Wall clock time and date at job start Tue Mar 31 2020 11:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.08997 * 109.83731 * 290.89624 * 3 2 1 5 5 C 1.53815 * 109.83100 * 51.94837 * 3 2 1 6 6 C 1.52852 * 108.73451 * 182.94921 * 5 3 2 7 7 C 1.50593 * 110.49564 * 308.42999 * 6 5 3 8 8 C 1.38502 * 118.92768 * 200.54418 * 7 6 5 9 9 C 1.38125 * 120.30135 * 180.36679 * 8 7 6 10 10 C 1.38303 * 120.15085 * 0.02562 * 9 8 7 11 11 C 1.38034 * 119.91088 * 359.86879 * 10 9 8 12 12 C 1.38571 * 121.49782 * 20.74414 * 7 6 5 13 13 N 1.40180 * 120.82120 * 359.53504 * 12 7 6 14 14 C 1.34769 * 120.55040 * 193.38837 * 13 12 7 15 15 O 1.21298 * 120.00324 * 12.14583 * 14 13 12 16 16 C 1.50700 * 120.00198 * 192.15340 * 14 13 12 17 17 C 1.53006 * 109.47268 * 172.24635 * 16 14 13 18 18 C 1.53000 * 109.46956 * 179.97438 * 17 16 14 19 19 C 1.52992 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47366 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99653 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00314 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47256 * 89.99861 * 24 22 20 26 26 H 1.48503 * 109.47217 * 209.99958 * 24 22 20 27 27 H 1.48501 * 109.46993 * 329.99836 * 24 22 20 28 28 H 1.08995 * 109.47089 * 293.44696 * 1 2 3 29 29 H 1.09004 * 109.46988 * 53.44640 * 1 2 3 30 30 H 1.08997 * 109.46652 * 173.44044 * 1 2 3 31 31 H 1.09006 * 109.47449 * 240.00436 * 2 1 3 32 32 H 1.09004 * 109.47417 * 119.99958 * 2 1 3 33 33 H 1.09008 * 109.72835 * 63.11849 * 5 3 2 34 34 H 1.09004 * 109.63894 * 302.73102 * 5 3 2 35 35 H 1.09002 * 109.26913 * 188.16576 * 6 5 3 36 36 H 1.08995 * 109.23989 * 68.67432 * 6 5 3 37 37 H 1.07998 * 119.85070 * 0.34246 * 8 7 6 38 38 H 1.07999 * 119.92564 * 179.97438 * 9 8 7 39 39 H 1.08004 * 120.04830 * 179.97438 * 10 9 8 40 40 H 1.07993 * 119.98549 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.47486 * 52.24504 * 16 14 13 42 42 H 1.08998 * 109.46625 * 292.24512 * 16 14 13 43 43 H 1.09007 * 109.46859 * 59.99934 * 17 16 14 44 44 H 1.08997 * 109.46754 * 299.99815 * 17 16 14 45 45 H 1.08999 * 109.46923 * 59.99810 * 18 17 16 46 46 H 1.09003 * 109.47343 * 300.00392 * 18 17 16 47 47 H 1.09003 * 109.47367 * 300.00390 * 19 18 17 48 48 H 1.09006 * 109.47275 * 60.00489 * 19 18 17 49 49 H 0.96997 * 119.99409 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.8185 1.9131 -0.9579 5 6 1.3731 2.2317 1.1394 6 6 1.8432 3.6846 1.0710 7 6 3.3466 3.7501 1.0133 8 6 3.9802 4.9275 1.3744 9 6 5.3573 5.0214 1.3249 10 6 6.1131 3.9388 0.9131 11 6 5.4895 2.7610 0.5535 12 6 4.1035 2.6637 0.6045 13 7 3.4897 1.4577 0.2385 14 6 4.2182 0.3321 0.1022 15 8 5.3621 0.2975 0.5041 16 6 3.6117 -0.8837 -0.5498 17 6 4.6935 -1.9462 -0.7539 18 6 4.0776 -3.1808 -1.4152 19 6 5.1595 -4.2430 -1.6199 20 6 4.5527 -5.4592 -2.2707 21 1 3.5006 -5.4730 -2.5144 22 6 5.3405 -6.5544 -2.5551 23 7 6.6218 -6.5374 -2.2588 24 14 4.5885 -8.0617 -3.3624 25 1 4.6752 -7.9276 -4.8388 26 1 5.3282 -9.2751 -2.9313 27 1 3.1643 -8.1807 -2.9589 28 1 -0.3633 0.4089 0.9428 29 1 -0.3633 0.6121 -0.8256 30 1 -0.3632 -1.0209 -0.1174 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6561 1.8012 2.1000 34 1 0.2895 2.1928 1.0267 35 1 1.4935 4.2178 1.9550 36 1 1.4281 4.1548 0.1796 37 1 3.3948 5.7763 1.6959 38 1 5.8451 5.9426 1.6075 39 1 7.1898 4.0142 0.8746 40 1 6.0785 1.9147 0.2323 41 1 3.1889 -0.6055 -1.5152 42 1 2.8250 -1.2843 0.0895 43 1 5.1163 -2.2244 0.2116 44 1 5.4802 -1.5455 -1.3931 45 1 3.6545 -2.9028 -2.3805 46 1 3.2910 -3.5812 -0.7756 47 1 5.9457 -3.8422 -2.2597 48 1 5.5829 -4.5210 -0.6547 49 1 7.1760 -7.3080 -2.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588940014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:12 Heat of formation + Delta-G solvation = 11.185238 kcal Electronic energy + Delta-G solvation = -26473.351142 eV Core-core repulsion = 22980.061023 eV Total energy + Delta-G solvation = -3493.290119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58921 -38.88963 -37.57200 -35.30251 -33.80992 -33.74908 -32.48258 -30.64961 -29.56369 -29.35387 -26.26355 -25.80944 -24.01013 -23.25912 -22.32725 -21.72484 -20.38035 -19.79507 -19.35846 -17.39071 -16.96718 -16.21655 -16.18096 -15.74568 -15.28739 -14.95159 -14.77739 -14.53002 -14.42594 -14.07371 -13.78495 -13.44588 -13.36823 -13.10038 -12.90508 -12.68732 -12.40686 -12.24437 -12.13220 -11.70015 -11.63657 -11.53851 -11.42968 -11.27744 -10.96690 -10.88555 -10.66360 -10.50938 -10.41464 -10.17657 -9.93524 -9.62281 -9.56087 -9.21282 -8.98607 -8.81879 -8.30909 -7.94296 -5.95684 -3.98268 1.17674 1.30134 2.55052 2.63537 3.33523 3.39686 3.42591 3.69847 4.14582 4.30710 4.41774 4.48433 4.54352 4.69215 4.75256 4.91286 4.97126 5.04097 5.07462 5.17925 5.20792 5.25953 5.28519 5.32986 5.39741 5.46333 5.50747 5.53822 5.63747 5.68905 5.75658 5.78518 5.87233 5.94931 6.00909 6.09840 6.14277 6.27383 6.31239 6.45274 6.49421 6.54103 6.81095 6.98477 7.02673 7.16908 7.22731 7.73461 7.89199 8.02982 8.05826 8.47143 9.09487 9.65436 11.15675 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002692 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.244087 B =10397.892503 C =11670.624392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.084 0.916 5 C -0.133 4.133 6 C -0.076 4.076 7 C -0.124 4.124 8 C -0.101 4.101 9 C -0.147 4.147 10 C -0.101 4.101 11 C -0.148 4.148 12 C 0.165 3.835 13 N -0.561 5.561 14 C 0.516 3.484 15 O -0.509 6.509 16 C -0.163 4.163 17 C -0.110 4.110 18 C -0.109 4.109 19 C 0.020 3.980 20 C -0.520 4.520 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.015 0.985 48 H 0.016 0.984 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 24.524 7.114 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.210 4.210 3 C 0.037 3.963 4 H 0.102 0.898 5 C -0.170 4.170 6 C -0.113 4.113 7 C -0.127 4.127 8 C -0.119 4.119 9 C -0.166 4.166 10 C -0.120 4.120 11 C -0.168 4.168 12 C 0.071 3.929 13 N -0.285 5.285 14 C 0.308 3.692 15 O -0.384 6.384 16 C -0.202 4.202 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.017 4.017 20 C -0.558 4.558 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.177 0.823 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.756 24.283 7.299 27.949 hybrid contribution -0.274 -0.676 -0.416 0.840 sum -12.030 23.607 6.883 27.374 Atomic orbital electron populations 1.21853 0.94615 1.02659 1.01922 1.23356 0.97231 0.95169 1.05257 1.21597 0.78050 0.97549 0.99078 0.89842 1.22072 1.01014 0.95036 0.98919 1.20399 0.91188 0.97018 1.02734 1.19441 0.95417 0.93790 1.04027 1.20822 0.94589 0.96477 1.00052 1.21030 0.93908 0.98893 1.02724 1.21091 0.99915 0.92592 0.98377 1.21956 0.93247 1.00041 1.01567 1.17717 0.92012 0.85482 0.97730 1.46041 1.08757 1.07378 1.66338 1.21272 0.86012 0.83879 0.78074 1.90578 1.18480 1.82441 1.46866 1.23213 1.01949 0.93369 1.01653 1.21600 0.96604 0.94582 1.02043 1.21630 0.99849 0.94680 0.98473 1.19092 0.93397 0.92231 0.96992 1.21275 0.95264 0.99790 1.39506 0.92753 1.25044 0.94867 0.98692 0.95978 1.69978 1.05061 1.30462 1.47959 0.86616 0.79223 0.82630 0.79645 1.20710 1.21254 1.19917 0.92460 0.92359 0.91698 0.86963 0.90149 0.90894 0.89300 0.90336 0.90611 0.86090 0.86309 0.85884 0.82344 0.88419 0.85811 0.91560 0.92109 0.93493 0.93390 0.96643 0.96583 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.10 37.16 0.34 -0.61 16 2 C -0.17 -1.39 3.47 -26.73 -0.09 -1.48 16 3 C 0.14 1.22 3.00 -67.27 -0.20 1.02 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -0.97 4.94 -26.38 -0.13 -1.10 16 6 C -0.08 -0.58 5.77 -28.01 -0.16 -0.74 16 7 C -0.12 -1.32 5.76 -104.45 -0.60 -1.92 16 8 C -0.10 -0.97 9.66 -39.53 -0.38 -1.35 16 9 C -0.15 -1.47 10.04 -39.60 -0.40 -1.86 16 10 C -0.10 -1.18 10.05 -39.63 -0.40 -1.58 16 11 C -0.15 -2.08 8.82 -39.36 -0.35 -2.43 16 12 C 0.16 2.15 6.30 -83.62 -0.53 1.62 16 13 N -0.56 -6.90 2.97 -105.60 -0.31 -7.21 16 14 C 0.52 7.53 7.12 -10.99 -0.08 7.45 16 15 O -0.51 -9.16 12.85 5.54 0.07 -9.09 16 16 C -0.16 -2.14 3.24 -27.88 -0.09 -2.23 16 17 C -0.11 -1.93 4.54 -26.73 -0.12 -2.05 16 18 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 19 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 20 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 24 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.06 0.32 6.70 -51.93 -0.35 -0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.94 4.20 -52.99 -0.22 0.71 16 32 H 0.08 0.72 6.37 -51.93 -0.33 0.38 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.09 0.46 6.37 -51.93 -0.33 0.13 16 35 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.16 2.55 5.19 -52.60 -0.27 2.27 16 41 H 0.10 1.10 6.63 -51.93 -0.34 0.76 16 42 H 0.12 1.39 4.42 -51.93 -0.23 1.16 16 43 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -33.46 374.12 -10.72 -44.19 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.95 Total: -0.70 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.88 Total: -22.87 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.42 Total: -33.97 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.46 -10.72 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588940014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.371 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds