Wall clock time and date at job start Tue Mar 31 2020 11:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46752 * 2 1 4 4 H 1.09004 * 109.47003 * 305.01627 * 3 2 1 5 5 C 1.53006 * 109.46821 * 185.01878 * 3 2 1 6 6 C 1.50705 * 109.47041 * 64.99962 * 5 3 2 7 7 C 1.38232 * 119.99519 * 269.72311 * 6 5 3 8 8 C 1.38245 * 119.99411 * 179.76569 * 7 6 5 9 9 C 1.38235 * 119.99816 * 0.51096 * 8 7 6 10 10 C 1.38231 * 120.00090 * 359.74591 * 9 8 7 11 11 C 1.38233 * 120.00328 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47399 * 65.01847 * 3 2 1 13 13 O 1.21290 * 120.00101 * 34.81817 * 12 3 2 14 14 N 1.34772 * 120.00179 * 214.81474 * 12 3 2 15 15 C 1.46502 * 120.00400 * 185.11993 * 14 12 3 16 16 C 1.50705 * 109.47096 * 270.00430 * 15 14 12 17 17 H 1.07999 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99899 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99548 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00070 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46845 * 90.00198 * 20 18 16 22 22 H 1.48503 * 109.46846 * 210.00097 * 20 18 16 23 23 H 1.48494 * 109.46993 * 330.00145 * 20 18 16 24 24 C 1.46499 * 119.99889 * 5.12437 * 14 12 3 25 25 C 1.53005 * 109.46851 * 265.97632 * 24 14 12 26 26 C 1.53007 * 117.49638 * 243.74327 * 25 24 14 27 27 C 1.53006 * 117.49525 * 175.08989 * 25 24 14 28 28 H 1.09006 * 109.46813 * 64.87989 * 1 2 3 29 29 H 1.09004 * 109.47107 * 184.87120 * 1 2 3 30 30 H 1.08991 * 109.47378 * 304.87591 * 1 2 3 31 31 H 1.08996 * 109.47668 * 240.00089 * 2 1 3 32 32 H 1.09002 * 109.47336 * 119.99148 * 2 1 3 33 33 H 1.09000 * 109.46795 * 184.99697 * 5 3 2 34 34 H 1.08993 * 109.47235 * 304.99727 * 5 3 2 35 35 H 1.07991 * 120.00797 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.99833 * 180.22854 * 8 7 6 37 37 H 1.08003 * 119.99532 * 179.71970 * 9 8 7 38 38 H 1.08004 * 119.99451 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.00146 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.46861 * 29.99842 * 15 14 12 41 41 H 1.08996 * 109.47500 * 150.00018 * 15 14 12 42 42 H 0.97004 * 119.99908 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.47496 * 145.97936 * 24 14 12 44 44 H 1.08996 * 109.47128 * 25.97593 * 24 14 12 45 45 H 1.08996 * 115.55255 * 29.41287 * 25 24 14 46 46 H 1.08998 * 117.49728 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49314 * 145.02044 * 26 25 24 48 48 H 1.08998 * 117.49470 * 214.97693 * 27 25 24 49 49 H 1.08993 * 117.49996 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9817 -0.8417 5 6 3.5647 1.4445 -0.1262 6 6 3.9584 0.8824 -1.4679 7 6 4.1850 -0.4739 -1.6095 8 6 4.5414 -0.9901 -2.8414 9 6 4.6815 -0.1486 -3.9291 10 6 4.4601 1.2083 -3.7862 11 6 4.0981 1.7238 -2.5558 12 6 1.6416 2.1162 1.2878 13 8 1.6085 1.4801 2.3200 14 7 1.3223 3.4256 1.2927 15 6 1.0443 4.1071 2.5594 16 6 -0.4265 4.0057 2.8722 17 1 -1.0880 3.4860 2.1949 18 6 -0.9275 4.5764 4.0229 19 7 -2.2109 4.4875 4.2960 20 14 0.2168 5.4747 5.1947 21 1 0.2909 6.9078 4.8128 22 1 -0.3031 5.3580 6.5809 23 1 1.5721 4.8723 5.1220 24 6 1.2531 4.1674 0.0313 25 6 2.5971 4.8488 -0.2339 26 6 2.6194 6.3784 -0.2665 27 6 2.7664 5.5826 -1.5658 28 1 -0.3633 0.4363 -0.9305 29 1 -0.3633 -1.0240 0.0873 30 1 -0.3634 0.5876 0.8430 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.9354 2.4656 -0.0371 34 1 3.9956 0.8312 0.6652 35 1 4.0795 -1.1308 -0.7589 36 1 4.7148 -2.0503 -2.9529 37 1 4.9643 -0.5514 -4.8905 38 1 4.5700 1.8658 -4.6360 39 1 3.9255 2.7840 -2.4441 40 1 1.6187 3.6378 3.3582 41 1 1.3267 5.1566 2.4771 42 1 -2.5634 4.8887 5.1058 43 1 0.4696 4.9224 0.0962 44 1 1.0278 3.4790 -0.7831 45 1 3.4705 4.3414 0.1758 46 1 1.6767 6.8991 -0.0986 47 1 3.5076 6.8771 0.1214 48 1 3.7513 5.5581 -2.0321 49 1 1.9206 5.5795 -2.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522126417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:40 Heat of formation + Delta-G solvation = -15.063827 kcal Electronic energy + Delta-G solvation = -27264.056694 eV Core-core repulsion = 23769.628330 eV Total energy + Delta-G solvation = -3494.428364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37286 -39.95508 -38.42661 -36.54640 -35.95952 -34.57113 -32.97063 -31.67334 -30.88454 -29.45560 -27.65645 -25.80673 -24.63537 -23.45063 -23.12203 -22.66374 -21.77513 -21.71303 -19.53522 -19.09193 -18.40347 -17.45772 -17.35080 -16.49562 -16.17936 -15.93415 -15.89663 -15.76254 -15.13132 -15.03328 -14.76061 -14.47766 -14.33700 -14.14497 -13.87868 -13.68883 -13.58109 -13.53236 -13.38933 -13.01868 -12.80314 -12.61469 -12.46418 -12.27797 -12.15990 -12.02463 -11.88526 -11.86614 -11.78750 -11.73810 -11.59347 -11.20988 -10.83136 -10.77715 -10.45472 -9.68913 -9.50838 -9.40653 -8.34605 -6.38844 0.52543 0.61441 1.29081 1.33700 1.44377 1.81689 2.26332 2.29937 2.95366 2.99705 3.00440 3.49111 3.73564 3.90004 3.96754 4.06270 4.08940 4.13275 4.18277 4.26101 4.28639 4.37984 4.41889 4.46041 4.57066 4.64643 4.68425 4.74233 4.76342 4.79734 4.85596 4.89293 4.93887 4.95119 5.03192 5.05238 5.11461 5.22597 5.27618 5.30960 5.33093 5.35868 5.37492 5.47223 5.66582 5.68667 5.73935 5.83488 6.23105 6.24089 6.61950 6.72232 7.21754 7.45276 8.82599 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004089 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.762166 B = 6846.380919 C = 7918.925881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.088 4.088 4 H 0.107 0.893 5 C -0.061 4.061 6 C -0.083 4.083 7 C -0.128 4.128 8 C -0.127 4.127 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.120 4.120 12 C 0.507 3.493 13 O -0.591 6.591 14 N -0.595 5.595 15 C 0.230 3.770 16 C -0.532 4.532 17 H 0.027 0.973 18 C 0.012 3.988 19 N -0.945 5.945 20 Si 0.945 3.055 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.257 1.257 24 C 0.137 3.863 25 C -0.181 4.181 26 C -0.189 4.189 27 C -0.145 4.145 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.016 0.984 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.015 0.985 41 H 0.044 0.956 42 H 0.268 0.732 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.115 0.885 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.668 -3.715 -20.462 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.109 4.109 4 H 0.125 0.875 5 C -0.099 4.099 6 C -0.083 4.083 7 C -0.146 4.146 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.138 4.138 12 C 0.297 3.703 13 O -0.471 6.471 14 N -0.324 5.324 15 C 0.107 3.893 16 C -0.570 4.570 17 H 0.045 0.955 18 C -0.186 4.186 19 N -0.586 5.586 20 Si 0.768 3.232 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.181 1.181 24 C 0.014 3.986 25 C -0.200 4.200 26 C -0.226 4.226 27 C -0.182 4.182 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.117 0.883 48 H 0.134 0.866 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.501 -3.970 -19.790 26.071 hybrid contribution -0.509 0.347 1.433 1.560 sum 15.992 -3.623 -18.357 24.614 Atomic orbital electron populations 1.21773 0.96461 1.01908 1.00819 1.21477 0.95396 0.94359 1.02847 1.21388 0.97630 0.97581 0.94328 0.87532 1.20424 0.92058 1.02204 0.95185 1.19695 0.99894 0.94115 0.94562 1.21242 1.00155 0.94796 0.98379 1.21385 0.99623 1.00780 0.92682 1.21463 1.00015 0.93898 0.99432 1.21428 0.99091 0.95919 0.97657 1.21287 0.99654 1.00416 0.92468 1.21244 0.76143 0.81581 0.91382 1.90627 1.55272 1.64427 1.36818 1.47966 1.66820 1.09445 1.08180 1.19233 0.94081 0.92757 0.83209 1.21541 0.93372 1.34900 1.07213 0.95510 1.25827 0.96627 0.96897 0.99270 1.70054 1.14593 1.46773 1.27159 0.85746 0.79490 0.79902 0.78056 1.17466 1.20707 1.18149 1.21321 0.96318 0.96006 0.84923 1.22721 0.98140 0.95145 1.04042 1.23109 1.03341 0.93224 1.02963 1.23042 1.04392 1.01208 0.89587 0.91444 0.91463 0.96515 0.88471 0.92716 0.90026 0.91575 0.86078 0.84615 0.84258 0.84070 0.84725 0.96661 0.93783 0.92326 0.91415 0.88526 0.87919 0.89504 0.88303 0.86641 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.80 71.98 0.71 -4.08 16 2 C -0.10 -2.95 4.89 30.60 0.15 -2.81 16 3 C -0.09 -2.57 1.75 -11.54 -0.02 -2.59 16 4 H 0.11 2.72 5.59 -2.39 -0.01 2.71 16 5 C -0.06 -1.48 4.82 29.85 0.14 -1.33 16 6 C -0.08 -1.65 4.71 -19.87 -0.09 -1.74 16 7 C -0.13 -2.42 7.89 22.27 0.18 -2.24 16 8 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 9 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 10 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 11 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 12 C 0.51 20.96 5.62 87.66 0.49 21.45 16 13 O -0.59 -30.55 15.63 -3.06 -0.05 -30.59 16 14 N -0.59 -24.61 2.46 -826.14 -2.03 -26.64 16 15 C 0.23 11.51 4.21 85.63 0.36 11.87 16 16 C -0.53 -32.08 9.94 25.60 0.25 -31.82 16 17 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 18 C 0.01 0.70 5.47 84.66 0.46 1.16 16 19 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 20 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 21 H -0.25 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.26 -12.01 6.54 99.48 0.65 -11.35 16 24 C 0.14 4.21 5.51 86.38 0.48 4.69 16 25 C -0.18 -4.29 5.91 -10.79 -0.06 -4.35 16 26 C -0.19 -4.12 10.18 30.62 0.31 -3.81 16 27 C -0.15 -2.37 10.25 30.62 0.31 -2.06 16 28 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.02 0.66 7.10 -2.39 -0.02 0.64 16 31 H 0.10 2.23 5.94 -2.39 -0.01 2.21 16 32 H 0.05 1.77 7.68 -2.39 -0.02 1.75 16 33 H 0.08 1.88 6.30 -2.39 -0.02 1.87 16 34 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.12 2.24 8.01 -2.92 -0.02 2.21 16 36 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.02 0.84 6.55 -2.39 -0.02 0.82 16 41 H 0.04 2.04 7.50 -2.39 -0.02 2.02 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.07 2.29 7.84 -2.39 -0.02 2.27 16 44 H 0.10 2.52 5.68 -2.39 -0.01 2.50 16 45 H 0.10 2.50 6.48 -2.39 -0.02 2.48 16 46 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 47 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -77.78 391.16 5.52 -72.25 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.86 Total: 22.56 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.56 Total: -24.38 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.73 Total: -87.20 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -77.78 5.52 -72.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522126417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.189 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds