Wall clock time and date at job start Tue Mar 31 2020 12:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.26360 * 2 1 4 4 N 1.46536 * 110.29713 * 122.06170 * 2 1 3 5 5 C 1.34774 * 124.98397 * 299.00479 * 4 2 1 6 6 O 1.21289 * 119.99549 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00497 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47130 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47092 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47457 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47006 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00470 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99509 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99833 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47103 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47301 * 120.00142 * 15 13 11 18 18 H 1.48507 * 109.47180 * 240.00248 * 15 13 11 19 19 C 1.40040 * 109.92617 * 119.06157 * 4 2 1 20 20 C 1.39625 * 129.30634 * 179.97438 * 19 4 2 21 21 C 1.37845 * 120.28662 * 179.97438 * 20 19 4 22 22 C 1.38297 * 120.22048 * 359.97438 * 21 20 19 23 23 C 1.38221 * 119.82942 * 359.97438 * 22 21 20 24 24 C 1.38191 * 120.14828 * 0.02562 * 23 22 21 25 25 C 1.51219 * 130.97099 * 179.97438 * 24 23 22 26 26 C 1.53008 * 110.41140 * 61.24762 * 25 24 23 27 27 C 1.53003 * 110.51549 * 298.85323 * 25 24 23 28 28 H 1.08997 * 109.47235 * 180.70028 * 1 2 3 29 29 H 1.08997 * 109.47213 * 300.69813 * 1 2 3 30 30 H 1.08999 * 109.47187 * 60.69819 * 1 2 3 31 31 H 1.09004 * 109.46686 * 300.00194 * 7 5 4 32 32 H 1.09000 * 109.46788 * 59.99631 * 7 5 4 33 33 H 1.08994 * 109.47260 * 300.00424 * 8 7 5 34 34 H 1.09003 * 109.46907 * 60.00347 * 8 7 5 35 35 H 1.09004 * 109.47585 * 300.00391 * 9 8 7 36 36 H 1.09000 * 109.47087 * 60.00038 * 9 8 7 37 37 H 1.09004 * 109.46555 * 300.00053 * 10 9 8 38 38 H 1.08990 * 109.47160 * 59.99979 * 10 9 8 39 39 H 0.97010 * 119.99796 * 179.97438 * 14 13 11 40 40 H 1.08007 * 119.86055 * 359.97438 * 20 19 4 41 41 H 1.08003 * 119.88867 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.08575 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.92510 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46836 * 175.16139 * 26 25 24 45 45 H 1.08996 * 109.47082 * 295.16470 * 26 25 24 46 46 H 1.09005 * 109.46842 * 55.16200 * 26 25 24 47 47 H 1.09000 * 109.46873 * 304.78221 * 27 25 24 48 48 H 1.09005 * 109.46958 * 64.77891 * 27 25 24 49 49 H 1.08998 * 109.46980 * 184.77996 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 7 2.0383 -0.7296 1.1648 5 6 1.8042 -0.3944 2.4490 6 8 1.1260 0.5772 2.7082 7 6 2.3849 -1.2268 3.5630 8 6 1.9706 -0.6346 4.9115 9 6 2.5596 -1.4801 6.0424 10 6 2.1448 -0.8882 7.3909 11 6 2.7256 -1.7207 8.5048 12 1 3.3297 -2.5856 8.2741 13 6 2.4856 -1.3781 9.8187 14 7 1.7502 -0.3246 10.0996 15 14 3.2048 -2.4103 11.1994 16 1 3.9886 -3.5318 10.6223 17 1 4.0935 -1.5658 12.0375 18 1 2.1047 -2.9535 12.0361 19 6 2.8037 -1.8247 0.7452 20 6 3.4721 -2.7820 1.5110 21 6 4.1787 -3.7938 0.8970 22 6 4.2304 -3.8685 -0.4830 23 6 3.5704 -2.9252 -1.2479 24 6 2.8608 -1.9091 -0.6366 25 6 2.0621 -0.7662 -1.2220 26 6 0.9024 -1.3019 -2.0642 27 6 2.9610 0.1383 -2.0675 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3633 0.5246 0.8836 30 1 -0.3633 0.5029 -0.8962 31 1 2.0125 -2.2483 3.4853 32 1 3.4722 -1.2296 3.4855 33 1 2.3425 0.3869 4.9893 34 1 0.8833 -0.6323 4.9885 35 1 2.1873 -2.5016 5.9643 36 1 3.6469 -1.4829 5.9654 37 1 2.5169 0.1333 7.4692 38 1 1.0576 -0.8858 7.4676 39 1 1.5811 -0.0837 11.0240 40 1 3.4353 -2.7295 2.5892 41 1 4.6936 -4.5306 1.4956 42 1 4.7843 -4.6625 -0.9618 43 1 3.6101 -2.9819 -2.3256 44 1 0.2879 -0.4697 -2.4072 45 1 1.2974 -1.8411 -2.9251 46 1 0.2959 -1.9766 -1.4599 47 1 3.8040 0.4776 -1.4657 48 1 3.3302 -0.4190 -2.9286 49 1 2.3891 1.0004 -2.4107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598276204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:31 Heat of formation + Delta-G solvation = -41.226754 kcal Electronic energy + Delta-G solvation = -26415.230283 eV Core-core repulsion = 22919.667410 eV Total energy + Delta-G solvation = -3495.562873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66381 -40.12460 -38.14312 -36.68164 -35.69694 -34.64503 -32.16587 -31.78507 -30.89277 -29.61719 -28.41508 -27.48420 -25.93961 -24.16689 -23.48626 -22.87941 -21.82577 -20.76017 -20.18197 -18.44602 -18.22355 -17.74753 -17.26028 -16.63848 -16.51798 -16.07827 -15.86283 -15.60776 -15.30217 -14.93212 -14.79582 -14.51875 -14.38238 -13.96490 -13.79677 -13.69965 -13.62953 -13.36289 -13.27711 -12.97299 -12.86556 -12.74486 -12.49497 -12.46768 -12.29919 -12.26399 -12.08159 -11.99914 -11.77194 -11.47723 -11.45327 -11.33575 -11.25167 -11.19542 -10.89019 -10.57082 -9.73441 -8.82731 -8.20037 -6.32143 0.27319 0.45340 1.39728 1.40721 1.50340 1.54242 1.64680 2.41000 2.86243 3.12899 3.14092 3.38718 3.52282 3.81230 3.85952 3.99381 4.01169 4.09863 4.21694 4.25182 4.33546 4.43311 4.47722 4.50553 4.54595 4.57318 4.67187 4.70838 4.78389 4.80688 4.85562 4.90646 4.99520 5.01145 5.04912 5.09285 5.10524 5.22247 5.27642 5.29163 5.35077 5.41869 5.53335 5.53822 5.57410 5.66367 5.74359 5.85593 6.02941 6.23569 6.36188 6.84468 6.86369 7.37521 8.92539 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.002656 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.775594 B =10539.113907 C =11627.429798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.079 0.921 4 N -0.553 5.553 5 C 0.520 3.480 6 O -0.556 6.556 7 C -0.130 4.130 8 C -0.095 4.095 9 C -0.095 4.095 10 C 0.020 3.980 11 C -0.540 4.540 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.970 3.030 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.117 3.883 20 C -0.175 4.175 21 C -0.092 4.092 22 C -0.140 4.140 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.021 4.021 26 C -0.132 4.132 27 C -0.132 4.132 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.061 0.939 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.082 0.918 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -7.026 -32.348 33.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.097 0.903 4 N -0.276 5.276 5 C 0.312 3.688 6 O -0.433 6.433 7 C -0.169 4.169 8 C -0.133 4.133 9 C -0.132 4.132 10 C -0.017 4.017 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.204 1.204 19 C 0.022 3.978 20 C -0.195 4.195 21 C -0.110 4.110 22 C -0.159 4.159 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.021 4.021 26 C -0.189 4.189 27 C -0.189 4.189 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.072 0.928 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.748 -6.290 -31.963 32.791 hybrid contribution -0.103 0.268 1.542 1.569 sum 3.645 -6.022 -30.420 31.224 Atomic orbital electron populations 1.22195 0.93476 1.02653 1.03161 1.21964 0.95736 0.96078 0.83520 0.90316 1.46243 1.48420 1.26898 1.06043 1.21134 0.79604 0.84968 0.83106 1.90693 1.39723 1.29393 1.83525 1.22054 1.03182 1.00267 0.91365 1.21287 1.00230 0.99020 0.92769 1.21439 1.00035 0.98583 0.93156 1.19040 0.94644 0.94917 0.93120 1.21767 1.31728 1.12355 0.91989 0.91543 1.26097 0.95627 0.96533 1.02151 1.70141 1.40207 1.27882 1.19629 0.85329 0.78214 0.78753 0.78321 1.18042 1.20454 1.20436 1.18723 0.95038 0.89369 0.94629 1.21388 1.01119 0.95815 1.01189 1.21234 0.97125 0.96936 0.95705 1.21413 1.00820 1.00049 0.93582 1.20689 0.95036 0.92268 1.01124 1.20187 1.02316 0.98939 0.91659 1.20154 0.95838 0.92413 0.93706 1.21926 0.96235 1.01626 0.99135 1.21840 0.98434 0.99181 0.99417 0.91952 0.93999 0.88201 0.86530 0.86528 0.93483 0.93477 0.91987 0.91989 0.99640 0.99626 0.92836 0.84438 0.83427 0.82932 0.83316 0.90406 0.90350 0.93102 0.93660 0.89909 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.05 71.98 0.58 -2.67 16 2 C 0.13 2.78 3.30 45.23 0.15 2.93 16 3 H 0.08 1.81 7.70 -2.39 -0.02 1.79 16 4 N -0.55 -14.41 2.89 -607.00 -1.76 -16.17 16 5 C 0.52 16.62 7.59 87.66 0.67 17.28 16 6 O -0.56 -21.90 14.92 -3.06 -0.05 -21.95 16 7 C -0.13 -3.77 3.53 29.85 0.11 -3.67 16 8 C -0.09 -3.61 4.50 30.59 0.14 -3.47 16 9 C -0.09 -3.97 5.15 30.59 0.16 -3.82 16 10 C 0.02 1.11 4.97 29.85 0.15 1.26 16 11 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 12 H 0.07 3.65 7.74 -2.92 -0.02 3.63 16 13 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 14 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 15 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C 0.12 2.59 6.60 38.24 0.25 2.84 16 20 C -0.17 -3.48 8.89 22.51 0.20 -3.28 16 21 C -0.09 -1.38 10.02 22.19 0.22 -1.16 16 22 C -0.14 -1.71 10.06 22.28 0.22 -1.49 16 23 C -0.07 -0.93 10.04 22.25 0.22 -0.71 16 24 C -0.13 -2.22 4.87 -19.64 -0.10 -2.31 16 25 C -0.02 -0.31 1.03 -52.51 -0.05 -0.36 16 26 C -0.13 -1.45 7.40 71.98 0.53 -0.91 16 27 C -0.13 -1.51 8.39 71.98 0.60 -0.90 16 28 H 0.06 1.27 6.70 -2.39 -0.02 1.26 16 29 H 0.04 1.14 6.84 -2.39 -0.02 1.12 16 30 H 0.10 1.44 6.88 -2.39 -0.02 1.42 16 31 H 0.12 2.94 6.92 -2.38 -0.02 2.92 16 32 H 0.12 2.94 6.92 -2.39 -0.02 2.92 16 33 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.26 15.57 8.31 -92.70 -0.77 14.79 16 40 H 0.14 2.71 4.23 -2.91 -0.01 2.70 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.08 0.67 6.82 -2.39 -0.02 0.65 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.05 0.69 6.76 -2.38 -0.02 0.68 16 47 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.68 382.26 6.18 -69.51 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.92 Total: 12.47 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.75 Total: -31.81 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.47 Total: -75.39 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.68 6.18 -69.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598276204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.279 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds