Wall clock time and date at job start Tue Mar 31 2020 12:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 O 1.42898 * 109.47187 * 134.72178 * 3 2 1 5 5 C 1.35894 * 117.00083 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05834 * 359.97438 * 5 4 3 7 7 C 1.38116 * 119.94781 * 180.02562 * 6 5 4 8 8 C 1.38290 * 120.05594 * 0.02562 * 7 6 5 9 9 C 1.38241 * 120.10869 * 359.95482 * 8 7 6 10 10 C 1.50702 * 119.97039 * 180.02562 * 9 8 7 11 11 N 1.46903 * 109.47170 * 90.00387 * 10 9 8 12 12 C 1.46846 * 110.99911 * 45.78639 * 11 10 9 13 13 C 1.53038 * 109.52104 * 185.83933 * 12 11 10 14 14 C 1.53116 * 109.28252 * 300.82348 * 13 12 11 15 15 C 1.53000 * 109.57596 * 177.59242 * 14 13 12 16 16 C 1.50693 * 109.47071 * 65.28378 * 15 14 13 17 17 H 1.08002 * 120.00347 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99778 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47265 * 89.99877 * 20 18 16 22 22 H 1.48496 * 109.47344 * 210.00152 * 20 18 16 23 23 H 1.48506 * 109.47440 * 330.00481 * 20 18 16 24 24 C 1.53123 * 109.15847 * 57.65306 * 14 13 12 25 25 C 1.46841 * 111.00136 * 170.00093 * 11 10 9 26 26 C 1.38163 * 120.06060 * 359.77247 * 9 8 7 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.08995 * 109.46783 * 254.71908 * 3 2 1 31 31 H 1.08998 * 109.46963 * 14.72110 * 3 2 1 32 32 H 1.08003 * 120.02329 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.96994 * 180.02562 * 7 6 5 34 34 H 1.07995 * 119.94036 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47461 * 210.00326 * 10 9 8 36 36 H 1.09007 * 109.47362 * 330.00375 * 10 9 8 37 37 H 1.08999 * 109.46128 * 305.85920 * 12 11 10 38 38 H 1.09007 * 109.45862 * 65.82843 * 12 11 10 39 39 H 1.08998 * 109.49742 * 180.88295 * 13 12 11 40 40 H 1.08996 * 109.53348 * 60.79025 * 13 12 11 41 41 H 1.09002 * 109.52377 * 297.75621 * 14 13 12 42 42 H 1.09000 * 109.47022 * 185.28685 * 15 14 13 43 43 H 1.08999 * 109.46575 * 305.28446 * 15 14 13 44 44 H 0.97000 * 119.99570 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.49990 * 182.40095 * 24 14 13 46 46 H 1.09001 * 109.53505 * 62.31026 * 24 14 13 47 47 H 1.08996 * 109.46670 * 294.17511 * 25 11 10 48 48 H 1.09003 * 109.46240 * 54.15805 * 25 11 10 49 49 H 1.08002 * 120.03450 * 180.25352 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1227 1.2437 0.9573 5 6 3.9045 2.3479 1.0842 6 6 3.6576 3.4678 0.3029 7 6 4.4539 4.5887 0.4334 8 6 5.4970 4.5954 1.3414 9 6 5.7448 3.4812 2.1212 10 6 6.8819 3.4922 3.1101 11 7 6.3992 3.9881 4.4059 12 6 5.1259 3.3541 4.7708 13 6 4.5820 3.9974 6.0485 14 6 5.6024 3.8226 7.1765 15 6 5.0919 4.5155 8.4415 16 6 3.8473 3.8192 8.9282 17 1 3.4594 2.9673 8.3895 18 6 3.2043 4.2690 10.0620 19 7 3.6770 5.3060 10.7182 20 14 1.6619 3.4053 10.6657 21 1 2.0382 2.3225 11.6097 22 1 0.7858 4.3838 11.3586 23 1 0.9355 2.8230 9.5087 24 6 6.9335 4.4490 6.7516 25 6 7.4093 3.7926 5.4536 26 6 4.9476 2.3594 1.9985 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 2.4797 1.4843 -0.9913 31 1 1.3844 2.1167 0.2611 32 1 2.8434 3.4628 -0.4067 33 1 4.2618 5.4607 -0.1743 34 1 6.1187 5.4728 1.4415 35 1 7.2692 2.4804 3.2298 36 1 7.6753 4.1440 2.7443 37 1 4.4079 3.4894 3.9619 38 1 5.2858 2.2892 4.9401 39 1 3.6448 3.5160 6.3277 40 1 4.4082 5.0596 5.8762 41 1 5.7468 2.7607 7.3758 42 1 5.8590 4.4714 9.2147 43 1 4.8615 5.5570 8.2173 44 1 3.2248 5.6221 11.5160 45 1 7.6763 4.2903 7.5333 46 1 6.7980 5.5184 6.5902 47 1 7.5585 2.7257 5.6197 48 1 8.3496 4.2465 5.1408 49 1 5.1390 1.4906 2.6109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572484204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:03 Heat of formation + Delta-G solvation = -4.202820 kcal Electronic energy + Delta-G solvation = -25919.239855 eV Core-core repulsion = 22425.282460 eV Total energy + Delta-G solvation = -3493.957395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45902 -38.96830 -37.56962 -34.72208 -34.30696 -32.52629 -31.20467 -30.23042 -30.14116 -28.00135 -26.89358 -25.42817 -23.34573 -22.76989 -22.48653 -21.23428 -20.42686 -20.24331 -18.84086 -17.85740 -16.68501 -16.21865 -16.15077 -16.05858 -15.65422 -14.93434 -14.81663 -14.43892 -14.32073 -13.71398 -13.70605 -13.41617 -13.31926 -13.03805 -12.78298 -12.52070 -12.39177 -12.00418 -11.79580 -11.69492 -11.60421 -11.40022 -11.23655 -11.05352 -10.89910 -10.76340 -10.56737 -10.54667 -10.20373 -9.90779 -9.88156 -9.47494 -9.05144 -8.88130 -8.81145 -8.30121 -8.27642 -8.00217 -5.92957 -3.93946 1.17052 1.36683 1.67486 3.11035 3.35615 3.41866 3.45406 3.59140 4.31392 4.41809 4.51543 4.61223 4.64637 4.72162 4.83808 4.94685 5.04542 5.16057 5.25666 5.36131 5.38812 5.42580 5.43979 5.48795 5.55258 5.62164 5.71619 5.82721 5.93067 5.95766 6.07438 6.11493 6.16404 6.19375 6.21381 6.31547 6.33073 6.49388 6.55921 6.62054 6.66764 6.74499 7.05230 7.17285 7.25698 7.26886 7.37744 7.44837 7.75967 7.93114 8.08389 8.51945 9.12715 9.69233 11.18478 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003241 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.593688 B = 8636.672713 C =10734.015023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C 0.088 3.912 4 O -0.312 6.312 5 C 0.127 3.873 6 C -0.211 4.211 7 C -0.081 4.081 8 C -0.135 4.135 9 C -0.037 4.037 10 C 0.091 3.909 11 N -0.529 5.529 12 C 0.052 3.948 13 C -0.099 4.099 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.111 4.111 25 C 0.059 3.941 26 C -0.143 4.143 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.028 0.972 48 H 0.066 0.934 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -5.848 -24.896 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.013 3.987 4 O -0.226 6.226 5 C 0.082 3.918 6 C -0.230 4.230 7 C -0.100 4.100 8 C -0.154 4.154 9 C -0.037 4.037 10 C -0.036 4.036 11 N -0.254 5.254 12 C -0.076 4.076 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.149 4.149 25 C -0.068 4.068 26 C -0.163 4.163 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.084 0.916 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.530 -5.421 -24.673 25.308 hybrid contribution -0.922 -1.182 0.355 1.541 sum 0.607 -6.603 -24.318 25.206 Atomic orbital electron populations 1.23906 0.95434 1.02655 0.98713 1.22672 0.95688 0.97788 1.01392 1.21800 0.88062 0.96874 0.91983 1.86090 1.42358 1.35804 1.58341 1.18895 0.91500 0.86044 0.95348 1.21193 1.03597 0.94526 1.03725 1.20916 0.94345 0.97177 0.97519 1.20945 0.99177 0.98164 0.97139 1.19564 0.95818 0.92804 0.95528 1.21102 0.94483 0.99056 0.88947 1.62118 1.04267 1.57922 1.01095 1.22344 0.90749 0.95544 0.98939 1.21537 0.98987 1.00923 0.92198 1.21238 0.92710 0.99159 0.96903 1.19111 0.95559 0.95623 0.90576 1.21267 1.10107 1.14132 1.09611 0.92737 1.25014 0.97514 0.95120 0.96855 1.69966 1.40278 1.24942 1.18465 0.86663 0.83466 0.79363 0.78928 1.20790 1.21306 1.19923 1.21685 0.98272 1.00624 0.94327 1.22125 0.94026 0.98403 0.92283 1.20337 0.95912 0.99906 1.00106 0.88173 0.87396 0.86259 0.91180 0.91432 0.85811 0.85814 0.85596 0.94143 0.89854 0.90956 0.95632 0.91064 0.91970 0.93126 0.96806 0.96528 0.93143 0.92125 0.91578 0.95339 0.91574 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 14.31 29.01 0.42 -0.72 16 2 C -0.16 -1.25 9.89 -36.03 -0.36 -1.60 16 3 C 0.09 0.76 5.15 36.01 0.19 0.95 16 4 O -0.31 -3.76 10.12 -19.41 -0.20 -3.96 16 5 C 0.13 1.56 6.69 -39.21 -0.26 1.30 16 6 C -0.21 -2.24 9.04 -39.43 -0.36 -2.60 16 7 C -0.08 -0.84 10.04 -39.61 -0.40 -1.23 16 8 C -0.14 -1.53 9.70 -39.56 -0.38 -1.91 16 9 C -0.04 -0.45 4.13 -104.65 -0.43 -0.88 16 10 C 0.09 1.12 5.43 -4.97 -0.03 1.09 16 11 N -0.53 -7.92 4.80 -236.11 -1.13 -9.06 16 12 C 0.05 0.85 4.57 -3.83 -0.02 0.84 16 13 C -0.10 -1.95 5.15 -26.65 -0.14 -2.09 16 14 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 15 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 16 C -0.51 -14.60 8.45 -34.44 -0.29 -14.89 16 17 H 0.05 1.52 7.08 -52.49 -0.37 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 25 C 0.06 0.88 5.42 -3.84 -0.02 0.86 16 26 C -0.14 -1.83 7.71 -39.43 -0.30 -2.14 16 27 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 28 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.07 0.50 7.66 -51.93 -0.40 0.11 16 31 H 0.07 0.54 7.38 -51.93 -0.38 0.16 16 32 H 0.12 1.03 6.30 -52.48 -0.33 0.70 16 33 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.07 1.19 5.63 -51.93 -0.29 0.89 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.51 7.06 -51.93 -0.37 1.15 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 49 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -31.40 389.20 -11.14 -42.55 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.45 Total: -0.85 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -2.95 Total: -24.92 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.40 Total: -35.69 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.20 Total: -3.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.40 -11.14 -42.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572484204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.344 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds