Wall clock time and date at job start Tue Mar 31 2020 11:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 H 1.09003 * 109.47202 * 303.75036 * 3 2 1 5 5 C 1.50695 * 109.46956 * 183.74635 * 3 2 1 6 6 H 1.08009 * 120.00131 * 245.25448 * 5 3 2 7 7 C 1.37874 * 120.00362 * 65.26085 * 5 3 2 8 8 N 1.31517 * 119.99771 * 5.41481 * 7 5 3 9 9 Si 1.86800 * 120.00401 * 185.41791 * 7 5 3 10 10 H 1.48509 * 109.46899 * 94.99458 * 9 7 5 11 11 H 1.48500 * 109.47056 * 214.99503 * 9 7 5 12 12 H 1.48499 * 109.47234 * 334.99684 * 9 7 5 13 13 N 1.46508 * 109.46873 * 63.74811 * 3 2 1 14 14 C 1.34779 * 119.99688 * 275.00060 * 13 3 2 15 15 O 1.21273 * 120.00076 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99484 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.05428 * 333.15687 * 16 14 13 18 18 C 1.54261 * 110.03093 * 211.73608 * 16 14 13 19 19 C 1.54880 * 104.19790 * 217.10740 * 18 16 14 20 20 C 1.54895 * 102.75006 * 37.94425 * 19 18 16 21 21 C 1.53871 * 110.02913 * 94.57233 * 16 14 13 22 22 H 1.09001 * 110.03066 * 238.56548 * 21 16 14 23 23 C 1.52996 * 110.07649 * 359.97438 * 21 16 14 24 24 C 1.50707 * 109.47350 * 183.30714 * 23 21 16 25 25 C 1.38225 * 119.99953 * 269.72786 * 24 23 21 26 26 C 1.38238 * 119.99994 * 179.80916 * 25 24 23 27 27 C 1.38237 * 119.99499 * 0.39696 * 26 25 24 28 28 C 1.38231 * 120.00465 * 359.85305 * 27 26 25 29 29 C 1.38235 * 119.99761 * 359.96431 * 28 27 26 30 30 H 1.08996 * 109.47445 * 299.99433 * 1 2 3 31 31 H 1.08998 * 109.47343 * 59.99891 * 1 2 3 32 32 H 1.09007 * 109.46812 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47445 * 240.00567 * 2 1 3 34 34 H 1.08998 * 109.47343 * 120.00109 * 2 1 3 35 35 H 0.96998 * 120.00168 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99954 * 95.00003 * 13 3 2 37 37 H 1.09001 * 110.48387 * 98.42879 * 18 16 14 38 38 H 1.09005 * 110.59906 * 335.84247 * 18 16 14 39 39 H 1.09006 * 110.75644 * 279.63162 * 19 18 16 40 40 H 1.09001 * 110.75646 * 156.25838 * 19 18 16 41 41 H 1.09003 * 110.48677 * 203.38045 * 20 19 18 42 42 H 1.08994 * 110.59696 * 80.78925 * 20 19 18 43 43 H 1.09002 * 109.47424 * 303.30835 * 23 21 16 44 44 H 1.09003 * 109.47388 * 63.30650 * 23 21 16 45 45 H 1.07999 * 120.00002 * 359.97438 * 25 24 23 46 46 H 1.07996 * 120.00302 * 180.23113 * 26 25 24 47 47 H 1.08010 * 119.99497 * 179.83482 * 27 26 25 48 48 H 1.08002 * 120.00315 * 179.97438 * 28 27 26 49 49 H 1.07997 * 120.00194 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6228 1.9754 -0.8545 5 6 3.5440 1.4436 -0.0928 6 1 4.1357 1.8169 0.7301 7 6 4.1650 0.9681 -1.2283 8 7 3.4465 0.6132 -2.2711 9 14 6.0269 0.8278 -1.2855 10 1 6.4309 -0.5525 -0.9153 11 1 6.5042 1.1319 -2.6584 12 1 6.6256 1.7923 -0.3283 13 7 1.6267 2.1066 1.2388 14 6 0.4072 2.6742 1.3247 15 8 -0.3480 2.6348 0.3767 16 6 -0.0176 3.3577 2.5988 17 1 0.5081 2.9234 3.4492 18 6 -1.5416 3.2165 2.7914 19 6 -1.9742 4.5712 3.4050 20 6 -1.0791 5.5880 2.6539 21 6 0.2765 4.8655 2.5114 22 1 0.9449 5.1630 3.3194 23 6 0.9088 5.1996 1.1588 24 6 1.2654 6.6634 1.1188 25 6 0.3481 7.5856 0.6512 26 6 0.6737 8.9287 0.6182 27 6 1.9197 9.3484 1.0452 28 6 2.8389 8.4255 1.5080 29 6 2.5118 7.0829 1.5446 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8833 0.2784 -3.0698 36 1 2.2307 2.1377 1.9972 37 1 -1.7654 2.3986 3.4764 38 1 -2.0361 3.0564 1.8332 39 1 -1.7695 4.5933 4.4754 40 1 -3.0285 4.7654 3.2080 41 1 -0.9653 6.5008 3.2386 42 1 -1.4959 5.8140 1.6725 43 1 1.8101 4.6023 1.0215 44 1 0.2001 4.9764 0.3613 45 1 -0.6239 7.2572 0.3141 46 1 -0.0442 9.6497 0.2563 47 1 2.1751 10.3975 1.0169 48 1 3.8125 8.7534 1.8413 49 1 3.2298 6.3619 1.9065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597506988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:37 Heat of formation + Delta-G solvation = -58.157764 kcal Electronic energy + Delta-G solvation = -27315.627264 eV Core-core repulsion = 23819.330207 eV Total energy + Delta-G solvation = -3496.297057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50821 -40.04391 -38.40145 -36.66229 -34.27105 -33.98112 -32.90106 -31.75367 -30.40703 -29.82371 -28.67403 -26.16430 -25.03307 -23.48207 -23.00469 -22.24105 -21.36328 -21.31996 -20.28013 -18.54975 -17.85611 -17.29218 -17.10316 -16.87692 -16.25661 -16.06289 -15.81025 -15.75325 -15.22347 -14.61740 -14.53719 -14.44728 -14.22351 -14.10648 -13.66113 -13.60067 -13.37422 -13.26664 -13.02265 -12.91916 -12.64981 -12.60073 -12.35404 -12.18001 -12.02175 -11.91359 -11.85973 -11.72276 -11.61984 -11.53027 -11.42986 -11.38228 -11.04742 -10.57098 -10.37056 -9.78168 -9.54913 -9.51248 -8.17934 -6.31873 0.49719 0.53636 1.42534 1.42931 1.53381 1.97407 2.36950 2.73118 2.92589 3.13868 3.56476 3.65398 3.79471 4.02075 4.04590 4.19950 4.30879 4.35780 4.40910 4.47458 4.50457 4.54896 4.56430 4.60149 4.64304 4.72173 4.74290 4.75650 4.82621 4.97385 5.03236 5.06574 5.10746 5.19527 5.23849 5.25184 5.26215 5.30426 5.41365 5.44755 5.54700 5.57142 5.62276 5.65287 5.66509 5.77951 5.80689 5.98015 6.12097 6.17133 6.78416 7.10060 7.35724 7.70335 8.90191 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.004760 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.975587 B = 5881.447197 C = 7890.224853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.281 3.719 4 H -0.002 1.002 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.709 5.709 14 C 0.512 3.488 15 O -0.586 6.586 16 C -0.108 4.108 17 H 0.110 0.890 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.060 4.060 22 H 0.095 0.905 23 C -0.080 4.080 24 C -0.082 4.082 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.123 4.123 29 C -0.133 4.133 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.400 0.600 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 13.731 14.013 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.177 3.823 4 H 0.016 0.984 5 C -0.582 4.582 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.357 5.357 14 C 0.300 3.700 15 O -0.467 6.467 16 C -0.129 4.129 17 H 0.128 0.872 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.079 4.079 22 H 0.113 0.887 23 C -0.118 4.118 24 C -0.082 4.082 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.141 4.141 29 C -0.151 4.151 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.234 0.766 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.136 0.864 46 H 0.159 0.841 47 H 0.163 0.837 48 H 0.158 0.842 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.100 13.615 13.147 19.885 hybrid contribution 1.287 -0.612 -0.688 1.583 sum -4.813 13.003 12.459 18.640 Atomic orbital electron populations 1.21662 0.96726 0.99131 1.00400 1.21705 0.94009 0.99318 1.00287 1.18264 0.93194 0.88768 0.82073 0.98393 1.21564 0.91489 1.42654 1.02451 0.91193 1.25739 1.03029 0.94807 0.94760 1.70117 1.37302 1.43867 1.04343 0.85462 0.79628 0.78736 0.77315 1.19830 1.21484 1.18650 1.46353 1.16081 1.56009 1.17271 1.20923 0.81306 0.77519 0.90226 1.90630 1.53814 1.61235 1.41067 1.22141 0.99354 0.96402 0.95051 0.87153 1.22334 0.92158 0.99253 1.01277 1.22458 0.99561 0.92768 1.00145 1.22403 0.93683 0.98379 1.00371 1.21621 0.98249 0.91751 0.96244 0.88697 1.20782 1.00349 0.92577 0.98065 1.19909 0.94687 0.94993 0.98603 1.21196 0.99363 0.93699 1.00428 1.21416 0.97613 0.95468 0.99563 1.21454 0.93691 1.00642 0.99166 1.21411 1.00434 0.92687 0.99535 1.21237 0.96109 0.96900 1.00900 0.93384 0.95703 0.93614 0.92955 0.93611 0.92780 0.76605 0.90260 0.92593 0.89413 0.90633 0.90296 0.92768 0.92565 0.93196 0.86357 0.84080 0.83711 0.84212 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.49 71.98 0.61 -4.87 16 2 C -0.11 -5.60 5.49 30.59 0.17 -5.43 16 3 C 0.28 14.35 2.13 44.24 0.09 14.45 16 4 H 0.00 -0.12 7.56 -2.39 -0.02 -0.13 16 5 C -0.54 -28.77 8.67 25.60 0.22 -28.55 16 6 H 0.07 3.47 7.72 -2.91 -0.02 3.45 16 7 C 0.02 0.91 5.24 84.65 0.44 1.35 16 8 N -0.92 -53.72 11.95 21.45 0.26 -53.46 16 9 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.71 -28.75 4.55 -446.08 -2.03 -30.78 16 14 C 0.51 19.55 3.21 87.66 0.28 19.83 16 15 O -0.59 -27.29 12.07 -3.01 -0.04 -27.33 16 16 C -0.11 -2.94 3.29 -10.82 -0.04 -2.97 16 17 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.11 -2.79 6.31 31.66 0.20 -2.59 16 19 C -0.11 -2.11 6.91 31.88 0.22 -1.89 16 20 C -0.11 -2.40 5.39 31.67 0.17 -2.23 16 21 C -0.06 -1.50 2.93 -10.07 -0.03 -1.53 16 22 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 23 C -0.08 -2.56 3.54 29.85 0.11 -2.45 16 24 C -0.08 -2.32 4.87 -19.87 -0.10 -2.42 16 25 C -0.13 -3.30 8.84 22.27 0.20 -3.10 16 26 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 27 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 28 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 29 C -0.13 -3.49 9.70 22.27 0.22 -3.27 16 30 H 0.05 2.06 5.67 -2.39 -0.01 2.04 16 31 H 0.02 1.21 7.77 -2.39 -0.02 1.19 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.05 2.88 6.64 -2.39 -0.02 2.86 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.40 13.90 8.53 -92.71 -0.79 13.11 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.75 6.91 -2.38 -0.02 1.74 16 39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.34 6.80 -2.39 -0.02 1.33 16 43 H 0.06 2.07 6.92 -2.39 -0.02 2.05 16 44 H 0.05 1.92 6.94 -2.39 -0.02 1.90 16 45 H 0.12 2.95 7.30 -2.91 -0.02 2.93 16 46 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 47 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 48 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 49 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -67.19 379.03 3.79 -63.40 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.14 Total: 36.45 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.44 Total: -32.85 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.77 Total: -84.25 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.04 Total: -27.33 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -67.19 3.79 -63.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597506988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.246 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds