Wall clock time and date at job start Tue Mar 31 2020 11:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.08998 * 109.47509 * 303.03396 * 3 2 1 5 5 C 1.53003 * 109.46776 * 63.03790 * 3 2 1 6 6 C 1.53006 * 109.47040 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46739 * 299.99786 * 6 5 3 8 8 C 1.53003 * 109.47180 * 60.00300 * 7 6 5 9 9 C 1.52999 * 109.46776 * 299.99455 * 8 7 6 10 10 H 1.08999 * 109.46656 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47333 * 300.00155 * 9 8 7 12 12 C 1.46503 * 119.99986 * 102.49110 * 11 9 8 13 13 C 1.34774 * 120.00138 * 282.49276 * 11 9 8 14 14 O 1.21582 * 120.00133 * 4.80316 * 13 11 9 15 15 C 1.47639 * 120.00045 * 184.80743 * 13 11 9 16 16 C 1.40013 * 119.89633 * 314.83176 * 15 13 11 17 17 C 1.36311 * 120.10960 * 179.97438 * 16 15 13 18 18 C 1.40890 * 119.89176 * 0.02867 * 17 16 15 19 19 C 1.41110 * 120.10319 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00249 * 225.24267 * 19 18 17 21 21 C 1.40230 * 119.99996 * 45.24325 * 19 18 17 22 22 N 1.30647 * 120.00056 * 357.84217 * 21 19 18 23 23 Si 1.86799 * 119.99898 * 177.83708 * 21 19 18 24 24 H 1.48500 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46816 * 120.00380 * 23 21 19 26 26 H 1.48498 * 109.47300 * 240.00260 * 23 21 19 27 27 C 1.40888 * 119.79437 * 0.25015 * 18 17 16 28 28 C 1.36317 * 119.88830 * 359.46107 * 27 18 17 29 29 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46723 * 299.99486 * 1 2 3 31 31 H 1.09003 * 109.47199 * 59.99220 * 1 2 3 32 32 H 1.09004 * 109.47123 * 240.00769 * 2 1 3 33 33 H 1.09001 * 109.47716 * 120.00741 * 2 1 3 34 34 H 1.08997 * 109.47202 * 60.00054 * 5 3 2 35 35 H 1.08994 * 109.46744 * 299.99645 * 5 3 2 36 36 H 1.08999 * 109.46919 * 179.97438 * 6 5 3 37 37 H 1.08998 * 109.47327 * 59.99556 * 6 5 3 38 38 H 1.08998 * 109.47023 * 299.99956 * 7 6 5 39 39 H 1.09007 * 109.46822 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.46697 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.47423 * 59.99901 * 8 7 6 42 42 H 1.08996 * 109.46989 * 275.72888 * 12 11 9 43 43 H 1.09004 * 109.46951 * 35.72898 * 12 11 9 44 44 H 1.08999 * 109.47007 * 155.72172 * 12 11 9 45 45 H 1.08001 * 119.94207 * 359.97438 * 16 15 13 46 46 H 1.08010 * 120.05706 * 180.02562 * 17 16 15 47 47 H 0.97004 * 119.99647 * 6.08054 * 22 21 19 48 48 H 1.07994 * 120.05686 * 179.74927 * 27 18 17 49 49 H 1.08001 * 119.94605 * 180.29662 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9718 -0.8615 5 6 1.5933 2.1413 1.2858 6 6 2.1039 3.5836 1.2861 7 6 3.6320 3.5836 1.2100 8 6 4.0787 2.8849 -0.0757 9 6 3.5681 1.4426 -0.0760 10 1 3.8867 0.9446 -0.9918 11 7 4.1148 0.7308 1.0819 12 6 3.2757 0.4941 2.2593 13 6 5.3895 0.2937 1.0641 14 8 6.1123 0.5654 0.1249 15 6 5.9084 -0.5151 2.1850 16 6 5.6446 -0.1292 3.5047 17 6 6.1211 -0.8729 4.5429 18 6 6.8807 -2.0314 4.2862 19 6 7.3766 -2.8044 5.3576 20 1 8.3985 -3.1536 5.3439 21 6 6.5425 -3.1192 6.4400 22 7 5.3193 -2.6616 6.4768 23 14 7.1803 -4.1928 7.8292 24 1 8.5871 -4.5785 7.5508 25 1 7.1179 -3.4381 9.1067 26 1 6.3433 -5.4148 7.9348 27 6 7.1486 -2.4125 2.9566 28 6 6.6628 -1.6656 1.9249 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0004 1.6119 2.1472 35 1 0.5047 2.1408 1.3401 36 1 1.7853 4.0816 2.2019 37 1 1.6972 4.1132 0.4246 38 1 4.0387 3.0540 2.0716 39 1 3.9957 4.6112 1.2098 40 1 5.1674 2.8845 -0.1296 41 1 3.6720 3.4145 -0.9372 42 1 3.2997 1.3719 2.9050 43 1 2.2502 0.3041 1.9424 44 1 3.6528 -0.3700 2.8064 45 1 5.0626 0.7593 3.7005 46 1 5.9167 -0.5747 5.5607 47 1 4.9590 -2.1789 5.7165 48 1 7.7338 -3.2975 2.7550 49 1 6.8636 -1.9595 0.9052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534041555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:28 Heat of formation + Delta-G solvation = 3.288516 kcal Electronic energy + Delta-G solvation = -27633.970644 eV Core-core repulsion = 24140.338097 eV Total energy + Delta-G solvation = -3493.632546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.93361 -38.53629 -37.20666 -34.33015 -34.02666 -33.71572 -31.20608 -29.96528 -29.50686 -28.75640 -26.66999 -25.62014 -23.96299 -22.75084 -21.36134 -21.29920 -20.83931 -19.92759 -18.65741 -18.04132 -16.66036 -15.92349 -15.55794 -15.28585 -14.74955 -14.59079 -14.22268 -14.17281 -13.82255 -13.69528 -13.45989 -13.28391 -12.92465 -12.71635 -12.50129 -12.36857 -12.29890 -12.12835 -12.03817 -11.95636 -11.54996 -11.39485 -11.26319 -11.12391 -11.07807 -10.90991 -10.56111 -10.46064 -10.15326 -9.95686 -9.87330 -9.71742 -9.52262 -9.20684 -8.92427 -8.26207 -7.97461 -7.53854 -7.11613 -4.64023 2.17857 2.69442 3.12866 3.14744 3.30752 3.39299 3.59108 3.98643 4.52311 4.58916 4.63683 4.74223 4.97800 5.10029 5.16827 5.18876 5.22392 5.31137 5.37819 5.42307 5.51519 5.54226 5.60326 5.66027 5.66998 5.68705 5.84649 5.91376 5.92797 5.98459 6.02726 6.03146 6.07067 6.12394 6.23074 6.26375 6.28695 6.35833 6.44419 6.55215 6.71455 6.79939 6.98779 7.25788 7.35339 7.53550 7.65010 7.72363 7.91579 8.02288 8.09871 8.54528 8.78324 8.82902 10.12959 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003529 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.268995 B = 7931.460703 C = 8348.695691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.173 4.173 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.157 3.843 10 H 0.077 0.923 11 N -0.605 5.605 12 C 0.041 3.959 13 C 0.576 3.424 14 O -0.560 6.560 15 C -0.256 4.256 16 C -0.058 4.058 17 C -0.206 4.206 18 C 0.113 3.887 19 C -0.526 4.526 20 H 0.078 0.922 21 C 0.032 3.968 22 N -0.826 5.826 23 Si 1.081 2.919 24 H -0.278 1.278 25 H -0.276 1.276 26 H -0.277 1.277 27 C -0.212 4.212 28 C -0.037 4.037 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.299 0.701 48 H 0.103 0.897 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 7.318 -7.235 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.209 4.209 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.168 4.168 9 C 0.053 3.947 10 H 0.095 0.905 11 N -0.338 5.338 12 C -0.101 4.101 13 C 0.369 3.631 14 O -0.440 6.440 15 C -0.260 4.260 16 C -0.077 4.077 17 C -0.225 4.225 18 C 0.110 3.890 19 C -0.556 4.556 20 H 0.096 0.904 21 C -0.186 4.186 22 N -0.453 5.453 23 Si 0.905 3.095 24 H -0.203 1.203 25 H -0.202 1.202 26 H -0.203 1.203 27 C -0.231 4.231 28 C -0.057 4.057 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.121 0.879 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.176 6.855 -6.250 13.770 hybrid contribution 0.315 0.827 -1.586 1.816 sum -9.861 7.682 -7.836 14.753 Atomic orbital electron populations 1.21814 0.95868 1.01513 1.01705 1.21945 0.95812 0.96344 1.03289 1.21359 0.93962 0.96321 0.99082 0.90345 1.22914 1.00959 0.96734 1.00302 1.21481 0.95761 0.96711 1.01194 1.21501 0.95573 0.99915 0.98587 1.21895 1.01951 0.95290 0.97702 1.20900 0.92274 0.92180 0.89298 0.90534 1.47695 1.12115 1.57494 1.16523 1.23046 0.96947 1.01772 0.88329 1.18657 0.80296 0.77892 0.86250 1.90660 1.57003 1.58627 1.37668 1.18987 1.12836 1.02259 0.91957 1.20605 0.97369 0.97882 0.91865 1.21005 1.07189 0.96687 0.97613 1.17899 0.88897 0.89684 0.92510 1.20663 1.00620 1.30385 1.03945 0.90375 1.27046 0.94287 0.96899 1.00345 1.70349 1.15506 1.26778 1.32706 0.83383 0.75851 0.75881 0.74348 1.20335 1.20194 1.20265 1.20959 1.08042 1.01372 0.92755 1.20353 0.94396 0.93137 0.97767 0.92851 0.92414 0.93070 0.91972 0.89939 0.86908 0.91936 0.92326 0.92654 0.91665 0.92553 0.90984 0.91782 0.92665 0.88284 0.89526 0.88249 0.87235 0.88538 0.87932 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.63 37.16 0.36 -0.97 16 2 C -0.14 -1.44 5.00 -26.73 -0.13 -1.57 16 3 C -0.09 -0.93 1.96 -90.62 -0.18 -1.11 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.17 -1.70 4.33 -26.73 -0.12 -1.82 16 6 C -0.11 -1.13 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.40 5.64 -26.73 -0.15 -1.56 16 8 C -0.13 -1.70 5.47 -26.73 -0.15 -1.85 16 9 C 0.16 2.13 2.16 -67.93 -0.15 1.98 16 10 H 0.08 1.15 7.89 -51.93 -0.41 0.75 16 11 N -0.60 -9.48 2.16 -193.31 -0.42 -9.90 16 12 C 0.04 0.56 5.68 59.85 0.34 0.90 16 13 C 0.58 11.55 7.12 -12.42 -0.09 11.46 16 14 O -0.56 -12.72 16.07 5.29 0.09 -12.63 16 15 C -0.26 -5.52 5.08 -104.73 -0.53 -6.05 16 16 C -0.06 -1.22 7.38 -39.61 -0.29 -1.52 16 17 C -0.21 -4.85 7.54 -39.27 -0.30 -5.15 16 18 C 0.11 2.85 5.23 -106.80 -0.56 2.29 16 19 C -0.53 -13.49 8.97 -37.75 -0.34 -13.83 16 20 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 21 C 0.03 0.80 5.39 -17.31 -0.09 0.71 16 22 N -0.83 -21.32 12.90 55.56 0.72 -20.60 16 23 Si 1.08 21.22 29.94 -169.99 -5.09 16.13 16 24 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.21 -5.01 9.73 -39.27 -0.38 -5.39 16 28 C -0.04 -0.84 9.61 -39.61 -0.38 -1.22 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 6.51 -51.93 -0.34 0.14 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.96 4.92 -51.93 -0.26 0.70 16 34 H 0.11 1.18 2.71 -73.84 -0.20 0.98 16 35 H 0.06 0.55 6.50 -51.93 -0.34 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.88 6.19 -51.93 -0.32 0.56 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.14 7.38 -51.93 -0.38 0.76 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.71 5.34 -51.93 -0.28 0.43 16 43 H 0.10 1.14 2.61 -51.93 -0.14 1.01 16 44 H 0.09 1.39 5.28 -51.93 -0.27 1.11 16 45 H 0.10 1.83 6.20 -52.49 -0.33 1.51 16 46 H 0.11 2.65 6.92 -52.48 -0.36 2.29 16 47 H 0.30 7.72 5.45 -40.82 -0.22 7.50 16 48 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 49 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -27.94 357.24 -9.89 -37.83 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.28 Total: 9.78 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -3.29 Total: -25.99 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.30 Total: -30.50 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.09 Total: 16.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.94 -9.89 -37.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534041555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.120 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds