Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.08998 * 109.47509 * 303.03396 * 3 2 1 5 5 C 1.53003 * 109.46776 * 63.03790 * 3 2 1 6 6 C 1.53006 * 109.47040 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46739 * 299.99786 * 6 5 3 8 8 C 1.53003 * 109.47180 * 60.00300 * 7 6 5 9 9 C 1.52999 * 109.46776 * 299.99455 * 8 7 6 10 10 H 1.08999 * 109.46656 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47333 * 300.00155 * 9 8 7 12 12 C 1.46503 * 119.99986 * 102.49110 * 11 9 8 13 13 C 1.34774 * 120.00138 * 282.49276 * 11 9 8 14 14 O 1.21582 * 120.00133 * 4.80316 * 13 11 9 15 15 C 1.47639 * 120.00045 * 184.80743 * 13 11 9 16 16 C 1.40013 * 119.89633 * 314.83176 * 15 13 11 17 17 C 1.36311 * 120.10960 * 179.97438 * 16 15 13 18 18 C 1.40890 * 119.89176 * 0.02867 * 17 16 15 19 19 C 1.41110 * 120.10319 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00249 * 225.24267 * 19 18 17 21 21 C 1.40230 * 119.99996 * 45.24325 * 19 18 17 22 22 N 1.30647 * 120.00056 * 357.84217 * 21 19 18 23 23 Si 1.86799 * 119.99898 * 177.83708 * 21 19 18 24 24 H 1.48500 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46816 * 120.00380 * 23 21 19 26 26 H 1.48498 * 109.47300 * 240.00260 * 23 21 19 27 27 C 1.40888 * 119.79437 * 0.25015 * 18 17 16 28 28 C 1.36317 * 119.88830 * 359.46107 * 27 18 17 29 29 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46723 * 299.99486 * 1 2 3 31 31 H 1.09003 * 109.47199 * 59.99220 * 1 2 3 32 32 H 1.09004 * 109.47123 * 240.00769 * 2 1 3 33 33 H 1.09001 * 109.47716 * 120.00741 * 2 1 3 34 34 H 1.08997 * 109.47202 * 60.00054 * 5 3 2 35 35 H 1.08994 * 109.46744 * 299.99645 * 5 3 2 36 36 H 1.08999 * 109.46919 * 179.97438 * 6 5 3 37 37 H 1.08998 * 109.47327 * 59.99556 * 6 5 3 38 38 H 1.08998 * 109.47023 * 299.99956 * 7 6 5 39 39 H 1.09007 * 109.46822 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.46697 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.47423 * 59.99901 * 8 7 6 42 42 H 1.08996 * 109.46989 * 275.72888 * 12 11 9 43 43 H 1.09004 * 109.46951 * 35.72898 * 12 11 9 44 44 H 1.08999 * 109.47007 * 155.72172 * 12 11 9 45 45 H 1.08001 * 119.94207 * 359.97438 * 16 15 13 46 46 H 1.08010 * 120.05706 * 180.02562 * 17 16 15 47 47 H 0.97004 * 119.99647 * 6.08054 * 22 21 19 48 48 H 1.07994 * 120.05686 * 179.74927 * 27 18 17 49 49 H 1.08001 * 119.94605 * 180.29662 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9718 -0.8615 5 6 1.5933 2.1413 1.2858 6 6 2.1039 3.5836 1.2861 7 6 3.6320 3.5836 1.2100 8 6 4.0787 2.8849 -0.0757 9 6 3.5681 1.4426 -0.0760 10 1 3.8867 0.9446 -0.9918 11 7 4.1148 0.7308 1.0819 12 6 3.2757 0.4941 2.2593 13 6 5.3895 0.2937 1.0641 14 8 6.1123 0.5654 0.1249 15 6 5.9084 -0.5151 2.1850 16 6 5.6446 -0.1292 3.5047 17 6 6.1211 -0.8729 4.5429 18 6 6.8807 -2.0314 4.2862 19 6 7.3766 -2.8044 5.3576 20 1 8.3985 -3.1536 5.3439 21 6 6.5425 -3.1192 6.4400 22 7 5.3193 -2.6616 6.4768 23 14 7.1803 -4.1928 7.8292 24 1 8.5871 -4.5785 7.5508 25 1 7.1179 -3.4381 9.1067 26 1 6.3433 -5.4148 7.9348 27 6 7.1486 -2.4125 2.9566 28 6 6.6628 -1.6656 1.9249 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0004 1.6119 2.1472 35 1 0.5047 2.1408 1.3401 36 1 1.7853 4.0816 2.2019 37 1 1.6972 4.1132 0.4246 38 1 4.0387 3.0540 2.0716 39 1 3.9957 4.6112 1.2098 40 1 5.1674 2.8845 -0.1296 41 1 3.6720 3.4145 -0.9372 42 1 3.2997 1.3719 2.9050 43 1 2.2502 0.3041 1.9424 44 1 3.6528 -0.3700 2.8064 45 1 5.0626 0.7593 3.7005 46 1 5.9167 -0.5747 5.5607 47 1 4.9590 -2.1789 5.7165 48 1 7.7338 -3.2975 2.7550 49 1 6.8636 -1.9595 0.9052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534041555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = -8.699873 kcal Electronic energy + Delta-G solvation = -27634.490499 eV Core-core repulsion = 24140.338097 eV Total energy + Delta-G solvation = -3494.152402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14770 -40.10470 -38.88008 -35.87148 -35.25083 -34.98566 -32.47820 -31.54925 -31.22938 -29.73524 -27.97788 -27.31027 -24.80913 -24.21443 -23.14663 -22.65472 -21.75778 -21.14509 -20.06096 -19.89208 -18.13407 -17.07733 -16.95460 -16.59431 -16.24963 -16.05712 -15.63464 -15.35619 -15.21905 -14.91058 -14.81095 -14.50649 -14.23976 -14.14306 -14.10133 -13.75338 -13.49596 -13.22348 -13.18286 -13.07671 -12.96281 -12.74514 -12.60161 -12.40016 -12.21483 -11.96542 -11.94438 -11.69251 -11.46305 -11.35348 -11.09292 -11.01182 -10.92105 -10.84934 -10.32331 -9.80189 -9.62838 -9.38421 -9.02100 -6.60326 0.37584 0.83348 1.53651 1.58474 1.80961 1.87336 2.10215 2.36141 2.76207 3.33988 3.54286 3.73074 3.83374 3.92808 4.03549 4.10775 4.18698 4.20199 4.26490 4.31292 4.42281 4.52737 4.54526 4.56560 4.65092 4.69405 4.72304 4.73499 4.85390 4.87803 4.92741 4.94675 5.00079 5.07852 5.16973 5.21660 5.26545 5.31759 5.36037 5.38900 5.39402 5.44553 5.52421 5.57677 5.67479 5.72107 5.80310 5.83141 6.13439 6.20716 6.41693 6.64404 6.89862 7.24878 8.20528 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003529 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.268995 B = 7931.460703 C = 8348.695691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.079 4.079 4 H 0.097 0.903 5 C -0.171 4.171 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.127 4.127 9 C 0.151 3.849 10 H 0.058 0.942 11 N -0.590 5.590 12 C 0.037 3.963 13 C 0.572 3.428 14 O -0.592 6.592 15 C -0.251 4.251 16 C -0.045 4.045 17 C -0.213 4.213 18 C 0.087 3.913 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.001 4.001 22 N -0.849 5.849 23 Si 1.129 2.871 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.221 4.221 28 C -0.046 4.046 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.063 0.937 45 H 0.128 0.872 46 H 0.100 0.900 47 H 0.288 0.712 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 8.564 -7.454 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.098 4.098 4 H 0.115 0.885 5 C -0.207 4.207 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.165 4.165 9 C 0.049 3.951 10 H 0.076 0.924 11 N -0.321 5.321 12 C -0.103 4.103 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.255 4.255 16 C -0.064 4.064 17 C -0.233 4.233 18 C 0.085 3.915 19 C -0.591 4.591 20 H 0.091 0.909 21 C -0.214 4.214 22 N -0.476 5.476 23 Si 0.946 3.054 24 H -0.192 1.192 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.240 4.240 28 C -0.065 4.065 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.560 8.125 -6.483 16.303 hybrid contribution 0.997 0.554 -1.726 2.069 sum -11.563 8.679 -8.210 16.626 Atomic orbital electron populations 1.21781 0.94023 1.01938 1.02702 1.21919 0.97383 0.95976 1.02125 1.21342 0.91121 0.96769 1.00544 0.88465 1.22877 1.02286 0.96486 0.99061 1.21453 0.93733 0.96904 1.02482 1.21494 0.97398 0.99782 0.96792 1.21850 0.99849 0.95255 0.99552 1.21127 0.94587 0.91986 0.87436 0.92371 1.47661 1.10719 1.56007 1.17698 1.23296 0.97914 1.01465 0.87631 1.18465 0.81654 0.78139 0.85381 1.90646 1.58268 1.60063 1.38449 1.19313 1.11575 1.01703 0.92895 1.20784 0.96498 0.98137 0.90992 1.20980 1.07680 0.96843 0.97788 1.18200 0.89820 0.90396 0.93125 1.20839 1.00843 1.32026 1.05368 0.90917 1.28395 0.93765 0.97008 1.02213 1.70448 1.16281 1.28372 1.32539 0.82814 0.75978 0.74631 0.71936 1.19153 1.19192 1.19362 1.21086 1.08374 1.01920 0.92669 1.20541 0.94427 0.93502 0.98009 0.92844 0.91391 0.92038 0.92964 0.91334 0.87786 0.89736 0.91168 0.91227 0.93612 0.91856 0.94434 0.89568 0.91034 0.85386 0.91866 0.85455 0.88201 0.89695 0.87404 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.63 71.98 0.69 -1.39 16 2 C -0.14 -2.55 5.00 30.59 0.15 -2.39 16 3 C -0.08 -1.43 1.96 -10.79 -0.02 -1.45 16 4 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.17 -2.69 4.33 30.60 0.13 -2.56 16 6 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 7 C -0.12 -2.51 5.64 30.60 0.17 -2.34 16 8 C -0.13 -3.14 5.47 30.59 0.17 -2.97 16 9 C 0.15 3.90 2.16 44.99 0.10 4.00 16 10 H 0.06 1.73 7.89 -2.39 -0.02 1.72 16 11 N -0.59 -18.03 2.16 -883.77 -1.91 -19.94 16 12 C 0.04 0.97 5.68 127.77 0.73 1.70 16 13 C 0.57 23.00 7.12 86.73 0.62 23.62 16 14 O -0.59 -27.30 16.07 -3.97 -0.06 -27.36 16 15 C -0.25 -10.89 5.08 -19.93 -0.10 -11.00 16 16 C -0.05 -1.92 7.38 22.25 0.16 -1.75 16 17 C -0.21 -10.34 7.54 22.47 0.17 -10.17 16 18 C 0.09 4.53 5.23 -21.28 -0.11 4.42 16 19 C -0.56 -29.68 8.97 23.46 0.21 -29.47 16 20 H 0.07 3.79 7.85 -2.91 -0.02 3.76 16 21 C 0.00 -0.07 5.39 85.35 0.46 0.39 16 22 N -0.85 -44.69 12.90 21.87 0.28 -44.41 16 23 Si 1.13 42.76 29.94 68.60 2.05 44.82 16 24 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 25 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 27 C -0.22 -10.77 9.73 22.47 0.22 -10.55 16 28 C -0.05 -2.09 9.61 22.25 0.21 -1.88 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.83 6.51 -2.39 -0.02 0.82 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.46 4.92 -2.39 -0.01 1.45 16 34 H 0.10 1.82 2.71 -22.97 -0.06 1.76 16 35 H 0.08 1.05 6.50 -2.39 -0.02 1.03 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.15 6.19 -2.39 -0.01 1.14 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.04 1.19 7.38 -2.38 -0.02 1.17 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.68 5.34 -2.39 -0.01 1.66 16 43 H 0.13 2.66 2.61 -2.38 -0.01 2.65 16 44 H 0.06 1.98 5.28 -2.39 -0.01 1.96 16 45 H 0.13 4.59 6.20 -2.91 -0.02 4.57 16 46 H 0.10 4.99 6.92 -2.91 -0.02 4.97 16 47 H 0.29 15.36 5.45 -92.71 -0.51 14.86 16 48 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 49 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -62.57 357.24 5.67 -56.90 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 1.16 Total: 35.29 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.14 Total: -45.30 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.63 Total: -64.35 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.06 Total: -27.36 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.05 Total: 44.82 kcal Total: -62.57 5.67 -56.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534041555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.197 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds