Wall clock time and date at job start Tue Mar 31 2020 12:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47193 * 2 1 4 4 C 1.52996 * 109.47202 * 239.99871 * 2 1 3 5 5 C 1.53002 * 109.47205 * 299.99516 * 4 2 1 6 6 C 1.52995 * 109.47079 * 300.00207 * 5 4 2 7 7 C 1.52996 * 109.47272 * 59.99834 * 6 5 4 8 8 C 1.52994 * 109.47116 * 299.99915 * 7 6 5 9 9 H 1.09002 * 109.47319 * 300.00181 * 8 7 6 10 10 C 1.53003 * 109.47104 * 180.02562 * 8 7 6 11 11 C 1.52994 * 109.47193 * 65.00011 * 10 8 7 12 12 N 1.46504 * 109.46937 * 179.97438 * 11 10 8 13 13 C 1.34774 * 119.99649 * 179.97438 * 12 11 10 14 14 O 1.21545 * 120.00702 * 0.02562 * 13 12 11 15 15 C 1.47890 * 119.99649 * 179.97438 * 13 12 11 16 16 C 1.39920 * 120.02605 * 359.73311 * 15 13 12 17 17 C 1.38332 * 120.35575 * 179.71559 * 16 15 13 18 18 C 1.37746 * 120.41088 * 0.55529 * 17 16 15 19 19 C 1.40742 * 120.04690 * 359.72096 * 18 17 16 20 20 C 1.41435 * 120.18466 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99786 * 334.96991 * 20 19 18 22 22 C 1.39938 * 119.99953 * 154.96208 * 20 19 18 23 23 N 1.30822 * 120.00172 * 342.54886 * 22 20 19 24 24 Si 1.86803 * 119.99673 * 162.54618 * 22 20 19 25 25 H 1.48503 * 109.46931 * 90.00512 * 24 22 20 26 26 H 1.48504 * 109.47086 * 210.00171 * 24 22 20 27 27 H 1.48499 * 109.47212 * 330.00579 * 24 22 20 28 28 C 1.38994 * 120.02557 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47032 * 299.99663 * 1 2 3 30 30 H 1.08994 * 109.47161 * 60.00477 * 1 2 3 31 31 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47346 * 59.99765 * 4 2 1 33 33 H 1.09004 * 109.47426 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.46658 * 60.00406 * 5 4 2 35 35 H 1.09001 * 109.46909 * 179.97438 * 5 4 2 36 36 H 1.09005 * 109.46584 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47345 * 299.99385 * 6 5 4 38 38 H 1.09000 * 109.46961 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47174 * 60.00185 * 7 6 5 40 40 H 1.08997 * 109.47115 * 304.99600 * 10 8 7 41 41 H 1.09003 * 109.46871 * 184.99668 * 10 8 7 42 42 H 1.08997 * 109.47426 * 59.99779 * 11 10 8 43 43 H 1.09003 * 109.46932 * 299.99620 * 11 10 8 44 44 H 0.96999 * 120.00339 * 359.97438 * 12 11 10 45 45 H 1.07996 * 119.81904 * 359.97284 * 16 15 13 46 46 H 1.07999 * 119.79300 * 180.25369 * 17 16 15 47 47 H 1.08006 * 119.97548 * 179.74447 * 18 17 16 48 48 H 0.97007 * 119.99956 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.20135 * 0.03148 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0401 -2.8849 0.0001 7 6 1.5301 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7211 1.2492 10 6 1.5305 -0.0001 2.4988 11 6 2.1411 -0.6452 3.7445 12 7 1.6537 0.0457 4.9409 13 6 2.0605 -0.3534 6.1622 14 8 2.8321 -1.2862 6.2712 15 6 1.5689 0.3444 7.3699 16 6 0.6859 1.4225 7.2449 17 6 0.2172 2.0764 8.3703 18 6 0.6230 1.6813 9.6259 19 6 1.5152 0.6026 9.7713 20 6 1.9333 0.1942 11.0592 21 1 1.9230 0.8977 11.8786 22 6 2.3603 -1.1214 11.2718 23 7 2.0626 -2.0540 10.4040 24 14 3.3553 -1.5459 12.7947 25 1 2.4356 -1.9298 13.8957 26 1 4.2649 -2.6799 12.4915 27 1 4.1562 -0.3655 13.2076 28 6 1.9876 -0.0671 8.6298 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.4400 -2.1638 -1.2492 35 1 1.8931 -2.6775 -2.1393 36 1 1.6764 -3.9125 0.0003 37 1 3.1301 -2.8850 0.0001 38 1 1.8931 -2.6777 2.1393 39 1 0.4401 -2.1638 1.2494 40 1 0.4442 -0.0770 2.5451 41 1 1.8189 1.0502 2.4551 42 1 3.2274 -0.5683 3.6982 43 1 1.8528 -1.6955 3.7882 44 1 1.0382 0.7904 4.8541 45 1 0.3653 1.7432 6.2648 46 1 -0.4673 2.9049 8.2634 47 1 0.2558 2.1995 10.4996 48 1 2.3589 -2.9659 10.5511 49 1 2.6726 -0.8960 8.7308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000510568463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:56 Heat of formation + Delta-G solvation = -75.426950 kcal Electronic energy + Delta-G solvation = -25731.340145 eV Core-core repulsion = 22234.294240 eV Total energy + Delta-G solvation = -3497.045905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00534 -40.31073 -38.81911 -36.38364 -35.59068 -33.69576 -32.75636 -31.91448 -31.27627 -29.32177 -27.45634 -27.08083 -25.11224 -23.73930 -22.93206 -22.72073 -21.88027 -21.07675 -19.50567 -19.23631 -17.94623 -17.26969 -16.84634 -16.59234 -16.45028 -16.34870 -15.69832 -15.35572 -15.13051 -15.03620 -14.91812 -14.39286 -14.38360 -14.25737 -13.82831 -13.57690 -13.48740 -13.08773 -12.96387 -12.78392 -12.66785 -12.55727 -12.52827 -12.38705 -12.20496 -12.06832 -11.92883 -11.89093 -11.52082 -11.49465 -11.07230 -11.06523 -10.94587 -10.74273 -10.67283 -10.11679 -9.46648 -9.38561 -8.66900 -6.38616 0.37872 1.00563 1.35620 1.45904 1.52090 2.09698 2.18992 2.27383 2.78708 3.68803 3.69817 3.75390 3.83485 4.01671 4.09385 4.18954 4.38170 4.40504 4.42906 4.49354 4.51214 4.52757 4.59496 4.63157 4.71550 4.80039 4.84861 4.89839 4.99413 5.04965 5.08451 5.12090 5.14136 5.18732 5.19882 5.25869 5.30232 5.31105 5.37270 5.45129 5.46175 5.51198 5.53840 5.56845 5.72593 5.86634 5.92383 6.05062 6.28527 6.51658 6.69720 6.87489 6.94458 7.31906 8.29995 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.002421 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.630292 B =11563.061620 C =12491.306873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.074 4.074 9 H 0.066 0.934 10 C -0.115 4.115 11 C 0.119 3.881 12 N -0.712 5.712 13 C 0.557 3.443 14 O -0.592 6.592 15 C -0.139 4.139 16 C -0.197 4.197 17 C -0.096 4.096 18 C -0.217 4.217 19 C 0.066 3.934 20 C -0.497 4.497 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.826 5.826 24 Si 0.983 3.017 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.254 1.254 28 C -0.133 4.133 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.413 0.587 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.286 0.714 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 3.660 -21.913 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.093 4.093 9 H 0.085 0.915 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.365 5.365 13 C 0.347 3.653 14 O -0.474 6.474 15 C -0.143 4.143 16 C -0.216 4.216 17 C -0.114 4.114 18 C -0.236 4.236 19 C 0.064 3.936 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.187 4.187 23 N -0.452 5.452 24 Si 0.803 3.197 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.251 0.749 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.097 0.903 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.658 2.749 -21.931 22.262 hybrid contribution 0.358 -0.445 0.967 1.123 sum -2.300 2.305 -20.963 21.215 Atomic orbital electron populations 1.21992 0.94931 1.02128 1.01941 1.21074 0.96283 0.99031 0.93621 0.90784 1.21557 1.00425 0.95579 0.97522 1.21560 1.01098 0.95676 0.97289 1.21520 1.00535 0.98905 0.94724 1.21700 1.01212 0.95316 0.97698 1.21049 1.00040 0.94635 0.93567 0.91527 1.21839 1.01493 1.00338 0.91561 1.21485 0.98515 0.96480 0.83983 1.45779 1.49312 1.36803 1.04647 1.18789 0.79625 0.82321 0.84589 1.90666 1.37772 1.31316 1.87678 1.19799 1.02735 0.99510 0.92223 1.20866 1.03306 0.98472 0.98975 1.20940 0.99245 0.99353 0.91825 1.21418 1.02267 1.02445 0.97513 1.17963 0.90349 0.91949 0.93382 1.19855 1.40400 0.96587 0.95834 0.89734 1.26876 0.94750 0.95689 1.01361 1.69895 1.35728 1.02819 1.36774 0.85199 0.78506 0.78728 0.77284 1.18073 1.19792 1.17804 1.21447 1.01304 1.01236 0.91324 0.92398 0.92297 0.92290 0.91211 0.92292 0.91500 0.91755 0.92142 0.92480 0.93358 0.91309 0.89980 0.89933 0.93111 0.92877 0.74876 0.84428 0.84203 0.87280 0.90350 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.15 71.98 0.59 -1.25 16 2 C -0.08 -1.05 2.72 -10.80 -0.03 -1.08 16 3 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.11 -1.36 5.45 30.59 0.17 -1.19 16 5 C -0.12 -1.49 5.65 30.59 0.17 -1.31 16 6 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 7 C -0.12 -2.11 4.68 30.59 0.14 -1.97 16 8 C -0.07 -1.18 1.96 -10.79 -0.02 -1.21 16 9 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 10 C -0.11 -2.02 4.29 30.59 0.13 -1.89 16 11 C 0.12 3.21 5.43 86.38 0.47 3.68 16 12 N -0.71 -22.78 5.51 -465.94 -2.57 -25.34 16 13 C 0.56 25.10 7.77 86.80 0.67 25.78 16 14 O -0.59 -31.82 16.33 -3.86 -0.06 -31.88 16 15 C -0.14 -6.70 5.87 -20.13 -0.12 -6.82 16 16 C -0.20 -7.72 9.55 22.70 0.22 -7.50 16 17 C -0.10 -3.78 10.01 22.18 0.22 -3.56 16 18 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 19 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 20 C -0.50 -27.44 9.05 23.47 0.21 -27.22 16 21 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 22 C 0.03 1.48 5.14 85.26 0.44 1.92 16 23 N -0.83 -46.95 10.97 21.82 0.24 -46.71 16 24 Si 0.98 40.18 29.59 68.60 2.03 42.21 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 28 C -0.13 -7.50 8.23 23.01 0.19 -7.31 16 29 H 0.06 0.70 6.55 -2.39 -0.02 0.68 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.75 4.81 -2.39 -0.01 0.74 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.81 6.43 -2.38 -0.02 0.80 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 1.01 6.56 -2.39 -0.02 1.00 16 39 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 40 H 0.08 1.32 6.71 -2.39 -0.02 1.31 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.59 6.56 -2.39 -0.02 1.58 16 44 H 0.41 10.45 6.49 -92.71 -0.60 9.85 16 45 H 0.14 4.02 6.38 -2.91 -0.02 4.00 16 46 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 47 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 48 H 0.29 14.98 8.30 -92.70 -0.77 14.21 16 49 H 0.10 6.13 5.76 -2.91 -0.02 6.12 16 Total: -1.00 -69.24 375.38 3.73 -65.51 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.35 Total: 35.24 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.74 Total: -39.03 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.33 Total: -72.06 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.06 Total: -31.88 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -69.24 3.73 -65.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510568463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.914 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds