Wall clock time and date at job start Tue Mar 31 2020 11:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46752 * 2 1 4 4 H 1.09004 * 109.47003 * 305.01627 * 3 2 1 5 5 C 1.53006 * 109.46821 * 185.01878 * 3 2 1 6 6 C 1.50705 * 109.47041 * 64.99962 * 5 3 2 7 7 C 1.38232 * 119.99519 * 269.72311 * 6 5 3 8 8 C 1.38245 * 119.99411 * 179.76569 * 7 6 5 9 9 C 1.38235 * 119.99816 * 0.51096 * 8 7 6 10 10 C 1.38231 * 120.00090 * 359.74591 * 9 8 7 11 11 C 1.38233 * 120.00328 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47399 * 65.01847 * 3 2 1 13 13 O 1.21290 * 120.00101 * 34.81817 * 12 3 2 14 14 N 1.34772 * 120.00179 * 214.81474 * 12 3 2 15 15 C 1.46502 * 120.00400 * 185.11993 * 14 12 3 16 16 C 1.50705 * 109.47096 * 270.00430 * 15 14 12 17 17 H 1.07999 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99899 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99548 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00070 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46845 * 90.00198 * 20 18 16 22 22 H 1.48503 * 109.46846 * 210.00097 * 20 18 16 23 23 H 1.48494 * 109.46993 * 330.00145 * 20 18 16 24 24 C 1.46499 * 119.99889 * 5.12437 * 14 12 3 25 25 C 1.53005 * 109.46851 * 265.97632 * 24 14 12 26 26 C 1.53007 * 117.49638 * 243.74327 * 25 24 14 27 27 C 1.53006 * 117.49525 * 175.08989 * 25 24 14 28 28 H 1.09006 * 109.46813 * 64.87989 * 1 2 3 29 29 H 1.09004 * 109.47107 * 184.87120 * 1 2 3 30 30 H 1.08991 * 109.47378 * 304.87591 * 1 2 3 31 31 H 1.08996 * 109.47668 * 240.00089 * 2 1 3 32 32 H 1.09002 * 109.47336 * 119.99148 * 2 1 3 33 33 H 1.09000 * 109.46795 * 184.99697 * 5 3 2 34 34 H 1.08993 * 109.47235 * 304.99727 * 5 3 2 35 35 H 1.07991 * 120.00797 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.99833 * 180.22854 * 8 7 6 37 37 H 1.08003 * 119.99532 * 179.71970 * 9 8 7 38 38 H 1.08004 * 119.99451 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.00146 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.46861 * 29.99842 * 15 14 12 41 41 H 1.08996 * 109.47500 * 150.00018 * 15 14 12 42 42 H 0.97004 * 119.99908 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.47496 * 145.97936 * 24 14 12 44 44 H 1.08996 * 109.47128 * 25.97593 * 24 14 12 45 45 H 1.08996 * 115.55255 * 29.41287 * 25 24 14 46 46 H 1.08998 * 117.49728 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49314 * 145.02044 * 26 25 24 48 48 H 1.08998 * 117.49470 * 214.97693 * 27 25 24 49 49 H 1.08993 * 117.49996 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9817 -0.8417 5 6 3.5647 1.4445 -0.1262 6 6 3.9584 0.8824 -1.4679 7 6 4.1850 -0.4739 -1.6095 8 6 4.5414 -0.9901 -2.8414 9 6 4.6815 -0.1486 -3.9291 10 6 4.4601 1.2083 -3.7862 11 6 4.0981 1.7238 -2.5558 12 6 1.6416 2.1162 1.2878 13 8 1.6085 1.4801 2.3200 14 7 1.3223 3.4256 1.2927 15 6 1.0443 4.1071 2.5594 16 6 -0.4265 4.0057 2.8722 17 1 -1.0880 3.4860 2.1949 18 6 -0.9275 4.5764 4.0229 19 7 -2.2109 4.4875 4.2960 20 14 0.2168 5.4747 5.1947 21 1 0.2909 6.9078 4.8128 22 1 -0.3031 5.3580 6.5809 23 1 1.5721 4.8723 5.1220 24 6 1.2531 4.1674 0.0313 25 6 2.5971 4.8488 -0.2339 26 6 2.6194 6.3784 -0.2665 27 6 2.7664 5.5826 -1.5658 28 1 -0.3633 0.4363 -0.9305 29 1 -0.3633 -1.0240 0.0873 30 1 -0.3634 0.5876 0.8430 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.9354 2.4656 -0.0371 34 1 3.9956 0.8312 0.6652 35 1 4.0795 -1.1308 -0.7589 36 1 4.7148 -2.0503 -2.9529 37 1 4.9643 -0.5514 -4.8905 38 1 4.5700 1.8658 -4.6360 39 1 3.9255 2.7840 -2.4441 40 1 1.6187 3.6378 3.3582 41 1 1.3267 5.1566 2.4771 42 1 -2.5634 4.8887 5.1058 43 1 0.4696 4.9224 0.0962 44 1 1.0278 3.4790 -0.7831 45 1 3.4705 4.3414 0.1758 46 1 1.6767 6.8991 -0.0986 47 1 3.5076 6.8771 0.1214 48 1 3.7513 5.5581 -2.0321 49 1 1.9206 5.5795 -2.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522126417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:41 Heat of formation + Delta-G solvation = 2.325793 kcal Electronic energy + Delta-G solvation = -27263.302624 eV Core-core repulsion = 23769.628330 eV Total energy + Delta-G solvation = -3493.674293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06310 -39.00136 -37.30072 -35.25741 -34.39187 -32.43486 -31.98794 -30.97997 -29.25270 -28.12015 -26.23516 -24.54178 -23.15004 -22.49206 -22.25791 -21.53141 -20.72957 -20.52404 -18.09745 -17.13351 -16.86486 -16.60169 -15.87684 -15.32017 -15.17485 -14.82021 -14.68944 -14.17336 -14.00402 -13.69859 -13.52762 -13.30903 -13.22658 -12.81198 -12.52502 -12.43352 -12.40145 -12.18965 -11.73353 -11.64886 -11.46397 -11.42238 -11.14402 -11.06794 -10.96946 -10.87056 -10.64267 -10.54923 -10.46067 -10.30710 -10.04755 -9.72127 -9.50408 -9.01977 -8.90123 -8.67409 -8.56677 -7.70049 -6.06177 -4.04123 1.25804 1.30686 3.27930 3.34713 3.36513 3.40645 3.67521 3.75966 3.98294 4.41790 4.62267 4.73012 4.85782 4.90561 4.95070 4.98592 5.01631 5.08919 5.21675 5.25495 5.27233 5.38992 5.42292 5.45931 5.54402 5.64049 5.66929 5.74575 5.81725 5.84422 5.90949 5.95558 5.98017 6.03675 6.07892 6.14065 6.20255 6.24008 6.37231 6.41017 6.43525 6.51586 6.60000 6.64903 6.73783 6.91920 7.00306 7.38683 7.64739 8.29826 8.50012 8.96597 9.04251 9.54664 11.07349 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004089 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.762166 B = 6846.380919 C = 7918.925881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.071 4.071 6 C -0.070 4.070 7 C -0.114 4.114 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.115 4.115 12 C 0.514 3.486 13 O -0.535 6.535 14 N -0.589 5.589 15 C 0.218 3.782 16 C -0.525 4.525 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.139 3.861 25 C -0.168 4.168 26 C -0.177 4.177 27 C -0.180 4.180 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.038 0.962 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.030 -4.494 -17.533 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.108 0.892 5 C -0.108 4.108 6 C -0.070 4.070 7 C -0.132 4.132 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.133 4.133 12 C 0.301 3.699 13 O -0.412 6.412 14 N -0.319 5.319 15 C 0.097 3.903 16 C -0.563 4.563 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.189 1.189 24 C 0.015 3.985 25 C -0.187 4.187 26 C -0.214 4.214 27 C -0.217 4.217 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.852 -4.769 -16.802 22.292 hybrid contribution 0.388 0.664 0.612 0.983 sum 14.240 -4.105 -16.190 21.948 Atomic orbital electron populations 1.21791 0.95534 1.01765 1.02107 1.21486 0.96344 0.94433 1.02361 1.21435 0.95699 0.98047 0.97303 0.89208 1.20549 0.94254 1.01925 0.94109 1.19854 0.98165 0.93637 0.95320 1.21129 0.99549 0.94876 0.97670 1.21130 1.00094 0.99626 0.93047 1.21109 1.01108 0.93852 0.98632 1.21120 0.99931 0.95385 0.97370 1.21111 0.99828 0.99909 0.92464 1.20265 0.77515 0.81984 0.90134 1.90667 1.52914 1.63257 1.34347 1.47885 1.67226 1.08849 1.07951 1.19626 0.97543 0.91689 0.81421 1.21328 0.91571 1.35668 1.07743 0.90795 1.24847 0.94912 0.95910 0.97330 1.69898 1.12352 1.45277 1.26183 0.86888 0.81910 0.80251 0.80950 1.20144 1.21015 1.18896 1.21117 0.94673 0.96152 0.86581 1.22956 1.00231 0.94795 1.00747 1.23034 1.03379 0.94056 1.00929 1.22928 1.02628 1.05271 0.90887 0.93293 0.92884 0.91622 0.91465 0.90889 0.90497 0.90288 0.85944 0.86310 0.86483 0.86304 0.85860 0.94452 0.95662 0.92643 0.89776 0.90555 0.87837 0.88398 0.89201 0.89124 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.80 37.16 0.36 -2.01 16 2 C -0.11 -1.56 4.89 -26.73 -0.13 -1.69 16 3 C -0.10 -1.52 1.75 -91.77 -0.16 -1.68 16 4 H 0.09 1.22 5.59 -51.93 -0.29 0.93 16 5 C -0.07 -0.89 4.82 -27.88 -0.13 -1.02 16 6 C -0.07 -0.77 4.71 -104.62 -0.49 -1.26 16 7 C -0.11 -1.19 7.89 -39.58 -0.31 -1.51 16 8 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 9 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 10 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 11 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 12 C 0.51 10.21 5.62 -10.99 -0.06 10.15 16 13 O -0.54 -13.01 15.63 5.55 0.09 -12.92 16 14 N -0.59 -11.82 2.46 -175.06 -0.43 -12.25 16 15 C 0.22 5.29 4.21 -5.19 -0.02 5.27 16 16 C -0.52 -15.04 9.94 -34.44 -0.34 -15.38 16 17 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 20 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 24 C 0.14 2.17 5.51 -4.04 -0.02 2.14 16 25 C -0.17 -2.15 5.91 -90.61 -0.54 -2.69 16 26 C -0.18 -2.12 10.18 -26.69 -0.27 -2.39 16 27 C -0.18 -1.81 10.25 -26.69 -0.27 -2.08 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.26 7.10 -51.93 -0.37 0.89 16 31 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 32 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 33 H 0.08 0.94 6.30 -51.93 -0.33 0.61 16 34 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.12 1.19 8.01 -52.49 -0.42 0.77 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.04 0.99 6.55 -51.93 -0.34 0.65 16 41 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.08 1.40 7.84 -51.93 -0.41 1.00 16 44 H 0.08 1.04 5.68 -51.93 -0.29 0.75 16 45 H 0.10 1.36 6.48 -51.93 -0.34 1.02 16 46 H 0.10 1.23 8.03 -51.93 -0.42 0.81 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -33.28 391.16 -10.53 -43.81 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.11 Total: 3.77 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -4.07 Total: -18.25 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.34 Total: -39.30 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.28 -10.53 -43.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522126417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.132 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds