Wall clock time and date at job start Tue Mar 31 2020 11:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47674 * 2 1 4 4 H 1.09005 * 109.46990 * 305.53024 * 3 2 1 5 5 C 1.50691 * 109.47767 * 185.52828 * 3 2 1 6 6 H 1.07994 * 120.00229 * 245.60395 * 5 3 2 7 7 C 1.37881 * 119.99986 * 65.59955 * 5 3 2 8 8 N 1.31516 * 119.99946 * 196.25626 * 7 5 3 9 9 Si 1.86801 * 119.99855 * 16.25099 * 7 5 3 10 10 H 1.48499 * 109.47046 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47209 * 60.00329 * 9 7 5 12 12 H 1.48499 * 109.47445 * 300.00139 * 9 7 5 13 13 N 1.46506 * 109.46989 * 65.52445 * 3 2 1 14 14 C 1.34772 * 120.00327 * 275.00445 * 13 3 2 15 15 O 1.21286 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00194 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.43464 * 61.08575 * 16 14 13 18 18 C 1.54270 * 110.48716 * 298.54386 * 16 14 13 19 19 C 1.53869 * 106.60112 * 217.71137 * 18 16 14 20 20 C 1.54263 * 106.59801 * 0.02562 * 19 18 16 21 21 C 1.54887 * 104.19763 * 23.61109 * 20 19 18 22 22 H 1.08994 * 110.75527 * 80.37111 * 21 20 19 23 23 C 1.52998 * 110.75554 * 203.74351 * 21 20 19 24 24 C 1.50697 * 109.47022 * 288.32567 * 23 21 20 25 25 C 1.38241 * 120.00191 * 269.72852 * 24 23 21 26 26 C 1.38239 * 120.00081 * 179.76548 * 25 24 23 27 27 C 1.38238 * 119.99750 * 0.50995 * 26 25 24 28 28 C 1.38234 * 119.99974 * 359.74046 * 27 26 25 29 29 C 1.38234 * 120.00347 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46936 * 300.00059 * 1 2 3 31 31 H 1.09001 * 109.47125 * 59.99469 * 1 2 3 32 32 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46936 * 239.99941 * 2 1 3 34 34 H 1.09003 * 109.47578 * 120.00257 * 2 1 3 35 35 H 0.96994 * 120.00032 * 354.84634 * 8 7 5 36 36 H 0.96998 * 119.99403 * 95.00426 * 13 3 2 37 37 H 1.09001 * 110.03016 * 337.00172 * 18 16 14 38 38 H 1.09002 * 110.02703 * 98.42316 * 18 16 14 39 39 H 1.08996 * 110.03012 * 119.28500 * 19 18 16 40 40 H 1.09004 * 110.03328 * 240.66613 * 19 18 16 41 41 H 1.09004 * 110.48695 * 142.29233 * 20 19 18 42 42 H 1.09000 * 110.48611 * 264.92931 * 20 19 18 43 43 H 1.08989 * 109.47201 * 48.32865 * 23 21 20 44 44 H 1.09004 * 109.46808 * 168.32858 * 23 21 20 45 45 H 1.08003 * 119.99544 * 359.97438 * 25 24 23 46 46 H 1.07994 * 119.99896 * 180.23364 * 26 25 24 47 47 H 1.07997 * 119.99828 * 179.72306 * 27 26 25 48 48 H 1.08003 * 119.99464 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00283 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4447 -0.1369 6 1 4.1565 1.8042 0.6743 7 6 4.1279 0.9876 -1.2977 8 7 5.4080 0.6863 -1.3127 9 14 3.1050 0.7961 -2.8490 10 1 3.9647 0.2917 -3.9497 11 1 2.5331 2.1125 -3.2304 12 1 2.0038 -0.1685 -2.6000 13 7 1.6634 2.0936 1.2572 14 6 0.4472 2.6602 1.3846 15 8 -0.3353 2.6314 0.4584 16 6 0.0596 3.3295 2.6780 17 1 0.7320 4.1599 2.8932 18 6 0.0703 2.3116 3.8371 19 6 -1.1166 2.6703 4.7482 20 6 -1.8076 3.8932 4.1107 21 6 -1.4092 3.8183 2.6158 22 1 -2.0337 3.0998 2.0851 23 6 -1.4935 5.1991 1.9623 24 6 -2.9396 5.5931 1.8055 25 6 -3.6238 5.2656 0.6498 26 6 -4.9517 5.6228 0.5080 27 6 -5.5924 6.3167 1.5174 28 6 -4.9067 6.6487 2.6709 29 6 -3.5802 6.2873 2.8148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.9553 0.8558 -0.5301 36 1 2.2894 2.1170 1.9977 37 1 -0.0501 1.3007 3.4474 38 1 1.0047 2.3889 4.3931 39 1 -1.8131 1.8335 4.8007 40 1 -0.7584 2.9208 5.7468 41 1 -2.8896 3.8207 4.2212 42 1 -1.4386 4.8162 4.5581 43 1 -0.9839 5.9299 2.5901 44 1 -1.0174 5.1670 0.9823 45 1 -3.1218 4.7277 -0.1408 46 1 -5.4873 5.3636 -0.3933 47 1 -6.6285 6.5996 1.4048 48 1 -5.4072 7.1912 3.4593 49 1 -3.0444 6.5471 3.7158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597506989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:44 Heat of formation + Delta-G solvation = -46.990275 kcal Electronic energy + Delta-G solvation = -26902.335617 eV Core-core repulsion = 23406.522819 eV Total energy + Delta-G solvation = -3495.812798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09456 -39.11097 -37.35509 -35.11379 -33.23891 -32.37338 -31.48458 -30.93044 -29.35719 -28.94530 -26.96821 -25.28149 -22.63076 -22.45774 -21.84733 -21.21989 -20.17909 -19.67090 -19.31241 -17.82493 -16.87830 -16.40076 -15.57121 -15.44895 -15.14388 -15.04988 -14.58777 -14.33865 -13.63347 -13.50906 -13.41027 -13.21643 -13.03023 -12.83872 -12.64165 -12.50719 -12.34232 -12.15939 -11.77228 -11.55934 -11.43174 -11.17719 -11.07834 -10.94764 -10.80135 -10.68038 -10.55861 -10.50624 -10.43541 -10.39425 -9.87985 -9.56128 -9.09351 -8.95914 -8.94399 -8.68658 -8.33722 -8.03019 -6.57482 -4.21490 1.32188 1.36294 3.31315 3.38657 3.44232 3.59171 3.74125 4.03355 4.41745 4.43869 4.63790 4.76371 4.86143 4.87995 4.96041 5.10472 5.16942 5.25173 5.39577 5.42533 5.47497 5.48067 5.54978 5.61530 5.64904 5.67214 5.84470 5.86792 5.91964 6.02420 6.06654 6.07810 6.10599 6.12283 6.20998 6.28314 6.31384 6.41597 6.47485 6.48640 6.69543 6.71347 6.80756 6.98010 6.98332 7.07438 7.38333 7.46231 7.68502 8.23827 8.54053 8.72386 9.05144 9.47788 10.82987 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003464 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.991108 B = 8080.487664 C = 8955.321006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.247 3.753 4 H 0.040 0.960 5 C -0.616 4.616 6 H 0.060 0.940 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.549 6.549 16 C -0.113 4.113 17 H 0.095 0.905 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.060 4.060 22 H 0.090 0.910 23 C -0.075 4.075 24 C -0.069 4.069 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.119 4.119 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.268 0.732 36 H 0.391 0.609 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.575 8.814 11.456 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.058 0.942 5 C -0.653 4.653 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.207 1.207 12 H -0.195 1.195 13 N -0.349 5.349 14 C 0.293 3.707 15 O -0.428 6.428 16 C -0.135 4.135 17 H 0.113 0.887 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.079 4.079 22 H 0.108 0.892 23 C -0.112 4.112 24 C -0.069 4.069 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.149 4.149 28 C -0.142 4.142 29 C -0.137 4.137 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.144 0.856 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.019 8.247 9.199 21.848 hybrid contribution 0.383 0.528 2.033 2.135 sum -17.636 8.776 11.233 22.676 Atomic orbital electron populations 1.21875 0.97391 0.98734 1.01969 1.22352 0.93781 0.99900 1.01703 1.19009 0.95638 0.88490 0.82497 0.94202 1.22107 0.89851 1.49339 1.04053 0.92153 1.25676 0.97533 0.92394 1.01203 1.70877 1.07096 1.41054 1.34283 0.84111 0.75487 0.77692 0.75883 1.20974 1.20658 1.19512 1.46262 1.14738 1.56054 1.17873 1.20326 0.82425 0.79007 0.88938 1.90638 1.50955 1.60035 1.41196 1.22270 0.98387 0.98918 0.93916 0.88686 1.22093 0.98893 0.99009 0.95276 1.22097 0.97098 0.98196 0.98555 1.22458 1.00174 0.97933 0.95103 1.21891 0.94501 0.96353 0.95158 0.89207 1.20636 0.92049 0.96152 1.02341 1.19924 0.96210 0.96879 0.93868 1.21222 0.94487 0.99490 0.97812 1.21162 0.94974 0.98704 0.98955 1.21093 0.99725 0.99763 0.94345 1.21090 0.94781 1.00536 0.97764 1.21043 0.94815 0.99182 0.98657 0.93215 0.93075 0.95252 0.91442 0.93217 0.92152 0.77620 0.91258 0.91236 0.91890 0.91845 0.91619 0.91669 0.91332 0.90111 0.85615 0.86308 0.86550 0.86488 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.55 16 2 C -0.14 -3.09 5.27 -26.73 -0.14 -3.23 16 3 C 0.25 5.83 1.82 -69.08 -0.13 5.70 16 4 H 0.04 1.03 6.26 -51.93 -0.32 0.71 16 5 C -0.62 -16.54 9.01 -34.44 -0.31 -16.85 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 9 Si 1.04 25.15 26.27 -169.99 -4.47 20.69 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.08 5.66 56.52 0.32 -5.76 16 13 N -0.70 -13.78 4.97 -54.93 -0.27 -14.05 16 14 C 0.51 9.14 5.60 -10.99 -0.06 9.08 16 15 O -0.55 -11.42 12.72 5.55 0.07 -11.35 16 16 C -0.11 -1.52 2.70 -90.10 -0.24 -1.76 16 17 H 0.10 1.16 8.05 -51.93 -0.42 0.75 16 18 C -0.11 -1.34 6.30 -25.61 -0.16 -1.50 16 19 C -0.12 -1.20 6.80 -25.62 -0.17 -1.38 16 20 C -0.12 -1.19 5.53 -25.08 -0.14 -1.33 16 21 C -0.06 -0.75 1.87 -88.61 -0.17 -0.92 16 22 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16 23 C -0.07 -0.91 4.85 -27.89 -0.14 -1.04 16 24 C -0.07 -0.82 4.96 -104.62 -0.52 -1.34 16 25 C -0.11 -1.40 9.70 -39.58 -0.38 -1.78 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 29 C -0.12 -1.24 9.17 -39.58 -0.36 -1.60 16 30 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 31 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.58 4.73 -51.93 -0.25 1.33 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 36 H 0.39 6.98 8.51 -40.82 -0.35 6.63 16 37 H 0.07 0.91 7.83 -51.93 -0.41 0.50 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.58 7.93 -51.93 -0.41 0.17 16 43 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 44 H 0.08 1.16 7.90 -51.93 -0.41 0.74 16 45 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -30.26 381.12 -10.43 -40.69 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.37 Total: 8.83 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -3.89 Total: -24.51 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.49 Total: -40.09 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.47 Total: 20.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.26 -10.43 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597506989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.300 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds