Wall clock time and date at job start Tue Mar 31 2020 11:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46950 * 2 1 4 4 H 1.09009 * 109.46854 * 176.83352 * 3 2 1 5 5 C 1.52994 * 109.47228 * 296.83113 * 3 2 1 6 6 C 1.50698 * 109.47537 * 295.10266 * 5 3 2 7 7 C 1.38240 * 119.99781 * 275.45749 * 6 5 3 8 8 C 1.38234 * 119.99941 * 179.76547 * 7 6 5 9 9 C 1.38241 * 119.99809 * 0.50453 * 8 7 6 10 10 C 1.38237 * 120.00113 * 359.74225 * 9 8 7 11 11 C 1.38233 * 120.00141 * 95.72481 * 6 5 3 12 12 C 1.50701 * 109.47436 * 56.83707 * 3 2 1 13 13 O 1.21296 * 119.99780 * 254.27168 * 12 3 2 14 14 N 1.34770 * 120.00136 * 74.26630 * 12 3 2 15 15 C 1.37101 * 120.00138 * 4.51062 * 14 12 3 16 16 H 1.08000 * 119.99973 * 232.58992 * 15 14 12 17 17 C 1.38945 * 120.00087 * 52.59022 * 15 14 12 18 18 N 1.31414 * 120.00416 * 198.84382 * 17 15 14 19 19 Si 1.86800 * 120.00109 * 18.84666 * 17 15 14 20 20 H 1.48499 * 109.47361 * 90.70273 * 19 17 15 21 21 H 1.48496 * 109.47493 * 210.70524 * 19 17 15 22 22 H 1.48508 * 109.46909 * 330.70774 * 19 17 15 23 23 C 1.46503 * 120.00130 * 184.50493 * 14 12 3 24 24 C 1.55238 * 110.47130 * 230.21130 * 23 14 12 25 25 C 1.54889 * 102.58785 * 203.39542 * 24 23 14 26 26 C 1.54268 * 104.31329 * 37.93160 * 25 24 23 27 27 C 1.53877 * 106.59806 * 336.32074 * 26 25 24 28 28 H 1.08992 * 109.47201 * 65.53320 * 1 2 3 29 29 H 1.09000 * 109.47051 * 185.53708 * 1 2 3 30 30 H 1.08997 * 109.47032 * 305.53458 * 1 2 3 31 31 H 1.08996 * 109.46864 * 239.99670 * 2 1 3 32 32 H 1.09000 * 109.46927 * 120.00108 * 2 1 3 33 33 H 1.09004 * 109.47333 * 55.10442 * 5 3 2 34 34 H 1.09000 * 109.47139 * 175.10128 * 5 3 2 35 35 H 1.08000 * 120.00394 * 359.97438 * 7 6 5 36 36 H 1.07992 * 120.00449 * 180.22921 * 8 7 6 37 37 H 1.07999 * 119.99950 * 179.73233 * 9 8 7 38 38 H 1.07990 * 120.00128 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.99894 * 0.02562 * 11 6 5 40 40 H 0.97001 * 120.00471 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.43369 * 352.86275 * 23 14 12 42 42 H 1.09001 * 110.89621 * 85.10190 * 24 23 14 43 43 H 1.09003 * 110.76135 * 321.62262 * 24 23 14 44 44 H 1.08999 * 110.48456 * 279.18839 * 25 24 23 45 45 H 1.08998 * 110.48651 * 156.67174 * 25 24 23 46 46 H 1.08993 * 110.03293 * 95.61018 * 26 25 24 47 47 H 1.09004 * 110.03090 * 216.99331 * 26 25 24 48 48 H 1.09005 * 110.02817 * 119.28561 * 27 26 25 49 49 H 1.08997 * 110.03280 * 240.66499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 0.0568 5 6 1.5961 2.1403 -1.2871 6 6 2.2579 1.4813 -2.4698 7 6 3.5317 1.8611 -2.8494 8 6 4.1406 1.2532 -3.9313 9 6 3.4717 0.2728 -4.6401 10 6 2.1959 -0.1035 -4.2636 11 6 1.5890 0.5008 -3.1785 12 6 1.4747 2.1752 1.1894 13 8 0.5876 2.9880 1.0354 14 7 1.9547 1.9273 2.4241 15 6 3.0186 1.0784 2.5883 16 1 2.9490 0.2532 3.2815 17 6 4.1864 1.2796 1.8629 18 7 5.0513 0.2999 1.7248 19 14 4.5271 2.9429 1.0838 20 1 5.2861 3.7904 2.0382 21 1 5.3251 2.7554 -0.1544 22 1 3.2409 3.6052 0.7485 23 6 1.3396 2.5651 3.5908 24 6 2.4238 3.2322 4.4794 25 6 1.7357 3.2891 5.8659 26 6 0.9480 1.9657 5.9554 27 6 0.6961 1.5054 4.5088 28 1 -0.3633 0.4256 -0.9353 29 1 -0.3633 -1.0229 0.0992 30 1 -0.3633 0.5973 0.8363 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5134 2.0636 -1.3873 34 1 1.8839 3.1909 -1.2486 35 1 4.0525 2.6305 -2.2987 36 1 5.1372 1.5473 -4.2257 37 1 3.9457 -0.1991 -5.4880 38 1 1.6732 -0.8691 -4.8175 39 1 0.5919 0.2074 -2.8848 40 1 5.8665 0.4403 1.2181 41 1 0.5973 3.2987 3.2763 42 1 2.6562 4.2354 4.1219 43 1 3.3228 2.6171 4.5192 44 1 1.0579 4.1410 5.9206 45 1 2.4808 3.3439 6.6595 46 1 1.5344 1.2175 6.4885 47 1 -0.0008 2.1298 6.4663 48 1 1.1604 0.5337 4.3400 49 1 -0.3752 1.4454 4.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524583865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:52 Heat of formation + Delta-G solvation = -36.048008 kcal Electronic energy + Delta-G solvation = -28203.920115 eV Core-core repulsion = 24708.581809 eV Total energy + Delta-G solvation = -3495.338306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53161 -40.15712 -38.64831 -36.46513 -35.89303 -33.74929 -32.66981 -31.77356 -29.85768 -29.53292 -28.61336 -26.63384 -25.83928 -23.60334 -23.35813 -22.19372 -21.33823 -21.15107 -20.29778 -18.83377 -17.71599 -17.47770 -17.22181 -16.66251 -16.40258 -16.10789 -15.97728 -15.61971 -15.50215 -15.03901 -14.67361 -14.36744 -14.26302 -14.16696 -13.92562 -13.74721 -13.52103 -13.33102 -13.04926 -13.00932 -12.84376 -12.71885 -12.45272 -12.18322 -12.03407 -11.99237 -11.91684 -11.85228 -11.84372 -11.61919 -11.44196 -11.35320 -11.22216 -10.92482 -10.34435 -9.80794 -9.57220 -9.38104 -8.51401 -6.22054 0.44616 0.49819 1.10719 1.19897 1.29052 1.91945 2.11115 2.65201 2.89032 2.93372 3.74288 3.82753 3.84495 3.88793 4.06668 4.10585 4.12970 4.15654 4.20229 4.30158 4.46847 4.51941 4.54477 4.60643 4.64191 4.66697 4.70577 4.73777 4.75907 4.80748 4.88864 4.97631 5.01587 5.06623 5.12668 5.13140 5.18130 5.22624 5.23775 5.35319 5.36687 5.46359 5.53704 5.55572 5.59650 5.61990 5.73894 5.75919 5.92926 6.13658 6.49204 7.00354 7.41078 7.86433 8.60766 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.004977 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.354508 B = 5624.637206 C = 6258.475071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.088 4.088 4 H 0.073 0.927 5 C -0.062 4.062 6 C -0.085 4.085 7 C -0.146 4.146 8 C -0.125 4.125 9 C -0.126 4.126 10 C -0.116 4.116 11 C -0.119 4.119 12 C 0.500 3.500 13 O -0.618 6.618 14 N -0.473 5.473 15 C -0.321 4.321 16 H 0.079 0.921 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.879 3.121 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.269 1.269 23 C 0.118 3.882 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.110 4.110 27 C -0.123 4.123 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.278 0.722 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -0.872 -5.135 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.099 4.099 6 C -0.085 4.085 7 C -0.164 4.164 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.134 4.134 11 C -0.137 4.137 12 C 0.292 3.708 13 O -0.504 6.504 14 N -0.194 5.194 15 C -0.449 4.449 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.517 5.517 19 Si 0.705 3.295 20 H -0.208 1.208 21 H -0.194 1.194 22 H -0.194 1.194 23 C 0.014 3.986 24 C -0.168 4.168 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.161 4.161 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.927 -0.563 -5.242 7.217 hybrid contribution 0.924 1.086 -0.099 1.430 sum -4.003 0.523 -5.341 6.695 Atomic orbital electron populations 1.21760 0.94841 1.01771 1.01364 1.21206 0.96365 0.93211 1.02439 1.21190 1.00685 0.97245 0.91804 0.90901 1.20430 1.01033 0.97461 0.91011 1.19881 0.94830 0.97600 0.96162 1.21145 0.95458 1.01236 0.98562 1.21353 1.00520 0.97143 0.95234 1.21480 0.95253 0.97159 1.00487 1.21507 0.95549 0.99832 0.96512 1.21274 1.00744 0.95845 0.95866 1.20801 0.81707 0.82520 0.85822 1.90479 1.34728 1.38646 1.86555 1.43790 1.29466 1.41874 1.04228 1.18453 0.90924 1.07728 1.27771 0.90364 1.25717 0.95326 0.97314 0.95946 1.69739 1.11490 1.31348 1.39172 0.86866 0.78856 0.84423 0.79353 1.20755 1.19447 1.19402 1.22166 0.95186 0.94753 0.86465 1.22781 0.98836 0.99068 0.96098 1.22256 0.99193 0.98060 0.95424 1.22019 1.00754 0.97105 0.94918 1.22327 0.99561 0.98736 0.95518 0.91713 0.91028 0.95003 0.90909 0.92230 0.89672 0.93573 0.88628 0.84642 0.83113 0.82938 0.84695 0.91211 0.91081 0.93402 0.91524 0.90631 0.90264 0.91498 0.89959 0.92567 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.31 71.98 0.67 -4.13 16 2 C -0.09 -3.74 5.33 30.59 0.16 -3.58 16 3 C -0.09 -3.90 0.97 -11.54 -0.01 -3.91 16 4 H 0.07 3.53 3.16 -2.38 -0.01 3.52 16 5 C -0.06 -2.45 3.98 29.85 0.12 -2.33 16 6 C -0.08 -2.93 4.54 -19.87 -0.09 -3.02 16 7 C -0.15 -5.06 9.72 22.27 0.22 -4.84 16 8 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 9 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 10 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 11 C -0.12 -3.38 8.32 22.27 0.19 -3.20 16 12 C 0.50 24.29 3.01 87.66 0.26 24.56 16 13 O -0.62 -32.00 15.30 -3.08 -0.05 -32.05 16 14 N -0.47 -22.58 1.97 -606.94 -1.20 -23.78 16 15 C -0.32 -16.28 6.18 84.04 0.52 -15.76 16 16 H 0.08 4.27 7.26 -2.91 -0.02 4.25 16 17 C 0.06 3.24 4.07 84.92 0.35 3.59 16 18 N -0.88 -47.49 13.96 21.66 0.30 -47.18 16 19 Si 0.88 42.94 25.09 68.60 1.72 44.66 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -13.81 5.44 99.48 0.54 -13.26 16 23 C 0.12 4.93 3.26 46.19 0.15 5.08 16 24 C -0.13 -4.93 6.39 32.01 0.20 -4.72 16 25 C -0.11 -3.16 6.82 31.67 0.22 -2.94 16 26 C -0.11 -3.07 6.80 31.32 0.21 -2.86 16 27 C -0.12 -4.37 6.43 31.32 0.20 -4.17 16 28 H 0.06 1.98 5.87 -2.39 -0.01 1.97 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.03 1.23 6.80 -2.39 -0.02 1.22 16 31 H 0.07 2.67 6.35 -2.39 -0.02 2.66 16 32 H 0.06 2.67 6.99 -2.39 -0.02 2.65 16 33 H 0.08 3.21 6.26 -2.38 -0.01 3.20 16 34 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 35 H 0.10 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.15 2.50 8.06 -2.92 -0.02 2.48 16 39 H 0.14 3.37 7.24 -2.91 -0.02 3.35 16 40 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.07 3.14 7.00 -2.39 -0.02 3.12 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.83 7.01 -2.39 -0.02 2.81 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 48 H 0.06 2.21 6.81 -2.38 -0.02 2.19 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -61.52 367.64 5.58 -55.94 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.76 Total: 33.13 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.04 Total: -30.73 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -0.89 Total: -70.96 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.72 Total: 44.66 kcal Total: -61.52 5.58 -55.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524583865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.893 kcal (2) G-P(sol) polarization free energy of solvation -61.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds