Wall clock time and date at job start Tue Mar 31 2020 11:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 H 1.08997 * 109.47497 * 305.34407 * 3 2 1 5 5 C 1.53001 * 109.47415 * 185.33772 * 3 2 1 6 6 C 1.50702 * 109.46555 * 65.00234 * 5 3 2 7 7 C 1.38229 * 120.00235 * 269.72387 * 6 5 3 8 8 C 1.38232 * 120.00257 * 179.77242 * 7 6 5 9 9 C 1.38235 * 119.99724 * 0.47927 * 8 7 6 10 10 C 1.38232 * 120.00005 * 359.79961 * 9 8 7 11 11 C 1.38228 * 120.00215 * 359.94845 * 10 9 8 12 12 C 1.50703 * 109.46643 * 65.34037 * 3 2 1 13 13 O 1.21281 * 120.00213 * 34.00504 * 12 3 2 14 14 N 1.34777 * 119.99609 * 214.00030 * 12 3 2 15 15 C 1.46919 * 120.63659 * 354.78543 * 14 12 3 16 16 C 1.53193 * 108.77855 * 126.36525 * 15 14 12 17 17 C 1.53044 * 109.30940 * 54.63913 * 16 15 14 18 18 C 1.53039 * 109.53729 * 298.63623 * 17 16 15 19 19 H 1.09001 * 109.49667 * 301.37820 * 18 17 16 20 20 C 1.50704 * 109.49700 * 181.31675 * 18 17 16 21 21 H 1.07995 * 120.00015 * 239.99710 * 20 18 17 22 22 C 1.37876 * 119.99840 * 59.99987 * 20 18 17 23 23 N 1.31514 * 119.99988 * 359.97438 * 22 20 18 24 24 Si 1.86805 * 120.00061 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46908 * 89.99697 * 24 22 20 26 26 H 1.48496 * 109.47012 * 209.99985 * 24 22 20 27 27 H 1.48496 * 109.46737 * 330.00050 * 24 22 20 28 28 C 1.46933 * 120.62613 * 174.50803 * 14 12 3 29 29 H 1.09004 * 109.46862 * 174.97790 * 1 2 3 30 30 H 1.08993 * 109.47211 * 54.97720 * 1 2 3 31 31 H 1.08997 * 109.47007 * 294.97703 * 1 2 3 32 32 H 1.09001 * 109.47264 * 120.00447 * 2 1 3 33 33 H 1.09001 * 109.47462 * 240.00488 * 2 1 3 34 34 H 1.09002 * 109.47002 * 184.99974 * 5 3 2 35 35 H 1.08997 * 109.47433 * 305.00588 * 5 3 2 36 36 H 1.08007 * 119.99688 * 0.02562 * 7 6 5 37 37 H 1.08000 * 120.00062 * 180.26050 * 8 7 6 38 38 H 1.08004 * 119.99666 * 179.77370 * 9 8 7 39 39 H 1.08004 * 120.00022 * 179.97438 * 10 9 8 40 40 H 1.07996 * 120.00597 * 180.02562 * 11 10 9 41 41 H 1.09002 * 109.59376 * 246.15908 * 15 14 12 42 42 H 1.09003 * 109.58156 * 6.43870 * 15 14 12 43 43 H 1.09004 * 109.49779 * 174.59145 * 16 15 14 44 44 H 1.09002 * 109.49828 * 294.68663 * 16 15 14 45 45 H 1.08995 * 109.45767 * 58.65734 * 17 16 15 46 46 H 1.08998 * 109.46026 * 178.62801 * 17 16 15 47 47 H 0.97005 * 119.99628 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.58794 * 353.41583 * 28 14 12 49 49 H 1.09003 * 109.58879 * 113.84774 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9833 -0.8382 5 6 3.5641 1.4447 -0.1342 6 6 3.9506 0.8852 -1.4791 7 6 4.1765 -0.4708 -1.6246 8 6 4.5264 -0.9846 -2.8592 9 6 4.6602 -0.1411 -3.9462 10 6 4.4401 1.2156 -3.7994 11 6 4.0850 1.7288 -2.5659 12 6 1.6485 2.1136 1.2913 13 8 1.6064 1.4721 2.3197 14 7 1.3451 3.4267 1.3032 15 6 1.5009 4.2422 0.0911 16 6 0.1764 4.9562 -0.1965 17 6 -0.2517 5.7468 1.0421 18 6 -0.4653 4.7859 2.2139 19 1 -1.2250 4.0509 1.9478 20 6 -0.9180 5.5615 3.4242 21 1 -0.3280 5.5440 4.3285 22 6 -2.0856 6.2934 3.3768 23 7 -2.8039 6.3151 2.2754 24 14 -2.6464 7.2553 4.8767 25 1 -2.0773 8.6260 4.8269 26 1 -4.1292 7.3350 4.8877 27 1 -2.1784 6.5696 6.1079 28 6 0.8465 4.0687 2.5273 29 1 -0.3633 -1.0238 -0.0900 30 1 -0.3633 0.5897 -0.8415 31 1 -0.3633 0.4339 0.9315 32 1 1.8934 -0.5139 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 3.9352 2.4657 -0.0451 35 1 3.9991 0.8299 0.6537 36 1 4.0754 -1.1293 -0.7745 37 1 4.6987 -2.0446 -2.9738 38 1 4.9372 -0.5421 -4.9100 39 1 4.5450 1.8747 -4.6485 40 1 3.9126 2.7887 -2.4513 41 1 2.2879 4.9803 0.2458 42 1 1.7624 3.6001 -0.7500 43 1 0.3058 5.6384 -1.0368 44 1 -0.5888 4.2192 -0.4401 45 1 0.5251 6.4666 1.2997 46 1 -1.1814 6.2754 0.8320 47 1 -3.6251 6.8303 2.2420 48 1 0.6739 3.3120 3.2925 49 1 1.5790 4.7925 2.8847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:28 Heat of formation + Delta-G solvation = -36.308762 kcal Electronic energy + Delta-G solvation = -26998.423346 eV Core-core repulsion = 23503.073733 eV Total energy + Delta-G solvation = -3495.349613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25171 -39.19964 -36.98603 -35.25636 -33.45901 -32.11292 -31.31934 -31.05938 -30.33578 -28.77820 -25.37892 -24.99299 -24.04122 -22.89595 -21.95708 -21.63059 -21.10082 -19.33984 -18.17758 -17.29924 -16.80228 -16.21153 -15.51882 -15.32004 -15.13454 -14.73031 -14.62468 -14.02616 -13.73470 -13.62110 -13.47781 -13.36981 -13.12207 -12.88548 -12.73659 -12.64967 -12.39613 -12.01691 -11.99620 -11.80858 -11.26852 -11.16988 -11.08711 -10.95897 -10.87752 -10.82433 -10.72074 -10.60915 -10.22610 -9.95741 -9.81078 -9.46934 -9.20005 -9.05778 -8.85040 -8.77659 -8.39089 -7.88120 -6.02798 -4.09885 1.17705 1.23333 3.06572 3.28903 3.35836 3.39358 3.51896 3.67765 4.41816 4.52810 4.63258 4.82476 4.84156 4.92142 5.02948 5.06140 5.16459 5.27492 5.29651 5.34414 5.47553 5.53021 5.59412 5.62551 5.68350 5.74862 5.82946 5.87827 5.94908 6.02844 6.06155 6.15830 6.29456 6.32709 6.34279 6.34556 6.41056 6.45560 6.48693 6.50201 6.66478 6.81509 6.84047 6.98728 7.16837 7.33161 7.68335 7.91379 8.03854 8.07163 8.36954 8.68774 8.93965 9.55081 11.02636 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.003030 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.835529 B = 9237.629865 C = 9661.952849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.092 0.908 5 C -0.071 4.071 6 C -0.073 4.073 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.127 4.127 10 C -0.119 4.119 11 C -0.116 4.116 12 C 0.516 3.484 13 O -0.550 6.550 14 N -0.602 5.602 15 C 0.106 3.894 16 C -0.135 4.135 17 C -0.112 4.112 18 C 0.040 3.960 19 H 0.028 0.972 20 C -0.514 4.514 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C 0.118 3.882 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.260 0.740 48 H 0.077 0.923 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 -10.365 -13.400 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.110 0.890 5 C -0.109 4.109 6 C -0.073 4.073 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.145 4.145 10 C -0.137 4.137 11 C -0.134 4.134 12 C 0.304 3.696 13 O -0.428 6.428 14 N -0.334 5.334 15 C -0.017 4.017 16 C -0.174 4.174 17 C -0.150 4.150 18 C 0.021 3.979 19 H 0.046 0.954 20 C -0.552 4.552 21 H 0.075 0.925 22 C -0.138 4.138 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.003 4.003 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.114 0.886 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.209 -10.611 -12.904 21.297 hybrid contribution -0.444 0.741 0.594 1.049 sum 12.764 -9.869 -12.309 20.294 Atomic orbital electron populations 1.21787 0.95523 1.01456 1.02396 1.21487 0.96322 0.94209 1.02574 1.21425 0.95981 0.98151 0.96928 0.88965 1.20529 0.94023 1.02025 0.94277 1.19838 0.98534 0.93724 0.95224 1.21111 0.99585 0.94808 0.97668 1.21138 1.00005 0.99679 0.93010 1.21131 1.00898 0.93817 0.98703 1.21136 0.99731 0.95449 0.97354 1.21100 0.99978 0.99814 0.92544 1.20389 0.77163 0.81807 0.90265 1.90641 1.53770 1.63900 1.34521 1.48319 1.63799 1.08246 1.12996 1.21814 0.98789 0.94370 0.86746 1.22009 0.95800 0.99491 1.00055 1.21625 1.01993 0.98241 0.93147 1.18887 0.90662 0.93891 0.94449 0.95365 1.21076 1.07162 1.29043 0.97944 0.92505 1.24935 0.96332 0.96539 0.96005 1.69874 1.15049 1.41509 1.26325 0.86583 0.77764 0.80281 0.83332 1.20691 1.21241 1.19860 1.21893 0.97370 0.96222 0.84847 0.92776 0.92972 0.92089 0.90816 0.91214 0.90520 0.90092 0.85921 0.86228 0.86370 0.86162 0.85956 0.91960 0.90920 0.92528 0.92391 0.94619 0.88642 0.92988 0.90430 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.64 37.16 0.36 -1.76 16 2 C -0.11 -1.38 4.90 -26.73 -0.13 -1.51 16 3 C -0.10 -1.38 1.47 -91.77 -0.13 -1.51 16 4 H 0.09 1.16 5.97 -51.93 -0.31 0.85 16 5 C -0.07 -0.80 4.82 -27.88 -0.13 -0.94 16 6 C -0.07 -0.75 4.71 -104.62 -0.49 -1.24 16 7 C -0.11 -1.09 7.88 -39.59 -0.31 -1.40 16 8 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 9 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 11 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 12 C 0.52 9.13 5.85 -10.98 -0.06 9.06 16 13 O -0.55 -11.63 15.34 5.56 0.09 -11.54 16 14 N -0.60 -10.99 2.98 -173.03 -0.52 -11.51 16 15 C 0.11 1.61 6.31 -3.71 -0.02 1.59 16 16 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 17 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 18 C 0.04 0.98 2.24 -91.87 -0.21 0.78 16 19 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.86 11.31 55.43 0.63 -24.23 16 24 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.12 2.55 5.61 -3.93 -0.02 2.52 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 32 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 33 H 0.07 0.77 5.91 -51.93 -0.31 0.46 16 34 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.12 1.07 8.00 -52.48 -0.42 0.65 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.90 5.35 -51.93 -0.28 0.62 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 47 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.08 1.81 7.04 -51.93 -0.37 1.45 16 49 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -30.00 381.61 -10.73 -40.72 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.23 Total: 2.67 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.42 Total: -17.93 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.11 Total: -35.74 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.00 -10.73 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.413 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds