12.57913 -12.20587 -12.13939 -12.04830 -11.81328 -11.61088 -11.56180 -11.44723 -11.38001 -11.01842 -10.60545 -10.44312 -9.55557 -9.41288 -9.38310 -8.15715 -6.32705 0.49816 0.51680 1.42959 1.44369 1.55919 1.96227 2.37057 2.70689 2.88561 3.13638 3.48117 3.57734 3.91606 4.01545 4.11029 4.15051 4.19797 4.28151 4.42176 4.48567 4.51225 4.53744 4.60022 4.63617 4.63970 4.78229 4.79931 4.84247 4.86315 4.89437 5.00570 5.03863 5.09650 5.14157 5.18479 5.22170 5.26674 5.29306 5.42223 5.47085 5.48004 5.58453 5.66078 5.67948 5.70459 5.82597 5.85179 5.96887 6.18919 6.19897 6.76804 7.07737 7.35206 7.67856 8.89627 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002918 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.134437 B = 9593.183313 C =10437.565453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.710 5.710 14 C 0.498 3.502 15 O -0.582 6.582 16 C -0.121 4.121 17 C -0.026 4.026 18 H 0.070 0.930 19 C -0.106 4.106 20 C -0.048 4.048 21 H 0.088 0.912 22 C -0.136 4.136 23 C -0.100 4.100 24 C -0.098 4.098 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.083 4.083 29 C -0.114 4.114 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.402 0.598 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.127 0.873 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 8.537 18.742 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.161 4.161 17 C -0.045 4.045 18 H 0.089 0.911 19 C -0.143 4.143 20 C -0.066 4.066 21 H 0.106 0.894 22 C -0.193 4.193 23 C -0.101 4.101 24 C -0.098 4.098 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.083 4.083 29 C -0.171 4.171 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.236 0.764 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.144 0.856 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.955 8.413 17.897 24.204 hybrid contribution 1.454 -0.130 -0.584 1.573 sum -12.500 8.284 17.313 22.905 Atomic orbital electron populations 1.21666 0.96810 0.98980 1.00440 1.21770 0.93915 0.99239 1.01040 1.18308 0.93400 0.89118 0.81618 0.98561 1.21637 0.91675 1.38637 1.06539 0.91200 1.25766 1.03203 0.94476 0.95107 1.70057 1.36923 1.38512 1.09887 0.85354 0.79334 0.77806 0.78177 1.18465 1.20473 1.21071 1.46307 1.15867 1.56335 1.17417 1.21147 0.81548 0.78447 0.90328 1.90643 1.52231 1.60942 1.42464 1.21723 0.97470 1.02065 0.94826 1.20283 0.93330 0.95626 0.95221 0.91134 1.22354 0.95202 0.96483 1.00292 1.20590 0.95637 0.95363 0.94999 0.89391 1.21732 0.97946 1.00963 0.98659 1.20532 0.95299 0.98382 0.95838 1.20589 0.95888 0.96981 0.96301 1.20841 1.00577 0.96331 0.96500 1.21304 0.96081 1.00208 0.96244 1.21243 0.95385 0.97338 1.00643 1.19744 0.97764 0.96384 0.94364 1.20838 0.92448 1.02195 1.01581 0.93261 0.95673 0.93880 0.91290 0.94271 0.92677 0.76403 0.87543 0.87589 0.91652 0.91370 0.93959 0.91828 0.91218 0.85553 0.83815 0.83802 0.90580 0.90302 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.52 71.98 0.61 -4.85 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.30 2.24 44.24 0.10 14.40 16 4 H 0.00 -0.21 7.58 -2.38 -0.02 -0.23 16 5 C -0.55 -29.01 8.73 25.60 0.22 -28.78 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.69 11.29 21.45 0.24 -52.45 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.71 -28.91 5.02 -446.10 -2.24 -31.15 16 14 C 0.50 18.97 6.15 87.66 0.54 19.51 16 15 O -0.58 -26.58 12.28 -3.03 -0.04 -26.62 16 16 C -0.12 -3.32 5.03 29.85 0.15 -3.17 16 17 C -0.03 -0.72 2.47 -10.87 -0.03 -0.74 16 18 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16 19 C -0.11 -2.84 5.38 31.51 0.17 -2.67 16 20 C -0.05 -1.04 2.83 -10.87 -0.03 -1.07 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 C -0.14 -2.79 9.11 71.98 0.66 -2.13 16 23 C -0.10 -2.25 5.32 -19.59 -0.10 -2.35 16 24 C -0.10 -2.36 5.60 -19.60 -0.11 -2.47 16 25 C -0.12 -2.63 9.68 22.30 0.22 -2.41 16 26 C -0.12 -2.12 10.05 22.24 0.22 -1.90 16 27 C -0.13 -2.16 9.69 22.24 0.22 -1.94 16 28 C -0.08 -1.55 5.88 -19.83 -0.12 -1.67 16 29 C -0.11 -1.52 9.87 71.24 0.70 -0.82 16 30 H 0.05 2.10 5.65 -2.39 -0.01 2.08 16 31 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.40 13.92 8.54 -92.70 -0.79 13.13 16 37 H 0.11 2.52 7.58 -2.39 -0.02 2.51 16 38 H 0.11 2.51 7.97 -2.39 -0.02 2.49 16 39 H 0.06 2.03 7.60 -2.39 -0.02 2.01 16 40 H 0.07 1.80 7.80 -2.38 -0.02 1.78 16 41 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.18 6.92 -2.39 -0.02 1.16 16 44 H 0.13 2.37 7.67 -2.91 -0.02 2.35 16 45 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 49 H 0.07 0.89 6.42 -2.39 -0.02 0.88 16 Total: -1.00 -65.79 381.17 4.17 -61.62 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.14 Total: 31.91 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.04 Total: -27.63 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.00 Total: -83.60 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.04 Total: -26.62 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -65.79 4.17 -61.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488928103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.191 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds