Wall clock time and date at job start Tue Mar 31 2020 12:28:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09003 * 109.46876 * 2 1
4 4 C 1.52995 * 109.46816 * 119.99560 * 2 1 3
5 5 C 1.53004 * 109.47602 * 60.00318 * 4 2 1
6 6 C 1.53008 * 109.46661 * 59.99389 * 5 4 2
7 7 C 1.52999 * 109.47241 * 300.00234 * 6 5 4
8 8 C 1.52999 * 109.47149 * 239.99666 * 2 1 3
9 9 H 1.09000 * 109.47112 * 180.02562 * 8 2 1
10 10 C 1.53001 * 109.47335 * 59.99911 * 8 2 1
11 11 C 1.52998 * 109.47357 * 174.99687 * 10 8 2
12 12 N 1.46501 * 109.46890 * 180.02562 * 11 10 8
13 13 C 1.34777 * 119.99568 * 180.02562 * 12 11 10
14 14 O 1.21554 * 120.00104 * 359.97438 * 13 12 11
15 15 C 1.47887 * 120.00033 * 179.97438 * 13 12 11
16 16 C 1.39920 * 120.01970 * 359.72409 * 15 13 12
17 17 C 1.38330 * 120.35090 * 179.78475 * 16 15 13
18 18 C 1.37747 * 120.42002 * 0.47166 * 17 16 15
19 19 C 1.40756 * 120.03565 * 359.78371 * 18 17 16
20 20 C 1.41435 * 120.17944 * 179.97438 * 19 18 17
21 21 H 1.07999 * 119.99906 * 24.47664 * 20 19 18
22 22 C 1.39944 * 120.00023 * 204.48554 * 20 19 18
23 23 N 1.30822 * 119.99874 * 17.87461 * 22 20 19
24 24 Si 1.86799 * 119.99816 * 197.87720 * 22 20 19
25 25 H 1.48502 * 109.47195 * 59.99893 * 24 22 20
26 26 H 1.48502 * 109.46840 * 179.97438 * 24 22 20
27 27 H 1.48497 * 109.47235 * 299.99721 * 24 22 20
28 28 C 1.38994 * 120.02526 * 179.97438 * 15 13 12
29 29 H 1.08996 * 109.47494 * 299.99997 * 1 2 3
30 30 H 1.09004 * 109.47211 * 60.00312 * 1 2 3
31 31 H 1.09003 * 109.46876 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47767 * 300.00035 * 4 2 1
33 33 H 1.09000 * 109.47032 * 179.97438 * 4 2 1
34 34 H 1.08990 * 109.47502 * 179.97438 * 5 4 2
35 35 H 1.08995 * 109.46824 * 300.00282 * 5 4 2
36 36 H 1.08995 * 109.46772 * 60.00862 * 6 5 4
37 37 H 1.09001 * 109.46621 * 180.02562 * 6 5 4
38 38 H 1.09006 * 109.46616 * 180.02562 * 7 6 5
39 39 H 1.09001 * 109.47087 * 300.00138 * 7 6 5
40 40 H 1.08998 * 109.47013 * 295.00027 * 10 8 2
41 41 H 1.09010 * 109.46818 * 54.99852 * 10 8 2
42 42 H 1.08998 * 109.47336 * 300.00142 * 11 10 8
43 43 H 1.08995 * 109.46708 * 60.00036 * 11 10 8
44 44 H 0.96999 * 120.00289 * 359.97438 * 12 11 10
45 45 H 1.07994 * 119.82290 * 359.97438 * 16 15 13
46 46 H 1.08003 * 119.79161 * 180.20942 * 17 16 15
47 47 H 1.07993 * 119.98792 * 179.76480 * 18 17 16
48 48 H 0.96998 * 120.00102 * 180.02562 * 23 22 20
49 49 H 1.07996 * 120.20233 * 0.02562 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7211 1.2493
5 6 1.5300 -2.1637 1.2494
6 6 2.0401 -2.8850 0.0001
7 6 1.5300 -2.1638 -1.2491
8 6 2.0400 -0.7213 -1.2492
9 1 3.1300 -0.7217 -1.2489
10 6 1.5301 -0.0002 -2.4985
11 6 2.1402 -0.6452 -3.7445
12 7 1.6523 0.0458 -4.9407
13 6 2.0586 -0.3533 -6.1622
14 8 2.8302 -1.2862 -6.2714
15 6 1.5657 0.3437 -7.3698
16 6 0.6730 1.4139 -7.2449
17 6 0.2110 2.0736 -8.3696
18 6 0.6165 1.6790 -9.6255
19 6 1.5100 0.6011 -9.7711
20 6 1.9279 0.1930 -11.0592
21 1 1.9079 0.8939 -11.8806
22 6 2.3670 -1.1190 -11.2693
23 7 2.0744 -2.0536 -10.4019
24 14 3.3713 -1.5357 -12.7883
25 1 4.6214 -0.7342 -12.7905
26 1 3.7107 -2.9814 -12.7759
27 1 2.5805 -1.2228 -14.0056
28 6 1.9848 -0.0671 -8.6297
29 1 -0.3634 0.5138 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.6766 -0.2073 2.1393
33 1 3.1300 -0.7216 1.2491
34 1 1.8937 -2.6775 2.1392
35 1 0.4401 -2.1637 1.2493
36 1 3.1300 -2.8850 0.0002
37 1 1.6764 -3.9125 0.0000
38 1 1.8931 -2.6780 -2.1391
39 1 0.4400 -2.1639 -1.2491
40 1 0.4438 -0.0771 -2.5444
41 1 1.8184 1.0502 -2.4549
42 1 3.2265 -0.5683 -3.6986
43 1 1.8518 -1.6954 -3.7881
44 1 1.0362 0.7899 -4.8536
45 1 0.3453 1.7284 -6.2652
46 1 -0.4752 2.9007 -8.2626
47 1 0.2485 2.1966 -10.4989
48 1 2.3791 -2.9629 -10.5474
49 1 2.6702 -0.8955 -8.7310
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000510568465.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:07
Heat of formation + Delta-G solvation = -60.344153 kcal
Electronic energy + Delta-G solvation = -25731.708995 eV
Core-core repulsion = 22235.317129 eV
Total energy + Delta-G solvation = -3496.391866 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.87436 -39.01071 -37.01466 -35.04652 -33.73982 -32.64460 -32.00211 -30.22243
-29.42520 -28.35449 -26.62069 -25.29803 -23.98968 -22.51737 -21.88665 -21.09657
-20.79292 -19.45590 -18.59415 -17.67832 -16.31731 -16.03282 -15.51504 -15.33765
-15.05568 -14.75136 -14.53721 -14.38037 -14.07873 -13.68936 -13.40193 -13.18792
-13.02072 -12.95054 -12.62567 -12.46360 -12.28097 -11.84106 -11.75933 -11.74956
-11.60001 -11.33963 -11.27546 -11.13786 -11.06148 -10.77862 -10.71427 -10.49466
-10.40717 -10.19218 -10.06267 -10.01048 -9.68282 -9.19847 -8.97740 -8.59219
-7.61348 -7.50980 -6.79090 -4.40415 2.23635 2.83291 3.08087 3.09874
3.17614 3.72358 3.89583 3.93408 4.40877 4.44660 4.50587 4.65466
4.84566 4.93063 5.06286 5.12293 5.15059 5.20689 5.29152 5.35362
5.43702 5.48957 5.61587 5.61902 5.62466 5.74211 5.75150 5.78572
5.83305 5.90213 5.94952 6.05464 6.07153 6.10006 6.13206 6.15475
6.27720 6.28971 6.37550 6.73232 6.91753 7.00202 7.03924 7.22547
7.39502 7.71661 7.77761 7.94168 8.12562 8.21240 8.51749 8.81176
8.84776 8.99612 10.15623
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.023265 B = 0.002422 C = 0.002242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1203.230589 B =11558.506220 C =12487.288698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.086 4.086
3 H 0.068 0.932
4 C -0.114 4.114
5 C -0.121 4.121
6 C -0.119 4.119
7 C -0.122 4.122
8 C -0.077 4.077
9 H 0.072 0.928
10 C -0.128 4.128
11 C 0.120 3.880
12 N -0.738 5.738
13 C 0.562 3.438
14 O -0.547 6.547
15 C -0.128 4.128
16 C -0.218 4.218
17 C -0.098 4.098
18 C -0.213 4.213
19 C 0.098 3.902
20 C -0.460 4.460
21 H 0.081 0.919
22 C 0.073 3.927
23 N -0.783 5.783
24 Si 0.911 3.089
25 H -0.263 1.263
26 H -0.277 1.277
27 H -0.265 1.265
28 C -0.093 4.093
29 H 0.050 0.950
30 H 0.057 0.943
31 H 0.061 0.939
32 H 0.059 0.941
33 H 0.060 0.940
34 H 0.057 0.943
35 H 0.064 0.936
36 H 0.060 0.940
37 H 0.059 0.941
38 H 0.067 0.933
39 H 0.066 0.934
40 H 0.071 0.929
41 H 0.068 0.932
42 H 0.060 0.940
43 H 0.064 0.936
44 H 0.398 0.602
45 H 0.089 0.911
46 H 0.093 0.907
47 H 0.095 0.905
48 H 0.285 0.715
49 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.836 1.573 20.010 20.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.104 4.104
3 H 0.087 0.913
4 C -0.152 4.152
5 C -0.159 4.159
6 C -0.157 4.157
7 C -0.159 4.159
8 C -0.096 4.096
9 H 0.090 0.910
10 C -0.165 4.165
11 C -0.004 4.004
12 N -0.392 5.392
13 C 0.353 3.647
14 O -0.426 6.426
15 C -0.131 4.131
16 C -0.239 4.239
17 C -0.116 4.116
18 C -0.233 4.233
19 C 0.096 3.904
20 C -0.489 4.489
21 H 0.099 0.901
22 C -0.146 4.146
23 N -0.407 5.407
24 Si 0.735 3.265
25 H -0.187 1.187
26 H -0.202 1.202
27 H -0.190 1.190
28 C -0.113 4.113
29 H 0.069 0.931
30 H 0.076 0.924
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.075 0.925
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.086 0.914
39 H 0.084 0.916
40 H 0.090 0.910
41 H 0.086 0.914
42 H 0.078 0.922
43 H 0.082 0.918
44 H 0.233 0.767
45 H 0.107 0.893
46 H 0.111 0.889
47 H 0.114 0.886
48 H 0.096 0.904
49 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -1.252 0.612 19.983 20.032
hybrid contribution 0.037 0.114 -0.563 0.576
sum -1.215 0.726 19.420 19.472
Atomic orbital electron populations
1.21998 0.95360 1.02164 1.01522 1.21103 0.96001 0.98972 0.94323
0.91329 1.21556 1.00506 0.95695 0.97393 1.21576 1.00969 0.95626
0.97706 1.21528 1.00770 0.98772 0.94617 1.21717 1.01097 0.95090
0.97983 1.21077 1.00348 0.94808 0.93355 0.90956 1.21896 1.01217
0.99943 0.93473 1.21298 0.98738 0.96747 0.83588 1.45965 1.50429
1.37140 1.05630 1.18851 0.79806 0.82762 0.83303 1.90692 1.35640
1.29311 1.86929 1.19490 1.02287 0.98751 0.92567 1.20335 1.05968
1.00978 0.96572 1.20432 0.99512 0.98596 0.93091 1.21092 1.03220
1.03473 0.95470 1.17605 0.89079 0.90532 0.93200 1.19556 1.37985
0.96004 0.95366 0.90109 1.25970 0.94333 0.96116 0.98195 1.69782
1.33892 1.02505 1.34540 0.86324 0.80814 0.78012 0.81366 1.18718
1.20225 1.18963 1.21645 0.99770 1.00517 0.89397 0.93135 0.92371
0.92016 0.92235 0.92092 0.92457 0.91763 0.92081 0.92182 0.91435
0.91581 0.91032 0.91356 0.92151 0.91750 0.76684 0.89267 0.88928
0.88634 0.90377 0.84845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.15 8.15 37.16 0.30 -0.84 16
2 C -0.09 -0.66 2.72 -90.62 -0.25 -0.91 16
3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
4 C -0.11 -0.82 5.45 -26.73 -0.15 -0.96 16
5 C -0.12 -0.87 5.65 -26.72 -0.15 -1.03 16
6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16
7 C -0.12 -1.10 4.68 -26.73 -0.13 -1.23 16
8 C -0.08 -0.68 1.96 -90.62 -0.18 -0.86 16
9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
10 C -0.13 -1.28 4.29 -26.73 -0.11 -1.39 16
11 C 0.12 1.68 5.43 -4.04 -0.02 1.66 16
12 N -0.74 -12.37 5.51 -61.24 -0.34 -12.71 16
13 C 0.56 12.55 7.77 -12.31 -0.10 12.46 16
14 O -0.55 -14.04 16.33 5.32 0.09 -13.96 16
15 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16
16 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16
17 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16
18 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16
19 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16
20 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16
21 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16
22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16
23 N -0.78 -20.94 10.96 55.55 0.61 -20.34 16
24 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16
25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16
26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16
27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16
28 C -0.09 -2.52 8.24 -38.44 -0.32 -2.84 16
29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
30 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16
31 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16
32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
35 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16
36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16
39 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16
40 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16
41 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
43 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16
44 H 0.40 5.75 6.49 -40.82 -0.26 5.48 16
45 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16
46 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16
47 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16
48 H 0.29 7.03 8.30 -40.82 -0.34 6.69 16
49 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16
LS Contribution 375.35 15.07 5.66 5.66
Total: -1.00 -29.60 375.35 -10.87 -40.47
By element:
Atomic # 1 Polarization: 17.21 SS G_CDS: -7.81 Total: 9.40 kcal
Atomic # 6 Polarization: -18.38 SS G_CDS: -4.04 Total: -22.42 kcal
Atomic # 7 Polarization: -33.32 SS G_CDS: 0.27 Total: -33.05 kcal
Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.96 kcal
Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -29.60 -10.87 -40.47 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000510568465.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.871 kcal
(2) G-P(sol) polarization free energy of solvation -29.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds