Wall clock time and date at job start Tue Mar 31 2020 11:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 H 1.09003 * 109.47202 * 303.75036 * 3 2 1 5 5 C 1.50695 * 109.46956 * 183.74635 * 3 2 1 6 6 H 1.08009 * 120.00131 * 245.25448 * 5 3 2 7 7 C 1.37874 * 120.00362 * 65.26085 * 5 3 2 8 8 N 1.31517 * 119.99771 * 5.41481 * 7 5 3 9 9 Si 1.86800 * 120.00401 * 185.41791 * 7 5 3 10 10 H 1.48509 * 109.46899 * 94.99458 * 9 7 5 11 11 H 1.48500 * 109.47056 * 214.99503 * 9 7 5 12 12 H 1.48499 * 109.47234 * 334.99684 * 9 7 5 13 13 N 1.46508 * 109.46873 * 63.74811 * 3 2 1 14 14 C 1.34779 * 119.99688 * 275.00060 * 13 3 2 15 15 O 1.21273 * 120.00076 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99484 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.05428 * 333.15687 * 16 14 13 18 18 C 1.54261 * 110.03093 * 211.73608 * 16 14 13 19 19 C 1.54880 * 104.19790 * 217.10740 * 18 16 14 20 20 C 1.54895 * 102.75006 * 37.94425 * 19 18 16 21 21 C 1.53871 * 110.02913 * 94.57233 * 16 14 13 22 22 H 1.09001 * 110.03066 * 238.56548 * 21 16 14 23 23 C 1.52996 * 110.07649 * 359.97438 * 21 16 14 24 24 C 1.50707 * 109.47350 * 183.30714 * 23 21 16 25 25 C 1.38225 * 119.99953 * 269.72786 * 24 23 21 26 26 C 1.38238 * 119.99994 * 179.80916 * 25 24 23 27 27 C 1.38237 * 119.99499 * 0.39696 * 26 25 24 28 28 C 1.38231 * 120.00465 * 359.85305 * 27 26 25 29 29 C 1.38235 * 119.99761 * 359.96431 * 28 27 26 30 30 H 1.08996 * 109.47445 * 299.99433 * 1 2 3 31 31 H 1.08998 * 109.47343 * 59.99891 * 1 2 3 32 32 H 1.09007 * 109.46812 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47445 * 240.00567 * 2 1 3 34 34 H 1.08998 * 109.47343 * 120.00109 * 2 1 3 35 35 H 0.96998 * 120.00168 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99954 * 95.00003 * 13 3 2 37 37 H 1.09001 * 110.48387 * 98.42879 * 18 16 14 38 38 H 1.09005 * 110.59906 * 335.84247 * 18 16 14 39 39 H 1.09006 * 110.75644 * 279.63162 * 19 18 16 40 40 H 1.09001 * 110.75646 * 156.25838 * 19 18 16 41 41 H 1.09003 * 110.48677 * 203.38045 * 20 19 18 42 42 H 1.08994 * 110.59696 * 80.78925 * 20 19 18 43 43 H 1.09002 * 109.47424 * 303.30835 * 23 21 16 44 44 H 1.09003 * 109.47388 * 63.30650 * 23 21 16 45 45 H 1.07999 * 120.00002 * 359.97438 * 25 24 23 46 46 H 1.07996 * 120.00302 * 180.23113 * 26 25 24 47 47 H 1.08010 * 119.99497 * 179.83482 * 27 26 25 48 48 H 1.08002 * 120.00315 * 179.97438 * 28 27 26 49 49 H 1.07997 * 120.00194 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6228 1.9754 -0.8545 5 6 3.5440 1.4436 -0.0928 6 1 4.1357 1.8169 0.7301 7 6 4.1650 0.9681 -1.2283 8 7 3.4465 0.6132 -2.2711 9 14 6.0269 0.8278 -1.2855 10 1 6.4309 -0.5525 -0.9153 11 1 6.5042 1.1319 -2.6584 12 1 6.6256 1.7923 -0.3283 13 7 1.6267 2.1066 1.2388 14 6 0.4072 2.6742 1.3247 15 8 -0.3480 2.6348 0.3767 16 6 -0.0176 3.3577 2.5988 17 1 0.5081 2.9234 3.4492 18 6 -1.5416 3.2165 2.7914 19 6 -1.9742 4.5712 3.4050 20 6 -1.0791 5.5880 2.6539 21 6 0.2765 4.8655 2.5114 22 1 0.9449 5.1630 3.3194 23 6 0.9088 5.1996 1.1588 24 6 1.2654 6.6634 1.1188 25 6 0.3481 7.5856 0.6512 26 6 0.6737 8.9287 0.6182 27 6 1.9197 9.3484 1.0452 28 6 2.8389 8.4255 1.5080 29 6 2.5118 7.0829 1.5446 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8833 0.2784 -3.0698 36 1 2.2307 2.1377 1.9972 37 1 -1.7654 2.3986 3.4764 38 1 -2.0361 3.0564 1.8332 39 1 -1.7695 4.5933 4.4754 40 1 -3.0285 4.7654 3.2080 41 1 -0.9653 6.5008 3.2386 42 1 -1.4959 5.8140 1.6725 43 1 1.8101 4.6023 1.0215 44 1 0.2001 4.9764 0.3613 45 1 -0.6239 7.2572 0.3141 46 1 -0.0442 9.6497 0.2563 47 1 2.1751 10.3975 1.0169 48 1 3.8125 8.7534 1.8413 49 1 3.2298 6.3619 1.9065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597506988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:38 Heat of formation + Delta-G solvation = -43.928227 kcal Electronic energy + Delta-G solvation = -27315.010225 eV Core-core repulsion = 23819.330207 eV Total energy + Delta-G solvation = -3495.680018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20123 -38.92772 -37.10691 -34.86269 -32.98910 -32.31093 -31.11033 -30.80552 -29.22072 -28.73526 -26.81184 -25.06651 -23.11898 -22.53164 -21.53086 -21.22699 -20.35074 -19.50501 -18.80550 -17.06336 -16.55971 -16.02731 -15.51357 -15.38991 -15.03910 -14.87657 -14.56400 -14.22855 -13.80546 -13.50585 -13.22651 -13.13414 -12.87163 -12.70634 -12.56190 -12.14111 -11.87606 -11.62725 -11.46259 -11.24673 -11.17733 -11.01130 -10.97142 -10.93189 -10.78000 -10.66848 -10.51198 -10.48720 -10.37447 -10.22730 -10.15340 -9.65860 -9.05178 -8.83696 -8.81481 -8.53242 -8.48302 -7.76608 -6.12662 -4.19255 1.46093 1.48707 3.24418 3.32025 3.33461 3.46495 3.86867 4.15439 4.40416 4.62260 4.70473 4.89266 4.98556 5.02781 5.10558 5.20745 5.22590 5.42593 5.51242 5.57073 5.58328 5.63194 5.71766 5.72803 5.76594 5.79154 5.97250 6.03768 6.05673 6.17652 6.19142 6.26519 6.36869 6.37239 6.42108 6.52933 6.55030 6.56400 6.57887 6.63785 6.83360 7.01862 7.11169 7.19803 7.36264 7.48447 7.63839 7.74896 7.88609 8.11831 8.73820 8.82261 9.21508 9.48086 10.95076 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.004760 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.975587 B = 5881.447197 C = 7890.224853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.513 3.487 15 O -0.548 6.548 16 C -0.114 4.114 17 H 0.083 0.917 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.065 4.065 22 H 0.075 0.925 23 C -0.092 4.092 24 C -0.064 4.064 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.120 4.120 29 C -0.117 4.117 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.386 0.614 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 12.078 11.153 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.298 3.702 15 O -0.427 6.427 16 C -0.136 4.136 17 H 0.101 0.899 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.084 4.084 22 H 0.093 0.907 23 C -0.129 4.129 24 C -0.064 4.064 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.151 4.151 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.218 0.782 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.695 11.950 10.243 17.104 hybrid contribution 1.505 -0.165 0.263 1.537 sum -5.190 11.785 10.506 16.619 Atomic orbital electron populations 1.21836 0.98152 0.98010 1.01425 1.21853 0.92833 1.00049 1.01261 1.18742 0.93855 0.88755 0.81842 0.92840 1.21207 0.90656 1.43174 1.02176 0.92214 1.24874 0.98382 0.95111 0.95129 1.69961 1.35365 1.42769 1.03715 0.86525 0.85283 0.78379 0.77467 1.20611 1.21143 1.19860 1.46576 1.15086 1.55811 1.18339 1.20122 0.82465 0.78552 0.89053 1.90642 1.52822 1.60149 1.39112 1.22062 0.98215 0.96099 0.97212 0.89901 1.22329 0.93449 0.96962 1.02168 1.22476 0.99239 0.95128 0.99201 1.22444 0.94603 0.97564 1.00632 1.21583 0.97088 0.92510 0.97209 0.90698 1.21009 1.02603 0.91569 0.97694 1.19968 0.93704 0.95825 0.96939 1.21101 0.99399 0.92890 1.00017 1.21100 0.96771 0.95826 1.00284 1.21067 0.94251 0.99241 1.00529 1.21111 0.99255 0.93359 1.00079 1.21130 0.96419 0.95834 1.00103 0.94094 0.92996 0.95968 0.89979 0.94913 0.92643 0.78198 0.91929 0.89529 0.91845 0.91666 0.91940 0.91220 0.89686 0.89604 0.86219 0.86485 0.86613 0.86414 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.49 37.16 0.32 -2.68 16 2 C -0.12 -2.88 5.49 -26.73 -0.15 -3.02 16 3 C 0.27 6.59 2.13 -69.08 -0.15 6.45 16 4 H 0.05 1.54 7.56 -51.93 -0.39 1.15 16 5 C -0.53 -13.82 8.67 -34.44 -0.30 -14.12 16 6 H 0.06 1.49 7.72 -52.48 -0.41 1.08 16 7 C 0.07 1.83 5.24 -17.82 -0.09 1.74 16 8 N -0.88 -24.76 11.95 55.43 0.66 -24.10 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.05 4.55 -54.93 -0.25 -14.30 16 14 C 0.51 9.48 3.21 -10.98 -0.04 9.45 16 15 O -0.55 -12.00 12.07 5.56 0.07 -11.93 16 16 C -0.11 -1.60 3.29 -90.66 -0.30 -1.90 16 17 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.11 -1.45 6.31 -25.08 -0.16 -1.61 16 19 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 20 C -0.11 -1.33 5.39 -25.07 -0.14 -1.46 16 21 C -0.06 -0.84 2.93 -89.50 -0.26 -1.10 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.09 -1.39 3.54 -27.88 -0.10 -1.49 16 24 C -0.06 -0.90 4.87 -104.62 -0.51 -1.41 16 25 C -0.12 -1.49 8.84 -39.59 -0.35 -1.84 16 26 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 28 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 29 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 30 H 0.04 0.86 5.67 -51.93 -0.29 0.57 16 31 H 0.05 1.22 7.77 -51.93 -0.40 0.82 16 32 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.08 2.17 6.64 -51.93 -0.34 1.82 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.39 6.75 8.53 -40.82 -0.35 6.40 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.33 6.91 -51.93 -0.36 0.98 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.86 6.80 -51.93 -0.35 0.50 16 43 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 44 H 0.09 1.51 6.94 -51.93 -0.36 1.15 16 45 H 0.12 1.44 7.30 -52.49 -0.38 1.06 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -29.13 379.03 -11.01 -40.14 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.21 Total: 10.88 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.97 Total: -21.95 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.41 Total: -38.39 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.13 -11.01 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597506988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.787 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds