Wall clock time and date at job start Tue Mar 31 2020 11:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 H 1.08998 * 109.46673 * 55.00259 * 3 2 1 5 5 C 1.52996 * 109.47330 * 294.99767 * 3 2 1 6 6 C 1.53005 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46830 * 60.00299 * 6 5 3 8 8 C 1.53002 * 109.47281 * 299.99893 * 7 6 5 9 9 C 1.53001 * 109.46925 * 59.99970 * 8 7 6 10 10 H 1.09007 * 109.46916 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47499 * 60.00183 * 9 8 7 12 12 C 1.46502 * 119.99574 * 302.44917 * 11 9 8 13 13 C 1.34773 * 119.99852 * 122.44341 * 11 9 8 14 14 O 1.21584 * 120.00091 * 6.85946 * 13 11 9 15 15 C 1.47641 * 119.99934 * 186.85335 * 13 11 9 16 16 C 1.40016 * 119.89322 * 355.65222 * 15 13 11 17 17 C 1.36322 * 120.10681 * 179.71570 * 16 15 13 18 18 C 1.40887 * 119.88865 * 0.53505 * 17 16 15 19 19 C 1.41107 * 120.10207 * 179.76246 * 18 17 16 20 20 H 1.07995 * 120.00228 * 214.92480 * 19 18 17 21 21 C 1.40231 * 119.99917 * 34.93035 * 19 18 17 22 22 N 1.30642 * 119.99985 * 5.02873 * 21 19 18 23 23 Si 1.86801 * 119.99698 * 185.03652 * 21 19 18 24 24 H 1.48494 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47059 * 120.00004 * 23 21 19 26 26 H 1.48500 * 109.46980 * 239.99639 * 23 21 19 27 27 C 1.40888 * 119.79385 * 359.73724 * 18 17 16 28 28 C 1.36319 * 119.89194 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47141 * 299.99628 * 1 2 3 30 30 H 1.08994 * 109.46980 * 59.99967 * 1 2 3 31 31 H 1.08996 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47141 * 240.00371 * 2 1 3 33 33 H 1.08994 * 109.46980 * 120.00033 * 2 1 3 34 34 H 1.08998 * 109.47535 * 300.00442 * 5 3 2 35 35 H 1.09009 * 109.46606 * 60.00410 * 5 3 2 36 36 H 1.08999 * 109.46499 * 180.02562 * 6 5 3 37 37 H 1.08998 * 109.46984 * 300.00481 * 6 5 3 38 38 H 1.09004 * 109.47082 * 59.99579 * 7 6 5 39 39 H 1.08996 * 109.46720 * 179.97438 * 7 6 5 40 40 H 1.08996 * 109.46636 * 300.00485 * 8 7 6 41 41 H 1.08995 * 109.46853 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47204 * 354.84336 * 12 11 9 43 43 H 1.08992 * 109.46794 * 234.83695 * 12 11 9 44 44 H 1.09002 * 109.46871 * 114.84135 * 12 11 9 45 45 H 1.08004 * 119.94609 * 359.97438 * 16 15 13 46 46 H 1.07996 * 120.05326 * 180.25099 * 17 16 15 47 47 H 0.97001 * 119.99845 * 180.02562 * 22 21 19 48 48 H 1.08005 * 120.05129 * 179.97438 * 27 18 17 49 49 H 1.07996 * 119.94411 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 2.1447 3.5694 -1.3070 7 6 3.6695 3.5717 -1.1809 8 6 4.0743 2.8876 0.1264 9 6 3.5648 1.4449 0.1260 10 1 3.8528 0.9577 1.0577 11 7 4.1494 0.7207 -1.0054 12 6 3.9514 1.2127 -2.3710 13 6 4.8695 -0.3979 -0.7898 14 8 4.9305 -0.8760 0.3264 15 6 5.5842 -1.0430 -1.9092 16 6 5.4391 -0.5443 -3.2095 17 6 6.1015 -1.1330 -4.2454 18 6 6.9241 -2.2518 -4.0076 19 6 7.6079 -2.8676 -5.0773 20 1 7.7535 -3.9377 -5.0805 21 6 8.0984 -2.0902 -6.1363 22 7 8.0098 -0.7877 -6.0861 23 14 8.8783 -2.9169 -7.6187 24 1 8.8575 -4.3899 -7.4319 25 1 8.1151 -2.5618 -8.8420 26 1 10.2829 -2.4562 -7.7604 27 6 7.0624 -2.7534 -2.6983 28 6 6.3998 -2.1550 -1.6681 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 1.8560 4.0567 -2.2382 37 1 1.7097 4.1080 -0.4651 38 1 4.1045 3.0329 -2.0227 39 1 4.0325 4.5995 -1.1811 40 1 3.6393 3.4263 0.9681 41 1 5.1606 2.8889 0.2159 42 1 3.2740 2.0665 -2.3550 43 1 3.5226 0.4201 -2.9841 44 1 4.9104 1.5176 -2.7900 45 1 4.8048 0.3106 -3.3915 46 1 5.9922 -0.7452 -5.2474 47 1 8.3488 -0.2500 -6.8188 48 1 7.6916 -3.6110 -2.5113 49 1 6.5049 -2.5391 -0.6642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534041558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:40 Heat of formation + Delta-G solvation = 31.789030 kcal Electronic energy + Delta-G solvation = -27591.350812 eV Core-core repulsion = 24098.954140 eV Total energy + Delta-G solvation = -3492.396671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19499 -39.88727 -38.63623 -35.94891 -35.35150 -34.78393 -32.72356 -31.45039 -31.03904 -29.85806 -28.20883 -27.38110 -24.77653 -24.08623 -23.02759 -22.48725 -21.53987 -21.18136 -20.15149 -19.30486 -18.04501 -17.29087 -17.02604 -16.66060 -16.37115 -16.02285 -15.44662 -15.16149 -15.04664 -14.76573 -14.69973 -14.48247 -14.23376 -14.05573 -13.70557 -13.59515 -13.44175 -13.29628 -13.07545 -12.88057 -12.82726 -12.68142 -12.45487 -12.34594 -12.29276 -12.23688 -11.89613 -11.68748 -11.60449 -11.20713 -11.10877 -11.04473 -10.93416 -10.73432 -9.93952 -9.59482 -9.46729 -9.21385 -8.67687 -6.49235 0.44322 1.13268 1.39805 1.41185 1.54302 2.14047 2.18768 2.21267 2.81870 3.62902 3.65297 3.80414 3.87744 4.05396 4.14212 4.20950 4.21851 4.35905 4.38912 4.41807 4.48561 4.50436 4.55758 4.65271 4.71492 4.72539 4.76878 4.84073 4.87038 4.95909 5.04175 5.07901 5.11251 5.16070 5.17860 5.22835 5.30275 5.31861 5.33681 5.39612 5.42952 5.56088 5.57639 5.63598 5.75197 5.87206 5.96763 6.03670 6.26842 6.55387 6.58515 6.81874 6.91610 7.41711 8.28747 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.003467 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.979947 B = 8075.231983 C = 8546.802617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.083 4.083 4 H 0.093 0.907 5 C -0.147 4.147 6 C -0.115 4.115 7 C -0.157 4.157 8 C -0.121 4.121 9 C 0.139 3.861 10 H 0.066 0.934 11 N -0.593 5.593 12 C 0.017 3.983 13 C 0.567 3.433 14 O -0.607 6.607 15 C -0.276 4.276 16 C -0.120 4.120 17 C -0.184 4.184 18 C 0.102 3.898 19 C -0.490 4.490 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.818 5.818 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.259 1.259 26 H -0.266 1.266 27 C -0.245 4.245 28 C -0.046 4.046 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.159 0.841 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.191 0.809 46 H 0.112 0.888 47 H 0.292 0.708 48 H 0.100 0.900 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 11.704 3.285 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.102 4.102 4 H 0.111 0.889 5 C -0.183 4.183 6 C -0.152 4.152 7 C -0.194 4.194 8 C -0.159 4.159 9 C 0.036 3.964 10 H 0.085 0.915 11 N -0.324 5.324 12 C -0.123 4.123 13 C 0.362 3.638 14 O -0.492 6.492 15 C -0.280 4.280 16 C -0.137 4.137 17 C -0.203 4.203 18 C 0.099 3.901 19 C -0.519 4.519 20 H 0.096 0.904 21 C -0.180 4.180 22 N -0.443 5.443 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.183 1.183 26 H -0.191 1.191 27 C -0.264 4.264 28 C -0.065 4.065 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.176 0.824 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.207 0.793 46 H 0.130 0.870 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.795 11.705 3.741 17.740 hybrid contribution 1.124 -1.026 -0.238 1.540 sum -11.671 10.680 3.504 16.203 Atomic orbital electron populations 1.21761 0.94010 1.01586 1.02710 1.21448 0.97003 0.96640 1.00263 1.21423 0.92887 0.95778 1.00111 0.88904 1.22292 1.02144 0.96413 0.97490 1.21544 0.94319 0.95955 1.03373 1.22318 0.97395 1.01471 0.98211 1.21806 1.00181 0.93877 1.00051 1.21200 0.93704 0.92515 0.89017 0.91539 1.47454 1.51907 1.25148 1.07860 1.23930 1.03174 1.02763 0.82420 1.18486 0.77713 0.80039 0.87589 1.90590 1.66345 1.65601 1.26628 1.19325 1.10897 1.03838 0.93967 1.23321 0.98703 1.00503 0.91204 1.21127 0.99975 1.00474 0.98741 1.18227 0.88257 0.91686 0.91956 1.20002 1.32164 0.95761 1.03989 0.90392 1.26807 0.94737 0.95186 1.01270 1.69731 1.35522 1.06669 1.32422 0.85049 0.78219 0.79294 0.76513 1.18437 1.18347 1.19127 1.20961 1.07227 1.05124 0.93097 1.20540 0.94377 0.94119 0.97467 0.91750 0.91243 0.93462 0.94315 0.94567 0.89853 0.90052 0.90040 0.90746 0.89415 0.90711 0.89237 0.93505 0.82419 0.91081 0.91342 0.79337 0.86961 0.89669 0.88149 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.67 71.98 0.70 -1.99 16 2 C -0.12 -2.92 5.17 30.60 0.16 -2.76 16 3 C -0.08 -1.73 2.01 -10.79 -0.02 -1.75 16 4 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 5 C -0.15 -2.37 4.58 30.59 0.14 -2.23 16 6 C -0.11 -1.49 5.57 30.60 0.17 -1.32 16 7 C -0.16 -2.64 5.54 30.60 0.17 -2.47 16 8 C -0.12 -2.58 5.62 30.60 0.17 -2.41 16 9 C 0.14 3.74 2.59 44.99 0.12 3.86 16 10 H 0.07 2.21 6.94 -2.38 -0.02 2.20 16 11 N -0.59 -19.15 2.09 -954.86 -2.00 -21.15 16 12 C 0.02 0.43 4.64 127.77 0.59 1.03 16 13 C 0.57 24.52 7.63 86.73 0.66 25.18 16 14 O -0.61 -29.78 15.69 -3.98 -0.06 -29.84 16 15 C -0.28 -13.01 5.89 -19.93 -0.12 -13.12 16 16 C -0.12 -5.31 7.96 22.25 0.18 -5.14 16 17 C -0.18 -9.23 8.56 22.47 0.19 -9.03 16 18 C 0.10 5.46 5.50 -21.28 -0.12 5.35 16 19 C -0.49 -25.81 9.03 23.46 0.21 -25.60 16 20 H 0.08 3.99 7.85 -2.91 -0.02 3.97 16 21 C 0.04 1.73 5.32 85.35 0.45 2.19 16 22 N -0.82 -40.35 10.97 21.87 0.24 -40.11 16 23 Si 0.99 36.47 29.56 68.60 2.03 38.50 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 27 C -0.24 -12.71 9.73 22.47 0.22 -12.49 16 28 C -0.05 -2.30 9.52 22.25 0.21 -2.09 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.10 6.56 -2.39 -0.02 1.09 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.04 1.16 7.77 -2.39 -0.02 1.14 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.51 4.25 -2.39 -0.01 1.50 16 35 H 0.08 1.09 6.57 -2.38 -0.02 1.07 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.64 3.85 -2.39 -0.01 1.63 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.16 3.02 1.79 -2.39 0.00 3.02 16 43 H 0.07 1.95 6.26 -2.39 -0.01 1.93 16 44 H 0.07 1.93 6.08 -2.39 -0.01 1.91 16 45 H 0.19 6.67 2.35 -46.83 -0.11 6.56 16 46 H 0.11 5.69 6.49 -2.91 -0.02 5.68 16 47 H 0.29 12.85 8.29 -92.71 -0.77 12.08 16 48 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 49 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 Total: -1.00 -65.00 358.19 5.15 -59.84 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.86 Total: 37.57 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.09 Total: -44.81 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.76 Total: -61.25 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.06 Total: -29.84 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -65.00 5.15 -59.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534041558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.630 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds