Wall clock time and date at job start Tue Mar 31 2020 11:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.08997 * 109.83731 * 290.89624 * 3 2 1 5 5 C 1.53815 * 109.83100 * 51.94837 * 3 2 1 6 6 C 1.52852 * 108.73451 * 182.94921 * 5 3 2 7 7 C 1.50593 * 110.49564 * 308.42999 * 6 5 3 8 8 C 1.38502 * 118.92768 * 200.54418 * 7 6 5 9 9 C 1.38125 * 120.30135 * 180.36679 * 8 7 6 10 10 C 1.38303 * 120.15085 * 0.02562 * 9 8 7 11 11 C 1.38034 * 119.91088 * 359.86879 * 10 9 8 12 12 C 1.38571 * 121.49782 * 20.74414 * 7 6 5 13 13 N 1.40180 * 120.82120 * 359.53504 * 12 7 6 14 14 C 1.34769 * 120.55040 * 193.38837 * 13 12 7 15 15 O 1.21298 * 120.00324 * 12.14583 * 14 13 12 16 16 C 1.50700 * 120.00198 * 192.15340 * 14 13 12 17 17 C 1.53006 * 109.47268 * 172.24635 * 16 14 13 18 18 C 1.53000 * 109.46956 * 179.97438 * 17 16 14 19 19 C 1.52992 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47366 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99653 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00314 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47256 * 89.99861 * 24 22 20 26 26 H 1.48503 * 109.47217 * 209.99958 * 24 22 20 27 27 H 1.48501 * 109.46993 * 329.99836 * 24 22 20 28 28 H 1.08995 * 109.47089 * 293.44696 * 1 2 3 29 29 H 1.09004 * 109.46988 * 53.44640 * 1 2 3 30 30 H 1.08997 * 109.46652 * 173.44044 * 1 2 3 31 31 H 1.09006 * 109.47449 * 240.00436 * 2 1 3 32 32 H 1.09004 * 109.47417 * 119.99958 * 2 1 3 33 33 H 1.09008 * 109.72835 * 63.11849 * 5 3 2 34 34 H 1.09004 * 109.63894 * 302.73102 * 5 3 2 35 35 H 1.09002 * 109.26913 * 188.16576 * 6 5 3 36 36 H 1.08995 * 109.23989 * 68.67432 * 6 5 3 37 37 H 1.07998 * 119.85070 * 0.34246 * 8 7 6 38 38 H 1.07999 * 119.92564 * 179.97438 * 9 8 7 39 39 H 1.08004 * 120.04830 * 179.97438 * 10 9 8 40 40 H 1.07993 * 119.98549 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.47486 * 52.24504 * 16 14 13 42 42 H 1.08998 * 109.46625 * 292.24512 * 16 14 13 43 43 H 1.09007 * 109.46859 * 59.99934 * 17 16 14 44 44 H 1.08997 * 109.46754 * 299.99815 * 17 16 14 45 45 H 1.08999 * 109.46923 * 59.99810 * 18 17 16 46 46 H 1.09003 * 109.47343 * 300.00392 * 18 17 16 47 47 H 1.09003 * 109.47367 * 300.00390 * 19 18 17 48 48 H 1.09006 * 109.47275 * 60.00489 * 19 18 17 49 49 H 0.96997 * 119.99409 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.8185 1.9131 -0.9579 5 6 1.3731 2.2317 1.1394 6 6 1.8432 3.6846 1.0710 7 6 3.3466 3.7501 1.0133 8 6 3.9802 4.9275 1.3744 9 6 5.3573 5.0214 1.3249 10 6 6.1131 3.9388 0.9131 11 6 5.4895 2.7610 0.5535 12 6 4.1035 2.6637 0.6045 13 7 3.4897 1.4577 0.2385 14 6 4.2182 0.3321 0.1022 15 8 5.3621 0.2975 0.5041 16 6 3.6117 -0.8837 -0.5498 17 6 4.6935 -1.9462 -0.7539 18 6 4.0776 -3.1808 -1.4152 19 6 5.1595 -4.2430 -1.6199 20 6 4.5527 -5.4592 -2.2707 21 1 3.5006 -5.4730 -2.5144 22 6 5.3405 -6.5544 -2.5551 23 7 6.6218 -6.5374 -2.2588 24 14 4.5885 -8.0617 -3.3624 25 1 4.6752 -7.9276 -4.8388 26 1 5.3282 -9.2751 -2.9313 27 1 3.1643 -8.1807 -2.9589 28 1 -0.3633 0.4089 0.9428 29 1 -0.3633 0.6121 -0.8256 30 1 -0.3632 -1.0209 -0.1174 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6561 1.8012 2.1000 34 1 0.2895 2.1928 1.0267 35 1 1.4935 4.2178 1.9550 36 1 1.4281 4.1548 0.1796 37 1 3.3948 5.7763 1.6959 38 1 5.8451 5.9426 1.6075 39 1 7.1898 4.0142 0.8746 40 1 6.0785 1.9147 0.2323 41 1 3.1889 -0.6055 -1.5152 42 1 2.8250 -1.2843 0.0895 43 1 5.1163 -2.2244 0.2116 44 1 5.4802 -1.5455 -1.3931 45 1 3.6545 -2.9028 -2.3805 46 1 3.2910 -3.5812 -0.7756 47 1 5.9457 -3.8422 -2.2597 48 1 5.5829 -4.5210 -0.6547 49 1 7.1760 -7.3080 -2.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588940014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:11 Heat of formation + Delta-G solvation = -6.199271 kcal Electronic energy + Delta-G solvation = -26474.104991 eV Core-core repulsion = 22980.061023 eV Total energy + Delta-G solvation = -3494.043968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50635 -39.84562 -38.42285 -36.81994 -35.09492 -34.63068 -34.04869 -31.91429 -30.62391 -30.25957 -27.86469 -26.52728 -25.33298 -24.14612 -23.51945 -22.73522 -21.73331 -20.97816 -20.21235 -18.46993 -18.23124 -17.94215 -17.01764 -16.86062 -16.49974 -16.09695 -15.98836 -15.54119 -15.51200 -15.02269 -14.68371 -14.50372 -14.35560 -14.14418 -14.02309 -13.72384 -13.56272 -13.52263 -13.31739 -12.90229 -12.79580 -12.59522 -12.45736 -12.41124 -12.28458 -12.20520 -12.03272 -11.62854 -11.61666 -11.41286 -11.32613 -11.14087 -10.98458 -10.70369 -10.56532 -10.55146 -9.65633 -8.84200 -8.18865 -6.31081 0.29350 0.43014 1.40289 1.42639 1.50577 1.53677 1.73039 2.41803 2.85198 3.14053 3.30427 3.64019 3.70496 3.83579 3.89214 3.98815 4.05326 4.18504 4.21356 4.31212 4.33736 4.47088 4.50235 4.56270 4.58095 4.63855 4.69071 4.74173 4.75005 4.85605 4.92683 4.98384 5.00714 5.12760 5.14525 5.21219 5.25047 5.27274 5.32222 5.34176 5.34981 5.49203 5.49785 5.55628 5.63579 5.63818 5.77095 5.87525 6.14779 6.24628 6.27514 6.87604 6.97484 7.38696 8.93558 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002692 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.244087 B =10397.892503 C =11670.624392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.174 4.174 3 C 0.132 3.868 4 H 0.098 0.902 5 C -0.128 4.128 6 C -0.076 4.076 7 C -0.123 4.123 8 C -0.100 4.100 9 C -0.144 4.144 10 C -0.116 4.116 11 C -0.181 4.181 12 C 0.136 3.864 13 N -0.556 5.556 14 C 0.509 3.491 15 O -0.558 6.558 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.093 4.093 19 C 0.019 3.981 20 C -0.540 4.540 21 H 0.068 0.932 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.257 1.257 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.064 0.936 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 26.235 6.918 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.210 4.210 3 C 0.031 3.969 4 H 0.116 0.884 5 C -0.166 4.166 6 C -0.113 4.113 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.163 4.163 10 C -0.134 4.134 11 C -0.201 4.201 12 C 0.042 3.958 13 N -0.280 5.280 14 C 0.301 3.699 15 O -0.436 6.436 16 C -0.187 4.187 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.018 4.018 20 C -0.578 4.578 21 H 0.086 0.914 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.181 1.181 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.974 26.030 7.101 31.355 hybrid contribution 1.080 -1.104 -0.316 1.577 sum -14.893 24.926 6.784 29.818 Atomic orbital electron populations 1.21825 0.92689 1.03009 1.03040 1.23264 0.98845 0.94507 1.04411 1.21950 0.75891 0.98546 1.00516 0.88448 1.22093 1.02539 0.94562 0.97358 1.20525 0.88700 0.97456 1.04579 1.19895 0.97310 0.93001 1.02388 1.21290 0.94677 0.97108 0.98716 1.21388 0.94448 0.99063 1.01358 1.21268 1.00658 0.92655 0.98843 1.21862 0.94283 1.00172 1.03822 1.17979 0.91941 0.86579 0.99274 1.46108 1.10081 1.06475 1.65300 1.21494 0.85562 0.84939 0.77878 1.90578 1.20563 1.83408 1.49094 1.23278 1.00405 0.91538 1.03520 1.21401 0.97470 0.95143 1.00005 1.21417 0.98055 0.93626 0.99919 1.19051 0.94419 0.93955 0.94388 1.21754 0.96030 1.00529 1.39440 0.91365 1.26109 0.95249 1.02568 0.96566 1.70143 1.06872 1.31681 1.49301 0.85381 0.78892 0.77741 0.78630 1.19716 1.21051 1.18137 0.91464 0.91020 0.91873 0.87331 0.91314 0.92376 0.86284 0.88271 0.88688 0.82614 0.83534 0.85231 0.85597 0.85788 0.83279 0.93850 0.94292 0.91864 0.91732 0.99902 0.99846 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.10 71.98 0.66 -0.67 16 2 C -0.17 -2.37 3.47 30.59 0.11 -2.26 16 3 C 0.13 2.02 3.00 45.18 0.14 2.15 16 4 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.13 -1.46 4.94 30.82 0.15 -1.31 16 6 C -0.08 -0.85 5.77 29.76 0.17 -0.68 16 7 C -0.12 -2.37 5.76 -19.76 -0.11 -2.48 16 8 C -0.10 -1.64 9.66 22.31 0.22 -1.42 16 9 C -0.14 -2.65 10.04 22.26 0.22 -2.42 16 10 C -0.12 -2.80 10.05 22.24 0.22 -2.58 16 11 C -0.18 -5.49 8.82 22.41 0.20 -5.29 16 12 C 0.14 3.59 6.30 38.08 0.24 3.83 16 13 N -0.56 -13.71 2.97 -606.40 -1.80 -15.51 16 14 C 0.51 15.61 7.12 87.66 0.62 16.23 16 15 O -0.56 -22.11 12.85 -3.08 -0.04 -22.15 16 16 C -0.15 -3.92 3.24 29.85 0.10 -3.82 16 17 C -0.10 -3.77 4.54 30.60 0.14 -3.63 16 18 C -0.09 -3.77 5.15 30.59 0.16 -3.61 16 19 C 0.02 1.05 4.97 29.85 0.15 1.20 16 20 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 21 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 22 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 23 N -0.94 -59.56 13.29 21.45 0.28 -59.28 16 24 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 28 H 0.07 0.48 6.70 -2.39 -0.02 0.46 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 1.54 4.20 -3.38 -0.01 1.52 16 32 H 0.07 1.11 6.37 -2.38 -0.02 1.10 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.12 0.67 6.37 -2.38 -0.02 0.65 16 35 H 0.10 0.76 8.12 -2.39 -0.02 0.74 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.13 4.61 5.19 -4.62 -0.02 4.59 16 41 H 0.12 2.61 6.63 -2.39 -0.02 2.60 16 42 H 0.15 3.19 4.42 -2.39 -0.01 3.18 16 43 H 0.04 1.77 8.01 -2.38 -0.02 1.75 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 48 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.32 374.12 5.46 -72.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.91 Total: 15.00 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 4.07 Total: -37.78 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.51 Total: -74.79 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.04 Total: -22.15 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.32 5.46 -72.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588940014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.663 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds