Wall clock time and date at job start Tue Mar 31 2020 11:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 H 1.09009 * 109.46854 * 176.83352 * 3 2 1 5 5 C 1.52994 * 109.47228 * 296.83113 * 3 2 1 6 6 C 1.50698 * 109.47537 * 295.10266 * 5 3 2 7 7 C 1.38240 * 119.99781 * 275.45749 * 6 5 3 8 8 C 1.38234 * 119.99941 * 179.76547 * 7 6 5 9 9 C 1.38241 * 119.99809 * 0.50453 * 8 7 6 10 10 C 1.38237 * 120.00113 * 359.74225 * 9 8 7 11 11 C 1.38233 * 120.00141 * 95.72481 * 6 5 3 12 12 C 1.50701 * 109.47436 * 56.83707 * 3 2 1 13 13 O 1.21296 * 119.99780 * 254.27168 * 12 3 2 14 14 N 1.34770 * 120.00136 * 74.26630 * 12 3 2 15 15 C 1.37101 * 120.00138 * 4.51062 * 14 12 3 16 16 H 1.08000 * 119.99973 * 232.58992 * 15 14 12 17 17 C 1.38945 * 120.00087 * 52.59022 * 15 14 12 18 18 N 1.31414 * 120.00416 * 198.84382 * 17 15 14 19 19 Si 1.86800 * 120.00109 * 18.84666 * 17 15 14 20 20 H 1.48499 * 109.47361 * 90.70273 * 19 17 15 21 21 H 1.48496 * 109.47493 * 210.70524 * 19 17 15 22 22 H 1.48508 * 109.46909 * 330.70774 * 19 17 15 23 23 C 1.46503 * 120.00130 * 184.50493 * 14 12 3 24 24 C 1.55238 * 110.47130 * 230.21130 * 23 14 12 25 25 C 1.54889 * 102.58785 * 203.39542 * 24 23 14 26 26 C 1.54268 * 104.31329 * 37.93160 * 25 24 23 27 27 C 1.53877 * 106.59806 * 336.32074 * 26 25 24 28 28 H 1.08992 * 109.47201 * 65.53320 * 1 2 3 29 29 H 1.09000 * 109.47051 * 185.53708 * 1 2 3 30 30 H 1.08997 * 109.47032 * 305.53458 * 1 2 3 31 31 H 1.08996 * 109.46864 * 239.99670 * 2 1 3 32 32 H 1.09000 * 109.46927 * 120.00108 * 2 1 3 33 33 H 1.09004 * 109.47333 * 55.10442 * 5 3 2 34 34 H 1.09000 * 109.47139 * 175.10128 * 5 3 2 35 35 H 1.08000 * 120.00394 * 359.97438 * 7 6 5 36 36 H 1.07992 * 120.00449 * 180.22921 * 8 7 6 37 37 H 1.07999 * 119.99950 * 179.73233 * 9 8 7 38 38 H 1.07990 * 120.00128 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.99894 * 0.02562 * 11 6 5 40 40 H 0.97001 * 120.00471 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.43369 * 352.86275 * 23 14 12 42 42 H 1.09001 * 110.89621 * 85.10190 * 24 23 14 43 43 H 1.09003 * 110.76135 * 321.62262 * 24 23 14 44 44 H 1.08999 * 110.48456 * 279.18839 * 25 24 23 45 45 H 1.08998 * 110.48651 * 156.67174 * 25 24 23 46 46 H 1.08993 * 110.03293 * 95.61018 * 26 25 24 47 47 H 1.09004 * 110.03090 * 216.99331 * 26 25 24 48 48 H 1.09005 * 110.02817 * 119.28561 * 27 26 25 49 49 H 1.08997 * 110.03280 * 240.66499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 0.0568 5 6 1.5961 2.1403 -1.2871 6 6 2.2579 1.4813 -2.4698 7 6 3.5317 1.8611 -2.8494 8 6 4.1406 1.2532 -3.9313 9 6 3.4717 0.2728 -4.6401 10 6 2.1959 -0.1035 -4.2636 11 6 1.5890 0.5008 -3.1785 12 6 1.4747 2.1752 1.1894 13 8 0.5876 2.9880 1.0354 14 7 1.9547 1.9273 2.4241 15 6 3.0186 1.0784 2.5883 16 1 2.9490 0.2532 3.2815 17 6 4.1864 1.2796 1.8629 18 7 5.0513 0.2999 1.7248 19 14 4.5271 2.9429 1.0838 20 1 5.2861 3.7904 2.0382 21 1 5.3251 2.7554 -0.1544 22 1 3.2409 3.6052 0.7485 23 6 1.3396 2.5651 3.5908 24 6 2.4238 3.2322 4.4794 25 6 1.7357 3.2891 5.8659 26 6 0.9480 1.9657 5.9554 27 6 0.6961 1.5054 4.5088 28 1 -0.3633 0.4256 -0.9353 29 1 -0.3633 -1.0229 0.0992 30 1 -0.3633 0.5973 0.8363 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5134 2.0636 -1.3873 34 1 1.8839 3.1909 -1.2486 35 1 4.0525 2.6305 -2.2987 36 1 5.1372 1.5473 -4.2257 37 1 3.9457 -0.1991 -5.4880 38 1 1.6732 -0.8691 -4.8175 39 1 0.5919 0.2074 -2.8848 40 1 5.8665 0.4403 1.2181 41 1 0.5973 3.2987 3.2763 42 1 2.6562 4.2354 4.1219 43 1 3.3228 2.6171 4.5192 44 1 1.0579 4.1410 5.9206 45 1 2.4808 3.3439 6.6595 46 1 1.5344 1.2175 6.4885 47 1 -0.0008 2.1298 6.4663 48 1 1.1604 0.5337 4.3400 49 1 -0.3752 1.4454 4.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524583865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:53 Heat of formation + Delta-G solvation = -24.163132 kcal Electronic energy + Delta-G solvation = -28203.404748 eV Core-core repulsion = 24708.581809 eV Total energy + Delta-G solvation = -3494.822939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.83993 -38.83553 -37.12682 -34.76146 -34.17069 -31.81594 -31.33842 -30.61878 -28.36013 -28.09885 -27.11902 -24.75333 -24.30625 -22.34128 -21.91452 -20.81850 -19.90846 -19.48498 -18.63907 -17.00635 -16.40330 -15.90302 -15.44477 -15.12209 -14.94330 -14.66163 -14.53793 -14.07496 -13.78959 -13.48053 -13.09972 -12.89508 -12.80607 -12.62559 -12.56543 -12.33536 -11.95609 -11.82552 -11.54967 -11.32979 -11.20648 -10.93207 -10.80374 -10.71011 -10.66913 -10.57792 -10.53584 -10.42422 -10.12555 -10.03053 -9.99996 -9.74434 -9.63900 -8.98824 -8.67706 -8.48135 -8.30670 -7.49230 -6.48619 -4.20893 1.62782 1.65137 3.06921 3.18157 3.27674 3.80404 4.02032 4.10406 4.45682 4.86776 5.10566 5.12870 5.21837 5.24997 5.26049 5.35071 5.44438 5.57420 5.68202 5.75808 5.79100 5.83656 5.99527 6.01727 6.07081 6.10953 6.12658 6.16527 6.17376 6.24204 6.30159 6.35303 6.40461 6.41246 6.45829 6.55811 6.58164 6.60218 6.71095 6.74074 6.82752 6.83908 6.89054 6.92491 7.03718 7.09662 7.18585 7.27993 7.70663 7.82041 8.49409 8.99630 9.32764 9.77045 10.60154 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.004977 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.354508 B = 5624.637206 C = 6258.475071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.088 4.088 4 H 0.094 0.906 5 C -0.072 4.072 6 C -0.064 4.064 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.114 4.114 12 C 0.507 3.493 13 O -0.597 6.597 14 N -0.468 5.468 15 C -0.338 4.338 16 H 0.098 0.902 17 C 0.080 3.920 18 N -0.855 5.855 19 Si 0.844 3.156 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.252 1.252 23 C 0.130 3.870 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.128 4.128 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.275 0.725 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 0.058 -4.281 5.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.108 4.108 4 H 0.111 0.889 5 C -0.109 4.109 6 C -0.064 4.064 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.132 4.132 12 C 0.297 3.703 13 O -0.482 6.482 14 N -0.188 5.188 15 C -0.466 4.466 16 H 0.116 0.884 17 C -0.127 4.127 18 N -0.490 5.490 19 Si 0.669 3.331 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.176 1.176 23 C 0.026 3.974 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.167 4.167 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.112 0.364 -4.403 6.036 hybrid contribution 0.699 0.811 -0.319 1.118 sum -3.413 1.176 -4.722 5.944 Atomic orbital electron populations 1.21843 0.96755 1.00512 1.01558 1.21299 0.94786 0.94732 1.03272 1.21189 1.02078 0.96065 0.91518 0.88851 1.20583 1.00725 0.98732 0.90885 1.20002 0.94327 0.96001 0.96031 1.21114 0.95006 1.00483 0.97095 1.21075 0.99567 0.96986 0.95970 1.21037 0.95365 0.98362 1.00264 1.21080 0.95495 0.99954 0.97410 1.21078 1.00162 0.96471 0.95511 1.20388 0.81969 0.82747 0.85159 1.90512 1.33714 1.37760 1.86191 1.43665 1.29792 1.42001 1.03349 1.18722 0.90772 1.08211 1.28845 0.88447 1.25526 0.95269 0.96315 0.95640 1.69706 1.10848 1.30540 1.37868 0.87388 0.79856 0.86251 0.79621 1.20441 1.20274 1.17610 1.21924 0.94775 0.93986 0.86693 1.22815 0.99946 1.00183 0.93744 1.22270 0.98751 0.97259 0.97656 1.22032 0.99208 0.97225 0.97035 1.22391 0.99669 1.00688 0.93956 0.93395 0.93541 0.92529 0.92204 0.89459 0.90089 0.91331 0.86646 0.86481 0.86584 0.86435 0.86040 0.91466 0.89903 0.92827 0.89269 0.92397 0.92221 0.92132 0.92768 0.90574 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.31 37.16 0.35 -2.27 16 2 C -0.10 -2.03 5.33 -26.73 -0.14 -2.17 16 3 C -0.09 -1.88 0.97 -91.78 -0.09 -1.97 16 4 H 0.09 2.18 3.16 -51.92 -0.16 2.02 16 5 C -0.07 -1.39 3.98 -27.89 -0.11 -1.50 16 6 C -0.06 -1.10 4.54 -104.62 -0.47 -1.58 16 7 C -0.12 -2.05 9.72 -39.58 -0.38 -2.43 16 8 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 9 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 10 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 11 C -0.11 -1.74 8.32 -39.58 -0.33 -2.07 16 12 C 0.51 11.90 3.01 -10.99 -0.03 11.87 16 13 O -0.60 -14.98 15.30 5.54 0.08 -14.90 16 14 N -0.47 -10.78 1.97 -105.77 -0.21 -10.98 16 15 C -0.34 -8.28 6.18 -14.93 -0.09 -8.37 16 16 H 0.10 2.55 7.26 -52.49 -0.38 2.17 16 17 C 0.08 2.02 4.07 -17.47 -0.07 1.95 16 18 N -0.86 -22.51 13.96 55.50 0.77 -21.74 16 19 Si 0.84 20.09 25.09 -169.99 -4.27 15.83 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.25 -6.20 5.44 56.52 0.31 -5.89 16 23 C 0.13 2.68 3.26 -66.08 -0.22 2.46 16 24 C -0.13 -2.44 6.39 -24.55 -0.16 -2.59 16 25 C -0.12 -1.85 6.82 -25.07 -0.17 -2.02 16 26 C -0.12 -1.76 6.80 -25.61 -0.17 -1.93 16 27 C -0.13 -2.30 6.43 -25.61 -0.16 -2.46 16 28 H 0.05 0.77 5.87 -51.93 -0.30 0.46 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.10 6.80 -51.93 -0.35 0.75 16 31 H 0.06 1.12 6.35 -51.93 -0.33 0.79 16 32 H 0.09 1.91 6.99 -51.93 -0.36 1.55 16 33 H 0.08 1.51 6.26 -51.93 -0.32 1.18 16 34 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.68 7.24 -52.49 -0.38 1.30 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.08 1.79 7.00 -51.93 -0.36 1.42 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.86 7.01 -51.93 -0.36 1.49 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.47 6.81 -51.93 -0.35 1.12 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -27.35 367.64 -9.51 -36.87 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.98 Total: 10.82 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.46 Total: -21.44 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.57 Total: -32.72 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.08 Total: -14.90 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.27 Total: 15.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.35 -9.51 -36.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524583865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.705 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds