Wall clock time and date at job start Tue Mar 31 2020 12:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 O 1.42898 * 109.47187 * 134.72178 * 3 2 1 5 5 C 1.35894 * 117.00083 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05834 * 359.97438 * 5 4 3 7 7 C 1.38116 * 119.94781 * 180.02562 * 6 5 4 8 8 C 1.38290 * 120.05594 * 0.02562 * 7 6 5 9 9 C 1.38241 * 120.10869 * 359.95482 * 8 7 6 10 10 C 1.50702 * 119.97039 * 180.02562 * 9 8 7 11 11 N 1.46903 * 109.47170 * 90.00387 * 10 9 8 12 12 C 1.46846 * 110.99911 * 45.78639 * 11 10 9 13 13 C 1.53038 * 109.52104 * 185.83933 * 12 11 10 14 14 C 1.53116 * 109.28252 * 300.82348 * 13 12 11 15 15 C 1.53000 * 109.57596 * 177.59242 * 14 13 12 16 16 C 1.50693 * 109.47071 * 65.28378 * 15 14 13 17 17 H 1.08002 * 120.00347 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99778 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47265 * 89.99877 * 20 18 16 22 22 H 1.48496 * 109.47344 * 210.00152 * 20 18 16 23 23 H 1.48506 * 109.47440 * 330.00481 * 20 18 16 24 24 C 1.53123 * 109.15847 * 57.65306 * 14 13 12 25 25 C 1.46841 * 111.00136 * 170.00093 * 11 10 9 26 26 C 1.38163 * 120.06060 * 359.77247 * 9 8 7 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.08995 * 109.46783 * 254.71908 * 3 2 1 31 31 H 1.08998 * 109.46963 * 14.72110 * 3 2 1 32 32 H 1.08003 * 120.02329 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.96994 * 180.02562 * 7 6 5 34 34 H 1.07995 * 119.94036 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47461 * 210.00326 * 10 9 8 36 36 H 1.09007 * 109.47362 * 330.00375 * 10 9 8 37 37 H 1.08999 * 109.46128 * 305.85920 * 12 11 10 38 38 H 1.09007 * 109.45862 * 65.82843 * 12 11 10 39 39 H 1.08998 * 109.49742 * 180.88295 * 13 12 11 40 40 H 1.08996 * 109.53348 * 60.79025 * 13 12 11 41 41 H 1.09002 * 109.52377 * 297.75621 * 14 13 12 42 42 H 1.09000 * 109.47022 * 185.28685 * 15 14 13 43 43 H 1.08999 * 109.46575 * 305.28446 * 15 14 13 44 44 H 0.97000 * 119.99570 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.49990 * 182.40095 * 24 14 13 46 46 H 1.09001 * 109.53505 * 62.31026 * 24 14 13 47 47 H 1.08996 * 109.46670 * 294.17511 * 25 11 10 48 48 H 1.09003 * 109.46240 * 54.15805 * 25 11 10 49 49 H 1.08002 * 120.03450 * 180.25352 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1227 1.2437 0.9573 5 6 3.9045 2.3479 1.0842 6 6 3.6576 3.4678 0.3029 7 6 4.4539 4.5887 0.4334 8 6 5.4970 4.5954 1.3414 9 6 5.7448 3.4812 2.1212 10 6 6.8819 3.4922 3.1101 11 7 6.3992 3.9881 4.4059 12 6 5.1259 3.3541 4.7708 13 6 4.5820 3.9974 6.0485 14 6 5.6024 3.8226 7.1765 15 6 5.0919 4.5155 8.4415 16 6 3.8473 3.8192 8.9282 17 1 3.4594 2.9673 8.3895 18 6 3.2043 4.2690 10.0620 19 7 3.6770 5.3060 10.7182 20 14 1.6619 3.4053 10.6657 21 1 2.0382 2.3225 11.6097 22 1 0.7858 4.3838 11.3586 23 1 0.9355 2.8230 9.5087 24 6 6.9335 4.4490 6.7516 25 6 7.4093 3.7926 5.4536 26 6 4.9476 2.3594 1.9985 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 2.4797 1.4843 -0.9913 31 1 1.3844 2.1167 0.2611 32 1 2.8434 3.4628 -0.4067 33 1 4.2618 5.4607 -0.1743 34 1 6.1187 5.4728 1.4415 35 1 7.2692 2.4804 3.2298 36 1 7.6753 4.1440 2.7443 37 1 4.4079 3.4894 3.9619 38 1 5.2858 2.2892 4.9401 39 1 3.6448 3.5160 6.3277 40 1 4.4082 5.0596 5.8762 41 1 5.7468 2.7607 7.3758 42 1 5.8590 4.4714 9.2147 43 1 4.8615 5.5570 8.2173 44 1 3.2248 5.6221 11.5160 45 1 7.6763 4.2903 7.5333 46 1 6.7980 5.5184 6.5902 47 1 7.5585 2.7257 5.6197 48 1 8.3496 4.2465 5.1408 49 1 5.1390 1.4906 2.6109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572484204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:02 Heat of formation + Delta-G solvation = -20.910136 kcal Electronic energy + Delta-G solvation = -25919.964338 eV Core-core repulsion = 22425.282460 eV Total energy + Delta-G solvation = -3494.681879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32569 -40.14425 -38.57848 -36.20218 -35.01510 -34.39254 -32.43262 -31.54479 -31.09755 -29.63911 -27.63322 -26.82268 -25.00899 -24.03228 -23.44346 -22.49673 -21.70168 -20.86018 -20.42054 -18.70103 -18.43053 -17.42243 -17.02376 -16.90271 -16.82420 -16.46698 -15.90759 -15.76546 -15.28746 -15.15383 -14.82935 -14.63052 -14.34654 -14.19013 -14.14088 -13.75300 -13.50130 -13.34844 -13.24875 -12.93123 -12.88610 -12.63811 -12.54050 -12.29681 -12.21124 -12.10276 -12.01039 -11.98558 -11.73659 -11.59825 -11.26001 -10.89144 -10.69815 -10.52357 -10.46509 -9.82116 -9.20539 -9.11328 -8.17646 -6.27020 0.31656 0.51410 1.10565 1.38202 1.39415 1.50443 2.38830 2.41231 2.69387 3.14804 3.20169 3.70349 3.82440 3.94776 4.02637 4.04478 4.06484 4.10924 4.16278 4.24637 4.34074 4.37854 4.44817 4.46554 4.54719 4.59260 4.66253 4.72195 4.75138 4.81519 4.87335 4.94467 4.97041 5.08159 5.10917 5.16115 5.33462 5.38560 5.41434 5.44457 5.49678 5.57829 5.58283 5.62563 5.68820 5.80754 5.84351 5.89433 6.15099 6.21592 6.30940 6.46163 6.88819 7.41052 8.94321 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003241 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.593688 B = 8636.672713 C =10734.015023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.179 4.179 3 C 0.083 3.917 4 O -0.333 6.333 5 C 0.113 3.887 6 C -0.212 4.212 7 C -0.081 4.081 8 C -0.143 4.143 9 C -0.048 4.048 10 C 0.094 3.906 11 N -0.537 5.537 12 C 0.068 3.932 13 C -0.093 4.093 14 C -0.074 4.074 15 C 0.035 3.965 16 C -0.530 4.530 17 H 0.057 0.943 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.959 3.041 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 C -0.107 4.107 25 C 0.066 3.934 26 C -0.162 4.162 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.045 0.955 42 H -0.012 1.012 43 H -0.012 1.012 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.033 0.967 48 H 0.096 0.904 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -6.273 -26.886 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.247 6.247 5 C 0.068 3.932 6 C -0.231 4.231 7 C -0.099 4.099 8 C -0.162 4.162 9 C -0.048 4.048 10 C -0.032 4.032 11 N -0.262 5.262 12 C -0.060 4.060 13 C -0.130 4.130 14 C -0.093 4.093 15 C -0.002 4.002 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.190 1.190 24 C -0.144 4.144 25 C -0.062 4.062 26 C -0.181 4.181 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.114 0.886 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.143 -5.857 -26.683 27.343 hybrid contribution -0.835 -1.025 0.946 1.626 sum 0.308 -6.881 -25.738 26.644 Atomic orbital electron populations 1.24126 0.95066 1.03725 0.96776 1.22721 0.96219 0.97521 1.03197 1.22009 0.87555 0.97540 0.92048 1.86063 1.43134 1.36114 1.59439 1.19088 0.91640 0.86743 0.95761 1.21487 1.04076 0.93959 1.03537 1.21274 0.93556 0.97887 0.97202 1.21195 0.99691 0.98193 0.97102 1.19616 0.96006 0.93101 0.96076 1.21164 0.94971 0.99814 0.87254 1.62072 1.03632 1.58139 1.02319 1.22069 0.91926 0.95045 0.96932 1.21401 0.97934 1.00093 0.93617 1.21086 0.94904 0.98320 0.94997 1.18995 0.94471 0.94427 0.92335 1.21643 1.10959 1.14315 1.09916 0.92511 1.25939 1.01039 0.95828 0.97054 1.70100 1.41950 1.26462 1.19016 0.85536 0.79172 0.78321 0.78584 1.19799 1.20697 1.18963 1.21597 0.96371 1.00054 0.96412 1.22071 0.94906 0.98563 0.90631 1.20398 0.96862 1.00050 1.00819 0.87337 0.86103 0.86461 0.89768 0.90832 0.83630 0.83120 0.84320 0.93562 0.87728 0.90670 0.95717 0.93193 0.93356 0.93623 0.99396 0.99362 0.92903 0.91691 0.92449 0.94867 0.88556 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 14.31 67.78 0.97 -0.92 16 2 C -0.18 -2.67 9.89 25.64 0.25 -2.42 16 3 C 0.08 1.35 5.15 71.24 0.37 1.72 16 4 O -0.33 -7.92 10.12 -92.36 -0.93 -8.85 16 5 C 0.11 2.68 6.69 22.51 0.15 2.83 16 6 C -0.21 -4.08 9.04 22.36 0.20 -3.88 16 7 C -0.08 -1.47 10.04 22.25 0.22 -1.24 16 8 C -0.14 -2.92 9.70 22.28 0.22 -2.70 16 9 C -0.05 -1.10 4.13 -19.88 -0.08 -1.18 16 10 C 0.09 2.10 5.43 85.56 0.46 2.57 16 11 N -0.54 -15.20 4.80 -900.92 -4.32 -19.52 16 12 C 0.07 2.23 4.57 86.33 0.39 2.62 16 13 C -0.09 -3.75 5.15 30.65 0.16 -3.59 16 14 C -0.07 -3.20 2.20 -10.71 -0.02 -3.23 16 15 C 0.03 1.90 4.45 29.85 0.13 2.03 16 16 C -0.53 -31.00 8.45 25.60 0.22 -30.78 16 17 H 0.06 3.22 7.08 -2.91 -0.02 3.20 16 18 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 19 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 20 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.11 -3.75 5.38 30.65 0.16 -3.58 16 25 C 0.07 1.82 5.42 86.33 0.47 2.29 16 26 C -0.16 -4.06 7.71 22.37 0.17 -3.89 16 27 H 0.11 1.08 7.90 -2.91 -0.02 1.05 16 28 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.08 1.08 7.66 -2.39 -0.02 1.07 16 31 H 0.07 1.08 7.38 -2.39 -0.02 1.06 16 32 H 0.15 2.05 6.30 -2.91 -0.02 2.03 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.05 0.99 8.02 -2.39 -0.02 0.97 16 36 H 0.10 1.90 8.09 -2.38 -0.02 1.88 16 37 H 0.08 2.44 5.63 -2.39 -0.01 2.43 16 38 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.05 2.19 7.06 -2.39 -0.02 2.17 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.10 2.15 8.12 -2.39 -0.02 2.13 16 49 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -69.13 389.20 2.85 -66.28 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.89 Total: 15.54 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 4.91 Total: -42.97 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -4.04 Total: -77.62 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.93 Total: -8.85 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.13 2.85 -66.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572484204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.367 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds