Wall clock time and date at job start Tue Mar 31 2020 11:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47674 * 2 1 4 4 H 1.09005 * 109.46990 * 305.53024 * 3 2 1 5 5 C 1.50691 * 109.47767 * 185.52828 * 3 2 1 6 6 H 1.07994 * 120.00229 * 245.60395 * 5 3 2 7 7 C 1.37881 * 119.99986 * 65.59955 * 5 3 2 8 8 N 1.31516 * 119.99946 * 196.25626 * 7 5 3 9 9 Si 1.86801 * 119.99855 * 16.25099 * 7 5 3 10 10 H 1.48499 * 109.47046 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47209 * 60.00329 * 9 7 5 12 12 H 1.48499 * 109.47445 * 300.00139 * 9 7 5 13 13 N 1.46506 * 109.46989 * 65.52445 * 3 2 1 14 14 C 1.34772 * 120.00327 * 275.00445 * 13 3 2 15 15 O 1.21286 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00194 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.43464 * 61.08575 * 16 14 13 18 18 C 1.54270 * 110.48716 * 298.54386 * 16 14 13 19 19 C 1.53869 * 106.60112 * 217.71137 * 18 16 14 20 20 C 1.54263 * 106.59801 * 0.02562 * 19 18 16 21 21 C 1.54887 * 104.19763 * 23.61109 * 20 19 18 22 22 H 1.08994 * 110.75527 * 80.37111 * 21 20 19 23 23 C 1.52998 * 110.75554 * 203.74351 * 21 20 19 24 24 C 1.50697 * 109.47022 * 288.32567 * 23 21 20 25 25 C 1.38241 * 120.00191 * 269.72852 * 24 23 21 26 26 C 1.38239 * 120.00081 * 179.76548 * 25 24 23 27 27 C 1.38238 * 119.99750 * 0.50995 * 26 25 24 28 28 C 1.38234 * 119.99974 * 359.74046 * 27 26 25 29 29 C 1.38234 * 120.00347 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46936 * 300.00059 * 1 2 3 31 31 H 1.09001 * 109.47125 * 59.99469 * 1 2 3 32 32 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46936 * 239.99941 * 2 1 3 34 34 H 1.09003 * 109.47578 * 120.00257 * 2 1 3 35 35 H 0.96994 * 120.00032 * 354.84634 * 8 7 5 36 36 H 0.96998 * 119.99403 * 95.00426 * 13 3 2 37 37 H 1.09001 * 110.03016 * 337.00172 * 18 16 14 38 38 H 1.09002 * 110.02703 * 98.42316 * 18 16 14 39 39 H 1.08996 * 110.03012 * 119.28500 * 19 18 16 40 40 H 1.09004 * 110.03328 * 240.66613 * 19 18 16 41 41 H 1.09004 * 110.48695 * 142.29233 * 20 19 18 42 42 H 1.09000 * 110.48611 * 264.92931 * 20 19 18 43 43 H 1.08989 * 109.47201 * 48.32865 * 23 21 20 44 44 H 1.09004 * 109.46808 * 168.32858 * 23 21 20 45 45 H 1.08003 * 119.99544 * 359.97438 * 25 24 23 46 46 H 1.07994 * 119.99896 * 180.23364 * 26 25 24 47 47 H 1.07997 * 119.99828 * 179.72306 * 27 26 25 48 48 H 1.08003 * 119.99464 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00283 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4447 -0.1369 6 1 4.1565 1.8042 0.6743 7 6 4.1279 0.9876 -1.2977 8 7 5.4080 0.6863 -1.3127 9 14 3.1050 0.7961 -2.8490 10 1 3.9647 0.2917 -3.9497 11 1 2.5331 2.1125 -3.2304 12 1 2.0038 -0.1685 -2.6000 13 7 1.6634 2.0936 1.2572 14 6 0.4472 2.6602 1.3846 15 8 -0.3353 2.6314 0.4584 16 6 0.0596 3.3295 2.6780 17 1 0.7320 4.1599 2.8932 18 6 0.0703 2.3116 3.8371 19 6 -1.1166 2.6703 4.7482 20 6 -1.8076 3.8932 4.1107 21 6 -1.4092 3.8183 2.6158 22 1 -2.0337 3.0998 2.0851 23 6 -1.4935 5.1991 1.9623 24 6 -2.9396 5.5931 1.8055 25 6 -3.6238 5.2656 0.6498 26 6 -4.9517 5.6228 0.5080 27 6 -5.5924 6.3167 1.5174 28 6 -4.9067 6.6487 2.6709 29 6 -3.5802 6.2873 2.8148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.9553 0.8558 -0.5301 36 1 2.2894 2.1170 1.9977 37 1 -0.0501 1.3007 3.4474 38 1 1.0047 2.3889 4.3931 39 1 -1.8131 1.8335 4.8007 40 1 -0.7584 2.9208 5.7468 41 1 -2.8896 3.8207 4.2212 42 1 -1.4386 4.8162 4.5581 43 1 -0.9839 5.9299 2.5901 44 1 -1.0174 5.1670 0.9823 45 1 -3.1218 4.7277 -0.1408 46 1 -5.4873 5.3636 -0.3933 47 1 -6.6285 6.5996 1.4048 48 1 -5.4072 7.1912 3.4593 49 1 -3.0444 6.5471 3.7158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597506989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:43 Heat of formation + Delta-G solvation = -62.846973 kcal Electronic energy + Delta-G solvation = -26903.023215 eV Core-core repulsion = 23406.522819 eV Total energy + Delta-G solvation = -3496.500396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32915 -40.11467 -38.52034 -36.86280 -34.51816 -34.03515 -33.13803 -31.73288 -30.39162 -29.99298 -28.74463 -26.20431 -24.35857 -23.43812 -23.19584 -22.10365 -21.56459 -20.88550 -20.72935 -19.68853 -18.08357 -17.46271 -17.22925 -16.57176 -16.05918 -15.99411 -15.91897 -15.60132 -15.27922 -14.58480 -14.55043 -14.51127 -14.34448 -14.20876 -14.05600 -13.94500 -13.56156 -13.54069 -13.18697 -12.72338 -12.59230 -12.48033 -12.42022 -12.30195 -12.02464 -11.88227 -11.80038 -11.76644 -11.48440 -11.44625 -11.39213 -11.27304 -11.10455 -10.51230 -10.48197 -9.77260 -9.74488 -9.51931 -8.80391 -6.45378 0.50629 0.54585 1.42432 1.47071 1.66484 1.86825 2.38707 2.56837 2.92391 2.99548 3.46458 3.68809 3.80933 4.01249 4.04379 4.21184 4.26753 4.30159 4.33247 4.38902 4.42264 4.49068 4.51742 4.56272 4.60664 4.63436 4.71743 4.74900 4.79604 4.86422 4.94704 5.01876 5.07451 5.11421 5.20334 5.20841 5.22822 5.27029 5.29734 5.31561 5.42323 5.53668 5.54920 5.63179 5.66815 5.69352 5.72096 5.83174 6.00472 6.18706 6.53000 6.93040 7.28389 7.53485 8.58699 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003464 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.991108 B = 8080.487664 C = 8955.321006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.253 3.747 4 H 0.018 0.982 5 C -0.611 4.611 6 H 0.039 0.961 7 C -0.005 4.005 8 N -0.930 5.930 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.245 1.245 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.579 6.579 16 C -0.107 4.107 17 H 0.113 0.887 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.057 4.057 22 H 0.058 0.942 23 C -0.069 4.069 24 C -0.082 4.082 25 C -0.139 4.139 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.120 4.120 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.258 0.742 36 H 0.400 0.600 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.882 9.820 13.855 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.173 4.173 3 C 0.148 3.852 4 H 0.036 0.964 5 C -0.649 4.649 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.565 5.565 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.170 1.170 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.459 6.459 16 C -0.128 4.128 17 H 0.131 0.869 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.076 4.076 22 H 0.077 0.923 23 C -0.107 4.107 24 C -0.082 4.082 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.234 0.766 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.147 0.853 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.338 9.258 11.636 25.194 hybrid contribution 1.078 0.279 1.318 1.725 sum -19.261 9.537 12.954 25.094 Atomic orbital electron populations 1.21741 0.95601 1.00134 1.01343 1.22235 0.95261 0.98528 1.01322 1.18681 0.93236 0.89563 0.83757 0.96393 1.22302 0.91657 1.47842 1.03099 0.94239 1.26768 0.97705 0.92193 1.03918 1.70974 1.08045 1.43449 1.34018 0.83725 0.75162 0.78510 0.73276 1.20769 1.20200 1.17003 1.46133 1.15841 1.56530 1.16852 1.21147 0.81196 0.78066 0.90282 1.90629 1.51617 1.60885 1.42795 1.22311 0.99279 0.99502 0.91728 0.86886 1.22114 1.00805 0.97291 0.94852 1.22091 0.96149 0.98078 0.99125 1.22413 1.00533 0.99031 0.92666 1.21812 0.93203 0.95592 0.96968 0.92331 1.20562 0.92565 0.96617 1.00926 1.19949 0.96016 0.97853 0.94369 1.21223 0.95594 1.00872 0.98075 1.21358 0.94449 0.98990 1.00044 1.21435 1.00919 0.98847 0.93942 1.21483 0.94549 0.99808 0.98247 1.21283 0.95344 0.98372 0.98758 0.93209 0.94362 0.92751 0.92553 0.92824 0.93270 0.76573 0.93074 0.89530 0.91974 0.89491 0.91240 0.89557 0.89298 0.93386 0.87930 0.85310 0.84091 0.83602 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.53 71.98 0.61 -4.57 16 2 C -0.13 -5.95 5.27 30.59 0.16 -5.79 16 3 C 0.25 12.04 1.82 44.24 0.08 12.12 16 4 H 0.02 0.95 6.26 -2.38 -0.01 0.94 16 5 C -0.61 -33.50 9.01 25.60 0.23 -33.27 16 6 H 0.04 2.28 7.96 -2.91 -0.02 2.26 16 7 C -0.01 -0.30 5.32 84.66 0.45 0.15 16 8 N -0.93 -56.64 13.70 21.45 0.29 -56.35 16 9 Si 1.07 51.20 26.27 68.60 1.80 53.00 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.25 -10.73 5.66 99.48 0.56 -10.17 16 13 N -0.71 -27.82 4.97 -446.10 -2.22 -30.04 16 14 C 0.51 18.30 5.60 87.66 0.49 18.79 16 15 O -0.58 -24.74 12.72 -3.05 -0.04 -24.78 16 16 C -0.11 -2.74 2.70 -10.46 -0.03 -2.76 16 17 H 0.11 2.53 8.05 -2.39 -0.02 2.51 16 18 C -0.11 -2.38 6.30 31.32 0.20 -2.18 16 19 C -0.12 -1.93 6.80 31.32 0.21 -1.72 16 20 C -0.11 -1.85 5.53 31.67 0.18 -1.68 16 21 C -0.06 -1.37 1.87 -9.49 -0.02 -1.38 16 22 H 0.06 1.79 7.53 -2.39 -0.02 1.77 16 23 C -0.07 -1.66 4.85 29.85 0.14 -1.52 16 24 C -0.08 -1.90 4.96 -19.86 -0.10 -2.00 16 25 C -0.14 -3.60 9.70 22.27 0.22 -3.38 16 26 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 27 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 28 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 29 C -0.12 -2.17 9.17 22.27 0.20 -1.97 16 30 H 0.05 1.95 5.63 -2.39 -0.01 1.94 16 31 H 0.04 1.59 7.88 -2.39 -0.02 1.57 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 2.60 4.73 -2.39 -0.01 2.59 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 36 H 0.40 14.22 8.51 -92.71 -0.79 13.43 16 37 H 0.05 1.27 7.83 -2.39 -0.02 1.25 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.14 7.93 -2.39 -0.02 1.13 16 43 H 0.09 1.71 7.93 -2.39 -0.02 1.69 16 44 H 0.05 1.44 7.90 -2.38 -0.02 1.42 16 45 H 0.10 2.99 8.06 -2.91 -0.02 2.97 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 48 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 49 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.69 381.12 3.50 -64.19 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.05 Total: 31.61 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 3.70 Total: -37.62 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -1.92 Total: -86.39 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.80 Total: 53.00 kcal Total: -67.69 3.50 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597506989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.341 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds