Wall clock time and date at job start Tue Mar 31 2020 12:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.26360 * 2 1 4 4 N 1.46536 * 110.29713 * 122.06170 * 2 1 3 5 5 C 1.34774 * 124.98397 * 299.00479 * 4 2 1 6 6 O 1.21289 * 119.99549 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00497 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47130 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47092 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47457 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47006 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00470 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99509 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99833 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47103 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47301 * 120.00142 * 15 13 11 18 18 H 1.48507 * 109.47180 * 240.00248 * 15 13 11 19 19 C 1.40040 * 109.92617 * 119.06157 * 4 2 1 20 20 C 1.39625 * 129.30634 * 179.97438 * 19 4 2 21 21 C 1.37845 * 120.28662 * 179.97438 * 20 19 4 22 22 C 1.38297 * 120.22048 * 359.97438 * 21 20 19 23 23 C 1.38221 * 119.82942 * 359.97438 * 22 21 20 24 24 C 1.38191 * 120.14828 * 0.02562 * 23 22 21 25 25 C 1.51219 * 130.97099 * 179.97438 * 24 23 22 26 26 C 1.53008 * 110.41140 * 61.24762 * 25 24 23 27 27 C 1.53003 * 110.51549 * 298.85323 * 25 24 23 28 28 H 1.08997 * 109.47235 * 180.70028 * 1 2 3 29 29 H 1.08997 * 109.47213 * 300.69813 * 1 2 3 30 30 H 1.08999 * 109.47187 * 60.69819 * 1 2 3 31 31 H 1.09004 * 109.46686 * 300.00194 * 7 5 4 32 32 H 1.09000 * 109.46788 * 59.99631 * 7 5 4 33 33 H 1.08994 * 109.47260 * 300.00424 * 8 7 5 34 34 H 1.09003 * 109.46907 * 60.00347 * 8 7 5 35 35 H 1.09004 * 109.47585 * 300.00391 * 9 8 7 36 36 H 1.09000 * 109.47087 * 60.00038 * 9 8 7 37 37 H 1.09004 * 109.46555 * 300.00053 * 10 9 8 38 38 H 1.08990 * 109.47160 * 59.99979 * 10 9 8 39 39 H 0.97010 * 119.99796 * 179.97438 * 14 13 11 40 40 H 1.08007 * 119.86055 * 359.97438 * 20 19 4 41 41 H 1.08003 * 119.88867 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.08575 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.92510 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46836 * 175.16139 * 26 25 24 45 45 H 1.08996 * 109.47082 * 295.16470 * 26 25 24 46 46 H 1.09005 * 109.46842 * 55.16200 * 26 25 24 47 47 H 1.09000 * 109.46873 * 304.78221 * 27 25 24 48 48 H 1.09005 * 109.46958 * 64.77891 * 27 25 24 49 49 H 1.08998 * 109.46980 * 184.77996 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 7 2.0383 -0.7296 1.1648 5 6 1.8042 -0.3944 2.4490 6 8 1.1260 0.5772 2.7082 7 6 2.3849 -1.2268 3.5630 8 6 1.9706 -0.6346 4.9115 9 6 2.5596 -1.4801 6.0424 10 6 2.1448 -0.8882 7.3909 11 6 2.7256 -1.7207 8.5048 12 1 3.3297 -2.5856 8.2741 13 6 2.4856 -1.3781 9.8187 14 7 1.7502 -0.3246 10.0996 15 14 3.2048 -2.4103 11.1994 16 1 3.9886 -3.5318 10.6223 17 1 4.0935 -1.5658 12.0375 18 1 2.1047 -2.9535 12.0361 19 6 2.8037 -1.8247 0.7452 20 6 3.4721 -2.7820 1.5110 21 6 4.1787 -3.7938 0.8970 22 6 4.2304 -3.8685 -0.4830 23 6 3.5704 -2.9252 -1.2479 24 6 2.8608 -1.9091 -0.6366 25 6 2.0621 -0.7662 -1.2220 26 6 0.9024 -1.3019 -2.0642 27 6 2.9610 0.1383 -2.0675 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3633 0.5246 0.8836 30 1 -0.3633 0.5029 -0.8962 31 1 2.0125 -2.2483 3.4853 32 1 3.4722 -1.2296 3.4855 33 1 2.3425 0.3869 4.9893 34 1 0.8833 -0.6323 4.9885 35 1 2.1873 -2.5016 5.9643 36 1 3.6469 -1.4829 5.9654 37 1 2.5169 0.1333 7.4692 38 1 1.0576 -0.8858 7.4676 39 1 1.5811 -0.0837 11.0240 40 1 3.4353 -2.7295 2.5892 41 1 4.6936 -4.5306 1.4956 42 1 4.7843 -4.6625 -0.9618 43 1 3.6101 -2.9819 -2.3256 44 1 0.2879 -0.4697 -2.4072 45 1 1.2974 -1.8411 -2.9251 46 1 0.2959 -1.9766 -1.4599 47 1 3.8040 0.4776 -1.4657 48 1 3.3302 -0.4190 -2.9286 49 1 2.3891 1.0004 -2.4107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598276204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:31 Heat of formation + Delta-G solvation = -24.366720 kcal Electronic energy + Delta-G solvation = -26414.499177 eV Core-core repulsion = 22919.667410 eV Total energy + Delta-G solvation = -3494.831767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82167 -39.05153 -37.40328 -34.97081 -34.77972 -32.65995 -31.35261 -30.57107 -29.77655 -28.75924 -27.63331 -26.08798 -24.74502 -23.08455 -22.17225 -22.02738 -20.12798 -19.77137 -19.39606 -17.22816 -16.84675 -16.27696 -16.17230 -15.77761 -15.11059 -14.99838 -14.69103 -14.39113 -14.27756 -14.04998 -13.90085 -13.58786 -13.11739 -13.01164 -12.72334 -12.63570 -12.43392 -12.16955 -12.05808 -12.03748 -11.82524 -11.61970 -11.38683 -11.32710 -11.04465 -11.00455 -10.79189 -10.58956 -10.49172 -10.42703 -10.36898 -9.93002 -9.62630 -9.23921 -9.06094 -8.97930 -8.30725 -7.99697 -5.95286 -3.97693 1.05425 1.13238 2.57891 2.59820 3.33346 3.40546 3.44504 3.55865 3.94864 4.06744 4.44556 4.50167 4.52824 4.68817 4.79153 4.85237 4.99592 5.10108 5.13523 5.15867 5.20094 5.21891 5.26620 5.28043 5.37152 5.40270 5.46657 5.52375 5.59180 5.66094 5.68921 5.70974 5.83101 5.86467 6.01758 6.08040 6.09562 6.22152 6.23882 6.28540 6.34862 6.51506 6.70846 6.80851 6.98275 7.18558 7.32391 7.74227 7.89488 7.95997 8.06043 8.47804 9.10175 9.66027 11.16104 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.002656 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.775594 B =10539.113907 C =11627.429798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.089 0.911 4 N -0.555 5.555 5 C 0.525 3.475 6 O -0.510 6.510 7 C -0.142 4.142 8 C -0.105 4.105 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.154 3.846 20 C -0.162 4.162 21 C -0.084 4.084 22 C -0.148 4.148 23 C -0.071 4.071 24 C -0.128 4.128 25 C -0.027 4.027 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -4.356 -29.896 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.107 0.893 4 N -0.279 5.279 5 C 0.316 3.684 6 O -0.383 6.383 7 C -0.182 4.182 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.058 3.942 20 C -0.183 4.183 21 C -0.103 4.103 22 C -0.167 4.167 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.027 4.027 26 C -0.192 4.192 27 C -0.192 4.192 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.958 -3.580 -29.459 29.741 hybrid contribution 0.421 -0.540 0.862 1.101 sum 2.379 -4.120 -28.597 28.990 Atomic orbital electron populations 1.22249 0.93662 1.02909 1.03420 1.21726 0.95463 0.96143 0.82922 0.89346 1.46312 1.48652 1.26368 1.06521 1.21096 0.79926 0.85429 0.81920 1.90714 1.37472 1.27486 1.82676 1.22186 1.02102 0.99942 0.93945 1.21515 1.01635 1.00110 0.91027 1.21650 0.99181 0.98128 0.95799 1.19095 0.96754 0.96177 0.89686 1.21314 1.31530 1.11846 0.91077 0.92677 1.25045 0.95362 0.95248 0.98946 1.69988 1.38794 1.25928 1.18759 0.86558 0.78917 0.80366 0.82283 1.19755 1.21051 1.21045 1.18435 0.93482 0.88918 0.93373 1.21260 1.00596 0.95256 1.01178 1.20942 0.97405 0.97135 0.94776 1.21010 1.01873 0.99918 0.93930 1.20335 0.95939 0.93094 0.99620 1.19921 1.02431 0.98411 0.92366 1.20131 0.95151 0.92816 0.94614 1.21935 0.96906 1.01265 0.99133 1.21847 0.99111 0.98842 0.99401 0.91876 0.90782 0.90903 0.88426 0.88422 0.91653 0.91661 0.93382 0.93376 0.96577 0.96577 0.93099 0.84046 0.85247 0.85725 0.86055 0.91613 0.92180 0.91914 0.92222 0.91808 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.05 37.16 0.30 -1.37 16 2 C 0.14 1.50 3.30 -67.53 -0.22 1.28 16 3 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 4 N -0.55 -7.09 2.89 -105.79 -0.31 -7.39 16 5 C 0.53 8.00 7.59 -10.99 -0.08 7.92 16 6 O -0.51 -9.34 14.92 5.55 0.08 -9.26 16 7 C -0.14 -2.04 3.53 -27.88 -0.10 -2.14 16 8 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 9 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.15 1.77 6.60 -83.47 -0.55 1.22 16 20 C -0.16 -1.73 8.89 -39.21 -0.35 -2.07 16 21 C -0.08 -0.75 10.02 -39.70 -0.40 -1.14 16 22 C -0.15 -1.18 10.06 -39.57 -0.40 -1.58 16 23 C -0.07 -0.58 10.04 -39.60 -0.40 -0.98 16 24 C -0.13 -1.24 4.87 -104.27 -0.51 -1.75 16 25 C -0.03 -0.22 1.03 -155.02 -0.16 -0.38 16 26 C -0.14 -0.92 7.40 37.16 0.28 -0.64 16 27 C -0.13 -0.93 8.39 37.16 0.31 -0.61 16 28 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 29 H 0.07 0.94 6.84 -51.93 -0.36 0.58 16 30 H 0.07 0.56 6.88 -51.93 -0.36 0.20 16 31 H 0.10 1.25 6.92 -51.93 -0.36 0.89 16 32 H 0.10 1.25 6.92 -51.93 -0.36 0.89 16 33 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.14 1.47 4.23 -52.48 -0.22 1.25 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.06 0.37 6.82 -51.93 -0.35 0.02 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.49 6.76 -51.93 -0.35 0.14 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -33.31 382.26 -9.97 -43.29 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.14 Total: -2.35 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.09 Total: -20.11 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.43 Total: -34.28 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.31 -9.97 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598276204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.920 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds