Wall clock time and date at job start Tue Mar 31 2020 12:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46876 * 2 1 4 4 C 1.52995 * 109.46816 * 119.99560 * 2 1 3 5 5 C 1.53004 * 109.47602 * 60.00318 * 4 2 1 6 6 C 1.53008 * 109.46661 * 59.99389 * 5 4 2 7 7 C 1.52999 * 109.47241 * 300.00234 * 6 5 4 8 8 C 1.52999 * 109.47149 * 239.99666 * 2 1 3 9 9 H 1.09000 * 109.47112 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47335 * 59.99911 * 8 2 1 11 11 C 1.52998 * 109.47357 * 174.99687 * 10 8 2 12 12 N 1.46501 * 109.46890 * 180.02562 * 11 10 8 13 13 C 1.34777 * 119.99568 * 180.02562 * 12 11 10 14 14 O 1.21554 * 120.00104 * 359.97438 * 13 12 11 15 15 C 1.47887 * 120.00033 * 179.97438 * 13 12 11 16 16 C 1.39920 * 120.01970 * 359.72409 * 15 13 12 17 17 C 1.38330 * 120.35090 * 179.78475 * 16 15 13 18 18 C 1.37747 * 120.42002 * 0.47166 * 17 16 15 19 19 C 1.40756 * 120.03565 * 359.78371 * 18 17 16 20 20 C 1.41435 * 120.17944 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99906 * 24.47664 * 20 19 18 22 22 C 1.39944 * 120.00023 * 204.48554 * 20 19 18 23 23 N 1.30822 * 119.99874 * 17.87461 * 22 20 19 24 24 Si 1.86799 * 119.99816 * 197.87720 * 22 20 19 25 25 H 1.48502 * 109.47195 * 59.99893 * 24 22 20 26 26 H 1.48502 * 109.46840 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47235 * 299.99721 * 24 22 20 28 28 C 1.38994 * 120.02526 * 179.97438 * 15 13 12 29 29 H 1.08996 * 109.47494 * 299.99997 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00312 * 1 2 3 31 31 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47767 * 300.00035 * 4 2 1 33 33 H 1.09000 * 109.47032 * 179.97438 * 4 2 1 34 34 H 1.08990 * 109.47502 * 179.97438 * 5 4 2 35 35 H 1.08995 * 109.46824 * 300.00282 * 5 4 2 36 36 H 1.08995 * 109.46772 * 60.00862 * 6 5 4 37 37 H 1.09001 * 109.46621 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.46616 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47087 * 300.00138 * 7 6 5 40 40 H 1.08998 * 109.47013 * 295.00027 * 10 8 2 41 41 H 1.09010 * 109.46818 * 54.99852 * 10 8 2 42 42 H 1.08998 * 109.47336 * 300.00142 * 11 10 8 43 43 H 1.08995 * 109.46708 * 60.00036 * 11 10 8 44 44 H 0.96999 * 120.00289 * 359.97438 * 12 11 10 45 45 H 1.07994 * 119.82290 * 359.97438 * 16 15 13 46 46 H 1.08003 * 119.79161 * 180.20942 * 17 16 15 47 47 H 1.07993 * 119.98792 * 179.76480 * 18 17 16 48 48 H 0.96998 * 120.00102 * 180.02562 * 23 22 20 49 49 H 1.07996 * 120.20233 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7217 -1.2489 10 6 1.5301 -0.0002 -2.4985 11 6 2.1402 -0.6452 -3.7445 12 7 1.6523 0.0458 -4.9407 13 6 2.0586 -0.3533 -6.1622 14 8 2.8302 -1.2862 -6.2714 15 6 1.5657 0.3437 -7.3698 16 6 0.6730 1.4139 -7.2449 17 6 0.2110 2.0736 -8.3696 18 6 0.6165 1.6790 -9.6255 19 6 1.5100 0.6011 -9.7711 20 6 1.9279 0.1930 -11.0592 21 1 1.9079 0.8939 -11.8806 22 6 2.3670 -1.1190 -11.2693 23 7 2.0744 -2.0536 -10.4019 24 14 3.3713 -1.5357 -12.7883 25 1 4.6214 -0.7342 -12.7905 26 1 3.7107 -2.9814 -12.7759 27 1 2.5805 -1.2228 -14.0056 28 6 1.9848 -0.0671 -8.6297 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7216 1.2491 34 1 1.8937 -2.6775 2.1392 35 1 0.4401 -2.1637 1.2493 36 1 3.1300 -2.8850 0.0002 37 1 1.6764 -3.9125 0.0000 38 1 1.8931 -2.6780 -2.1391 39 1 0.4400 -2.1639 -1.2491 40 1 0.4438 -0.0771 -2.5444 41 1 1.8184 1.0502 -2.4549 42 1 3.2265 -0.5683 -3.6986 43 1 1.8518 -1.6954 -3.7881 44 1 1.0362 0.7899 -4.8536 45 1 0.3453 1.7284 -6.2652 46 1 -0.4752 2.9007 -8.2626 47 1 0.2485 2.1966 -10.4989 48 1 2.3791 -2.9629 -10.5474 49 1 2.6702 -0.8955 -8.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000510568465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:06 Heat of formation + Delta-G solvation = -75.414167 kcal Electronic energy + Delta-G solvation = -25732.362480 eV Core-core repulsion = 22235.317129 eV Total energy + Delta-G solvation = -3497.045351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00385 -40.31026 -38.81770 -36.38252 -35.59388 -33.69552 -32.75562 -31.91509 -31.27455 -29.32114 -27.45651 -27.08103 -25.11201 -23.73896 -22.93166 -22.72035 -21.87989 -21.07585 -19.50510 -19.23653 -17.94503 -17.26902 -16.85071 -16.59291 -16.44887 -16.34835 -15.69983 -15.35271 -15.13210 -15.03540 -14.91721 -14.39022 -14.38095 -14.25729 -13.82793 -13.57728 -13.48240 -13.08695 -12.96027 -12.81039 -12.66554 -12.55728 -12.51670 -12.38676 -12.20455 -12.06799 -11.92392 -11.88820 -11.52240 -11.49557 -11.07196 -11.06575 -10.94525 -10.74275 -10.67175 -10.11659 -9.47036 -9.38692 -8.67081 -6.38593 0.37962 1.01037 1.35492 1.47503 1.50185 2.09850 2.18849 2.27443 2.78483 3.68845 3.69917 3.75412 3.83493 4.01715 4.09423 4.18946 4.38175 4.40527 4.42954 4.49359 4.51206 4.52777 4.59660 4.63158 4.71605 4.80050 4.84876 4.89934 4.99405 5.04920 5.08340 5.12074 5.14137 5.18816 5.19990 5.25868 5.30217 5.31177 5.37283 5.45146 5.46182 5.51172 5.53852 5.56844 5.72570 5.86657 5.92505 6.05151 6.28522 6.51573 6.69765 6.87260 6.94532 7.31935 8.29573 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002422 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.230589 B =11558.506220 C =12487.288698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.074 4.074 9 H 0.066 0.934 10 C -0.115 4.115 11 C 0.119 3.881 12 N -0.712 5.712 13 C 0.557 3.443 14 O -0.592 6.592 15 C -0.139 4.139 16 C -0.197 4.197 17 C -0.096 4.096 18 C -0.217 4.217 19 C 0.066 3.934 20 C -0.498 4.498 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.826 5.826 24 Si 0.983 3.017 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.251 1.251 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.413 0.587 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.286 0.714 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 3.640 21.891 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.093 4.093 9 H 0.085 0.915 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.365 5.365 13 C 0.347 3.653 14 O -0.474 6.474 15 C -0.142 4.142 16 C -0.217 4.217 17 C -0.113 4.113 18 C -0.237 4.237 19 C 0.063 3.937 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.187 4.187 23 N -0.451 5.451 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.175 1.175 28 C -0.154 4.154 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.251 0.749 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.097 0.903 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.657 2.725 21.908 22.236 hybrid contribution 0.370 -0.426 -0.964 1.117 sum -2.286 2.299 20.944 21.193 Atomic orbital electron populations 1.21994 0.94930 1.02128 1.01940 1.21074 0.96284 0.99031 0.93623 0.90786 1.21558 1.00424 0.95580 0.97521 1.21562 1.01097 0.95676 0.97292 1.21523 1.00534 0.98906 0.94726 1.21703 1.01211 0.95315 0.97698 1.21049 1.00038 0.94634 0.93567 0.91525 1.21841 1.01495 1.00336 0.91559 1.21483 0.98511 0.96480 0.83988 1.45779 1.49279 1.36837 1.04646 1.18794 0.79639 0.82308 0.84590 1.90667 1.37787 1.31295 1.87682 1.19798 1.02627 0.99600 0.92224 1.20861 1.03215 0.98616 0.98990 1.20938 0.99280 0.99294 0.91833 1.21415 1.02334 1.02451 0.97499 1.17964 0.90348 0.91959 0.93381 1.19845 1.40196 0.96876 0.95774 0.89704 1.26880 0.94827 0.95620 1.01337 1.69888 1.35564 1.02852 1.36819 0.85237 0.79027 0.77776 0.77628 1.18500 1.19710 1.17489 1.21457 1.01392 1.01243 0.91319 0.92304 0.92393 0.92288 0.91205 0.92293 0.91753 0.91497 0.92480 0.92141 0.93357 0.91309 0.89977 0.89938 0.93112 0.92876 0.74878 0.84441 0.84213 0.87283 0.90323 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.15 71.98 0.59 -1.26 16 2 C -0.08 -1.05 2.72 -10.79 -0.03 -1.08 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.36 5.45 30.59 0.17 -1.19 16 5 C -0.12 -1.49 5.65 30.60 0.17 -1.31 16 6 C -0.12 -1.82 5.92 30.60 0.18 -1.64 16 7 C -0.12 -2.12 4.68 30.59 0.14 -1.97 16 8 C -0.07 -1.19 1.96 -10.79 -0.02 -1.21 16 9 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 10 C -0.11 -2.02 4.29 30.59 0.13 -1.89 16 11 C 0.12 3.21 5.43 86.38 0.47 3.68 16 12 N -0.71 -22.79 5.51 -465.93 -2.57 -25.36 16 13 C 0.56 25.11 7.77 86.80 0.67 25.79 16 14 O -0.59 -31.82 16.33 -3.88 -0.06 -31.89 16 15 C -0.14 -6.70 5.87 -20.13 -0.12 -6.81 16 16 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 17 C -0.10 -3.78 10.01 22.18 0.22 -3.56 16 18 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16 19 C 0.07 3.62 5.57 -21.32 -0.12 3.51 16 20 C -0.50 -27.43 9.05 23.47 0.21 -27.22 16 21 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 22 C 0.03 1.50 5.14 85.26 0.44 1.94 16 23 N -0.83 -46.90 10.96 21.83 0.24 -46.66 16 24 Si 0.98 40.16 29.60 68.60 2.03 42.19 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 28 C -0.13 -7.56 8.24 23.01 0.19 -7.37 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.70 6.54 -2.38 -0.02 0.69 16 31 H 0.06 0.75 4.81 -2.39 -0.01 0.74 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.82 6.43 -2.39 -0.02 0.80 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.01 6.57 -2.38 -0.02 1.00 16 39 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 40 H 0.08 1.32 6.71 -2.39 -0.02 1.31 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.60 6.56 -2.39 -0.02 1.58 16 44 H 0.41 10.46 6.49 -92.71 -0.60 9.86 16 45 H 0.14 4.02 6.38 -2.91 -0.02 4.00 16 46 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 47 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 48 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 49 H 0.10 6.17 5.74 -2.91 -0.02 6.15 16 Total: -1.00 -69.14 375.35 3.73 -65.42 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.35 Total: 35.42 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 3.74 Total: -39.12 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -2.33 Total: -72.02 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.06 Total: -31.89 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -69.14 3.73 -65.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000510568465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.995 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds