Wall clock time and date at job start Tue Mar 31 2020 11:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 H 1.08998 * 109.46673 * 55.00259 * 3 2 1 5 5 C 1.52996 * 109.47330 * 294.99767 * 3 2 1 6 6 C 1.53005 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46830 * 60.00299 * 6 5 3 8 8 C 1.53002 * 109.47281 * 299.99893 * 7 6 5 9 9 C 1.53001 * 109.46925 * 59.99970 * 8 7 6 10 10 H 1.09007 * 109.46916 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47499 * 60.00183 * 9 8 7 12 12 C 1.46502 * 119.99574 * 302.44917 * 11 9 8 13 13 C 1.34773 * 119.99852 * 122.44341 * 11 9 8 14 14 O 1.21584 * 120.00091 * 6.85946 * 13 11 9 15 15 C 1.47641 * 119.99934 * 186.85335 * 13 11 9 16 16 C 1.40016 * 119.89322 * 355.65222 * 15 13 11 17 17 C 1.36322 * 120.10681 * 179.71570 * 16 15 13 18 18 C 1.40887 * 119.88865 * 0.53505 * 17 16 15 19 19 C 1.41107 * 120.10207 * 179.76246 * 18 17 16 20 20 H 1.07995 * 120.00228 * 214.92480 * 19 18 17 21 21 C 1.40231 * 119.99917 * 34.93035 * 19 18 17 22 22 N 1.30642 * 119.99985 * 5.02873 * 21 19 18 23 23 Si 1.86801 * 119.99698 * 185.03652 * 21 19 18 24 24 H 1.48494 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47059 * 120.00004 * 23 21 19 26 26 H 1.48500 * 109.46980 * 239.99639 * 23 21 19 27 27 C 1.40888 * 119.79385 * 359.73724 * 18 17 16 28 28 C 1.36319 * 119.89194 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47141 * 299.99628 * 1 2 3 30 30 H 1.08994 * 109.46980 * 59.99967 * 1 2 3 31 31 H 1.08996 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47141 * 240.00371 * 2 1 3 33 33 H 1.08994 * 109.46980 * 120.00033 * 2 1 3 34 34 H 1.08998 * 109.47535 * 300.00442 * 5 3 2 35 35 H 1.09009 * 109.46606 * 60.00410 * 5 3 2 36 36 H 1.08999 * 109.46499 * 180.02562 * 6 5 3 37 37 H 1.08998 * 109.46984 * 300.00481 * 6 5 3 38 38 H 1.09004 * 109.47082 * 59.99579 * 7 6 5 39 39 H 1.08996 * 109.46720 * 179.97438 * 7 6 5 40 40 H 1.08996 * 109.46636 * 300.00485 * 8 7 6 41 41 H 1.08995 * 109.46853 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47204 * 354.84336 * 12 11 9 43 43 H 1.08992 * 109.46794 * 234.83695 * 12 11 9 44 44 H 1.09002 * 109.46871 * 114.84135 * 12 11 9 45 45 H 1.08004 * 119.94609 * 359.97438 * 16 15 13 46 46 H 1.07996 * 120.05326 * 180.25099 * 17 16 15 47 47 H 0.97001 * 119.99845 * 180.02562 * 22 21 19 48 48 H 1.08005 * 120.05129 * 179.97438 * 27 18 17 49 49 H 1.07996 * 119.94411 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 2.1447 3.5694 -1.3070 7 6 3.6695 3.5717 -1.1809 8 6 4.0743 2.8876 0.1264 9 6 3.5648 1.4449 0.1260 10 1 3.8528 0.9577 1.0577 11 7 4.1494 0.7207 -1.0054 12 6 3.9514 1.2127 -2.3710 13 6 4.8695 -0.3979 -0.7898 14 8 4.9305 -0.8760 0.3264 15 6 5.5842 -1.0430 -1.9092 16 6 5.4391 -0.5443 -3.2095 17 6 6.1015 -1.1330 -4.2454 18 6 6.9241 -2.2518 -4.0076 19 6 7.6079 -2.8676 -5.0773 20 1 7.7535 -3.9377 -5.0805 21 6 8.0984 -2.0902 -6.1363 22 7 8.0098 -0.7877 -6.0861 23 14 8.8783 -2.9169 -7.6187 24 1 8.8575 -4.3899 -7.4319 25 1 8.1151 -2.5618 -8.8420 26 1 10.2829 -2.4562 -7.7604 27 6 7.0624 -2.7534 -2.6983 28 6 6.3998 -2.1550 -1.6681 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 1.8560 4.0567 -2.2382 37 1 1.7097 4.1080 -0.4651 38 1 4.1045 3.0329 -2.0227 39 1 4.0325 4.5995 -1.1811 40 1 3.6393 3.4263 0.9681 41 1 5.1606 2.8889 0.2159 42 1 3.2740 2.0665 -2.3550 43 1 3.5226 0.4201 -2.9841 44 1 4.9104 1.5176 -2.7900 45 1 4.8048 0.3106 -3.3915 46 1 5.9922 -0.7452 -5.2474 47 1 8.3488 -0.2500 -6.8188 48 1 7.6916 -3.6110 -2.5113 49 1 6.5049 -2.5391 -0.6642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534041558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:41 Heat of formation + Delta-G solvation = 44.536927 kcal Electronic energy + Delta-G solvation = -27590.798021 eV Core-core repulsion = 24098.954140 eV Total energy + Delta-G solvation = -3491.843881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.96857 -38.33480 -36.88450 -34.53160 -33.86084 -33.55376 -31.43487 -29.69521 -29.47985 -28.84093 -26.79641 -25.71223 -23.86260 -22.65420 -21.53092 -20.97598 -20.54909 -19.79554 -18.77139 -17.45930 -16.49402 -15.83079 -15.57119 -15.30338 -15.07315 -14.80077 -14.26175 -13.90045 -13.51741 -13.37672 -13.24764 -13.08397 -12.94237 -12.71587 -12.45349 -12.34592 -12.12487 -11.90393 -11.80968 -11.51154 -11.47542 -11.31751 -11.24965 -11.12063 -10.97145 -10.77301 -10.61371 -10.55751 -10.10565 -9.97006 -9.87977 -9.74333 -9.39984 -9.13030 -8.55102 -8.11661 -7.63460 -7.36680 -6.87189 -4.56468 2.26008 2.95183 2.99826 3.04646 3.06016 3.55369 3.81576 3.91425 4.61467 4.62508 4.71922 4.77988 5.05874 5.12400 5.24972 5.32205 5.34709 5.39556 5.44059 5.51348 5.53833 5.62932 5.66859 5.70451 5.77975 5.81452 5.90392 5.97501 5.99953 6.08423 6.09644 6.15991 6.21768 6.25113 6.32183 6.34405 6.35529 6.43699 6.52154 6.81958 6.92775 7.00310 7.14949 7.18558 7.52978 7.65343 7.82212 7.93600 8.12710 8.16973 8.48331 8.71470 8.81672 9.06724 10.06433 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.003467 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.979947 B = 8075.231983 C = 8546.802617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.148 4.148 6 C -0.120 4.120 7 C -0.158 4.158 8 C -0.125 4.125 9 C 0.145 3.855 10 H 0.096 0.904 11 N -0.607 5.607 12 C 0.025 3.975 13 C 0.572 3.428 14 O -0.574 6.574 15 C -0.267 4.267 16 C -0.129 4.129 17 C -0.166 4.166 18 C 0.130 3.870 19 C -0.456 4.456 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.792 5.792 23 Si 0.915 3.085 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.229 4.229 28 C -0.032 4.032 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.151 0.849 46 H 0.118 0.882 47 H 0.282 0.718 48 H 0.097 0.903 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 9.092 4.374 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.091 0.909 5 C -0.185 4.185 6 C -0.157 4.157 7 C -0.194 4.194 8 C -0.163 4.163 9 C 0.042 3.958 10 H 0.114 0.886 11 N -0.340 5.340 12 C -0.116 4.116 13 C 0.368 3.632 14 O -0.456 6.456 15 C -0.271 4.271 16 C -0.147 4.147 17 C -0.186 4.186 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.099 0.901 21 C -0.145 4.145 22 N -0.418 5.418 23 Si 0.739 3.261 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.249 4.249 28 C -0.051 4.051 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.167 0.833 46 H 0.136 0.864 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.918 9.054 4.826 14.983 hybrid contribution 0.604 -0.278 -0.712 0.974 sum -10.315 8.776 4.114 14.154 Atomic orbital electron populations 1.21811 0.96348 1.01267 1.01308 1.21484 0.94965 0.96101 1.02836 1.21455 0.95168 0.96329 0.98015 0.90930 1.22306 1.00874 0.95913 0.99365 1.21546 0.95776 0.96774 1.01635 1.22329 0.96123 1.00980 0.99989 1.21830 1.01249 0.95372 0.97889 1.20962 0.91780 0.91745 0.91354 0.88554 1.47492 1.53776 1.26771 1.05973 1.23724 1.02472 1.01410 0.83970 1.18659 0.77083 0.78751 0.88690 1.90615 1.64959 1.64274 1.25749 1.18964 1.11288 1.04147 0.92687 1.22780 0.99404 1.00059 0.92441 1.21077 0.99128 1.00043 0.98324 1.17875 0.87410 0.90622 0.91426 1.19777 1.30600 0.95544 1.02611 0.90083 1.25985 0.94811 0.94710 0.99027 1.69700 1.35271 1.05519 1.31273 0.86144 0.79044 0.80645 0.80247 1.18341 1.19645 1.19805 1.20841 1.06525 1.04577 0.92935 1.20398 0.93728 0.93321 0.97653 0.93203 0.92740 0.93086 0.91688 0.91927 0.88912 0.91966 0.92010 0.92152 0.88419 0.92312 0.91456 0.91623 0.86350 0.90929 0.90913 0.83297 0.86413 0.90690 0.88471 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.12 -1.50 5.17 -26.73 -0.14 -1.64 16 3 C -0.09 -1.04 2.01 -90.62 -0.18 -1.23 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.48 4.58 -26.73 -0.12 -1.61 16 6 C -0.12 -1.08 5.57 -26.73 -0.15 -1.23 16 7 C -0.16 -1.61 5.54 -26.73 -0.15 -1.76 16 8 C -0.13 -1.47 5.62 -26.73 -0.15 -1.62 16 9 C 0.15 2.02 2.59 -67.93 -0.18 1.85 16 10 H 0.10 1.56 6.94 -51.92 -0.36 1.20 16 11 N -0.61 -9.86 2.09 -215.78 -0.45 -10.31 16 12 C 0.02 0.35 4.64 59.85 0.28 0.62 16 13 C 0.57 12.00 7.63 -12.42 -0.09 11.91 16 14 O -0.57 -13.46 15.69 5.29 0.08 -13.38 16 15 C -0.27 -6.08 5.89 -104.73 -0.62 -6.70 16 16 C -0.13 -2.81 7.96 -39.61 -0.32 -3.13 16 17 C -0.17 -4.07 8.56 -39.27 -0.34 -4.40 16 18 C 0.13 3.35 5.50 -106.80 -0.59 2.76 16 19 C -0.46 -11.62 9.03 -37.75 -0.34 -11.96 16 20 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 21 C 0.07 1.74 5.32 -17.31 -0.09 1.65 16 22 N -0.79 -19.43 10.97 55.56 0.61 -18.82 16 23 Si 0.91 17.88 29.56 -169.99 -5.03 12.85 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 C -0.23 -5.66 9.73 -39.27 -0.38 -6.04 16 28 C -0.03 -0.76 9.52 -39.61 -0.38 -1.14 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.97 7.77 -51.93 -0.40 0.57 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.00 4.25 -51.93 -0.22 0.78 16 35 H 0.06 0.57 6.57 -51.92 -0.34 0.23 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.07 3.85 -51.93 -0.20 0.87 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.12 1.31 1.79 -51.93 -0.09 1.22 16 43 H 0.07 1.05 6.26 -51.93 -0.33 0.72 16 44 H 0.07 1.08 6.08 -51.93 -0.32 0.76 16 45 H 0.15 2.68 2.35 -99.24 -0.23 2.45 16 46 H 0.12 2.92 6.49 -52.49 -0.34 2.58 16 47 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 48 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 49 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -28.33 358.19 -10.31 -38.64 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.35 Total: 10.48 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.57 Total: -24.86 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 0.16 Total: -29.13 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.33 -10.31 -38.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534041558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.177 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds