Wall clock time and date at job start Tue Mar 31 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46876 * 2 1 4 4 C 1.52995 * 109.46816 * 119.99560 * 2 1 3 5 5 C 1.53004 * 109.47602 * 60.00318 * 4 2 1 6 6 C 1.53008 * 109.46661 * 59.99389 * 5 4 2 7 7 C 1.52999 * 109.47241 * 300.00234 * 6 5 4 8 8 C 1.52999 * 109.47149 * 239.99666 * 2 1 3 9 9 H 1.09000 * 109.47112 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47335 * 59.99911 * 8 2 1 11 11 C 1.52998 * 109.47357 * 174.99687 * 10 8 2 12 12 N 1.46501 * 109.46890 * 180.02562 * 11 10 8 13 13 C 1.34777 * 119.99568 * 180.02562 * 12 11 10 14 14 O 1.21554 * 120.00104 * 359.97438 * 13 12 11 15 15 C 1.47887 * 120.00033 * 179.97438 * 13 12 11 16 16 C 1.39920 * 120.01970 * 359.72409 * 15 13 12 17 17 C 1.38330 * 120.35090 * 179.78475 * 16 15 13 18 18 C 1.37747 * 120.42002 * 0.47166 * 17 16 15 19 19 C 1.40756 * 120.03565 * 359.78371 * 18 17 16 20 20 C 1.41435 * 120.17944 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99906 * 24.47664 * 20 19 18 22 22 C 1.39944 * 120.00023 * 204.48554 * 20 19 18 23 23 N 1.30822 * 119.99874 * 17.87461 * 22 20 19 24 24 Si 1.86799 * 119.99816 * 197.87720 * 22 20 19 25 25 H 1.48502 * 109.47195 * 59.99893 * 24 22 20 26 26 H 1.48502 * 109.46840 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47235 * 299.99721 * 24 22 20 28 28 C 1.38994 * 120.02526 * 179.97438 * 15 13 12 29 29 H 1.08996 * 109.47494 * 299.99997 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00312 * 1 2 3 31 31 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47767 * 300.00035 * 4 2 1 33 33 H 1.09000 * 109.47032 * 179.97438 * 4 2 1 34 34 H 1.08990 * 109.47502 * 179.97438 * 5 4 2 35 35 H 1.08995 * 109.46824 * 300.00282 * 5 4 2 36 36 H 1.08995 * 109.46772 * 60.00862 * 6 5 4 37 37 H 1.09001 * 109.46621 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.46616 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47087 * 300.00138 * 7 6 5 40 40 H 1.08998 * 109.47013 * 295.00027 * 10 8 2 41 41 H 1.09010 * 109.46818 * 54.99852 * 10 8 2 42 42 H 1.08998 * 109.47336 * 300.00142 * 11 10 8 43 43 H 1.08995 * 109.46708 * 60.00036 * 11 10 8 44 44 H 0.96999 * 120.00289 * 359.97438 * 12 11 10 45 45 H 1.07994 * 119.82290 * 359.97438 * 16 15 13 46 46 H 1.08003 * 119.79161 * 180.20942 * 17 16 15 47 47 H 1.07993 * 119.98792 * 179.76480 * 18 17 16 48 48 H 0.96998 * 120.00102 * 180.02562 * 23 22 20 49 49 H 1.07996 * 120.20233 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7217 -1.2489 10 6 1.5301 -0.0002 -2.4985 11 6 2.1402 -0.6452 -3.7445 12 7 1.6523 0.0458 -4.9407 13 6 2.0586 -0.3533 -6.1622 14 8 2.8302 -1.2862 -6.2714 15 6 1.5657 0.3437 -7.3698 16 6 0.6730 1.4139 -7.2449 17 6 0.2110 2.0736 -8.3696 18 6 0.6165 1.6790 -9.6255 19 6 1.5100 0.6011 -9.7711 20 6 1.9279 0.1930 -11.0592 21 1 1.9079 0.8939 -11.8806 22 6 2.3670 -1.1190 -11.2693 23 7 2.0744 -2.0536 -10.4019 24 14 3.3713 -1.5357 -12.7883 25 1 4.6214 -0.7342 -12.7905 26 1 3.7107 -2.9814 -12.7759 27 1 2.5805 -1.2228 -14.0056 28 6 1.9848 -0.0671 -8.6297 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7216 1.2491 34 1 1.8937 -2.6775 2.1392 35 1 0.4401 -2.1637 1.2493 36 1 3.1300 -2.8850 0.0002 37 1 1.6764 -3.9125 0.0000 38 1 1.8931 -2.6780 -2.1391 39 1 0.4400 -2.1639 -1.2491 40 1 0.4438 -0.0771 -2.5444 41 1 1.8184 1.0502 -2.4549 42 1 3.2265 -0.5683 -3.6986 43 1 1.8518 -1.6954 -3.7881 44 1 1.0362 0.7899 -4.8536 45 1 0.3453 1.7284 -6.2652 46 1 -0.4752 2.9007 -8.2626 47 1 0.2485 2.1966 -10.4989 48 1 2.3791 -2.9629 -10.5474 49 1 2.6702 -0.8955 -8.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000510568465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:07 Heat of formation + Delta-G solvation = -60.344153 kcal Electronic energy + Delta-G solvation = -25731.708995 eV Core-core repulsion = 22235.317129 eV Total energy + Delta-G solvation = -3496.391866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.87436 -39.01071 -37.01466 -35.04652 -33.73982 -32.64460 -32.00211 -30.22243 -29.42520 -28.35449 -26.62069 -25.29803 -23.98968 -22.51737 -21.88665 -21.09657 -20.79292 -19.45590 -18.59415 -17.67832 -16.31731 -16.03282 -15.51504 -15.33765 -15.05568 -14.75136 -14.53721 -14.38037 -14.07873 -13.68936 -13.40193 -13.18792 -13.02072 -12.95054 -12.62567 -12.46360 -12.28097 -11.84106 -11.75933 -11.74956 -11.60001 -11.33963 -11.27546 -11.13786 -11.06148 -10.77862 -10.71427 -10.49466 -10.40717 -10.19218 -10.06267 -10.01048 -9.68282 -9.19847 -8.97740 -8.59219 -7.61348 -7.50980 -6.79090 -4.40415 2.23635 2.83291 3.08087 3.09874 3.17614 3.72358 3.89583 3.93408 4.40877 4.44660 4.50587 4.65466 4.84566 4.93063 5.06286 5.12293 5.15059 5.20689 5.29152 5.35362 5.43702 5.48957 5.61587 5.61902 5.62466 5.74211 5.75150 5.78572 5.83305 5.90213 5.94952 6.05464 6.07153 6.10006 6.13206 6.15475 6.27720 6.28971 6.37550 6.73232 6.91753 7.00202 7.03924 7.22547 7.39502 7.71661 7.77761 7.94168 8.12562 8.21240 8.51749 8.81176 8.84776 8.99612 10.15623 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002422 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.230589 B =11558.506220 C =12487.288698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.077 4.077 9 H 0.072 0.928 10 C -0.128 4.128 11 C 0.120 3.880 12 N -0.738 5.738 13 C 0.562 3.438 14 O -0.547 6.547 15 C -0.128 4.128 16 C -0.218 4.218 17 C -0.098 4.098 18 C -0.213 4.213 19 C 0.098 3.902 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.911 3.089 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.093 4.093 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.285 0.715 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 1.573 20.010 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.096 4.096 9 H 0.090 0.910 10 C -0.165 4.165 11 C -0.004 4.004 12 N -0.392 5.392 13 C 0.353 3.647 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.239 4.239 17 C -0.116 4.116 18 C -0.233 4.233 19 C 0.096 3.904 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.233 0.767 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.096 0.904 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.252 0.612 19.983 20.032 hybrid contribution 0.037 0.114 -0.563 0.576 sum -1.215 0.726 19.420 19.472 Atomic orbital electron populations 1.21998 0.95360 1.02164 1.01522 1.21103 0.96001 0.98972 0.94323 0.91329 1.21556 1.00506 0.95695 0.97393 1.21576 1.00969 0.95626 0.97706 1.21528 1.00770 0.98772 0.94617 1.21717 1.01097 0.95090 0.97983 1.21077 1.00348 0.94808 0.93355 0.90956 1.21896 1.01217 0.99943 0.93473 1.21298 0.98738 0.96747 0.83588 1.45965 1.50429 1.37140 1.05630 1.18851 0.79806 0.82762 0.83303 1.90692 1.35640 1.29311 1.86929 1.19490 1.02287 0.98751 0.92567 1.20335 1.05968 1.00978 0.96572 1.20432 0.99512 0.98596 0.93091 1.21092 1.03220 1.03473 0.95470 1.17605 0.89079 0.90532 0.93200 1.19556 1.37985 0.96004 0.95366 0.90109 1.25970 0.94333 0.96116 0.98195 1.69782 1.33892 1.02505 1.34540 0.86324 0.80814 0.78012 0.81366 1.18718 1.20225 1.18963 1.21645 0.99770 1.00517 0.89397 0.93135 0.92371 0.92016 0.92235 0.92092 0.92457 0.91763 0.92081 0.92182 0.91435 0.91581 0.91032 0.91356 0.92151 0.91750 0.76684 0.89267 0.88928 0.88634 0.90377 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.15 37.16 0.30 -0.84 16 2 C -0.09 -0.66 2.72 -90.62 -0.25 -0.91 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.82 5.45 -26.73 -0.15 -0.96 16 5 C -0.12 -0.87 5.65 -26.72 -0.15 -1.03 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.10 4.68 -26.73 -0.13 -1.23 16 8 C -0.08 -0.68 1.96 -90.62 -0.18 -0.86 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 C -0.13 -1.28 4.29 -26.73 -0.11 -1.39 16 11 C 0.12 1.68 5.43 -4.04 -0.02 1.66 16 12 N -0.74 -12.37 5.51 -61.24 -0.34 -12.71 16 13 C 0.56 12.55 7.77 -12.31 -0.10 12.46 16 14 O -0.55 -14.04 16.33 5.32 0.09 -13.96 16 15 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 16 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16 17 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16 18 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 19 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 20 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 21 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 23 N -0.78 -20.94 10.96 55.55 0.61 -20.34 16 24 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.09 -2.52 8.24 -38.44 -0.32 -2.84 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 31 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 39 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 40 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 41 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 44 H 0.40 5.75 6.49 -40.82 -0.26 5.48 16 45 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 46 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 48 H 0.29 7.03 8.30 -40.82 -0.34 6.69 16 49 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -29.60 375.35 -10.87 -40.47 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.81 Total: 9.40 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -4.04 Total: -22.42 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.27 Total: -33.05 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.60 -10.87 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510568465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.871 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds