Wall clock time and date at job start Tue Mar 31 2020 12:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46500 * 109.46883 * 240.00392 * 2 1 3 5 5 C 1.34782 * 119.99945 * 85.00265 * 4 2 1 6 6 O 1.21600 * 120.00372 * 359.71774 * 5 4 2 7 7 C 1.47431 * 119.99475 * 179.72387 * 5 4 2 8 8 C 1.39226 * 120.28721 * 354.16002 * 7 5 4 9 9 C 1.38218 * 120.09417 * 179.74492 * 8 7 5 10 10 C 1.38830 * 120.67296 * 0.56417 * 9 8 7 11 11 C 1.37599 * 120.57342 * 359.69350 * 10 9 8 12 12 C 1.40710 * 119.88020 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32653 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99703 * 145.83182 * 13 12 11 15 15 C 1.40268 * 119.99914 * 325.82826 * 13 12 11 16 16 N 1.30625 * 120.00419 * 350.77296 * 15 13 12 17 17 Si 1.86803 * 119.99799 * 170.77278 * 15 13 12 18 18 H 1.48501 * 109.47162 * 59.99955 * 17 15 13 19 19 H 1.48500 * 109.47174 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47085 * 299.99979 * 17 15 13 21 21 C 1.52993 * 109.47321 * 120.00061 * 2 1 3 22 22 H 1.09002 * 109.47047 * 59.99861 * 21 2 1 23 23 C 1.53000 * 109.47321 * 179.97438 * 21 2 1 24 24 C 1.53004 * 109.47305 * 180.02562 * 23 21 2 25 25 C 1.53003 * 109.46782 * 300.00181 * 24 23 21 26 26 C 1.53000 * 109.47348 * 59.99845 * 25 24 23 27 27 H 1.08998 * 109.46852 * 180.02562 * 26 25 24 28 28 C 1.52996 * 109.46916 * 60.00068 * 26 25 24 29 29 C 1.52997 * 109.46867 * 299.99910 * 26 25 24 30 30 H 1.08998 * 109.46852 * 299.99920 * 1 2 3 31 31 H 1.09001 * 109.46941 * 59.99716 * 1 2 3 32 32 H 1.08996 * 109.47140 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99762 * 264.72413 * 4 2 1 34 34 H 1.08000 * 119.95137 * 0.02562 * 8 7 5 35 35 H 1.07991 * 119.66506 * 180.27646 * 9 8 7 36 36 H 1.08007 * 119.71593 * 179.71926 * 10 9 8 37 37 H 1.07997 * 120.06374 * 180.02562 * 11 10 9 38 38 H 0.97005 * 120.00343 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.46852 * 300.00018 * 23 21 2 40 40 H 1.09002 * 109.47174 * 59.99939 * 23 21 2 41 41 H 1.08996 * 109.46954 * 59.99968 * 24 23 21 42 42 H 1.08996 * 109.46824 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.47007 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46807 * 299.99837 * 25 24 23 45 45 H 1.09001 * 109.47427 * 60.00162 * 28 26 25 46 46 H 1.09001 * 109.46977 * 180.02562 * 28 26 25 47 47 H 1.08998 * 109.47416 * 299.99723 * 28 26 25 48 48 H 1.09002 * 109.47474 * 300.00123 * 29 26 25 49 49 H 1.09001 * 109.47001 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8530 1.1606 -2.4130 7 6 2.6442 -0.7116 -3.5595 8 6 3.0966 -2.0256 -3.4754 9 6 3.5569 -2.6738 -4.6061 10 6 3.5857 -2.0240 -5.8326 11 6 3.1502 -0.7237 -5.9462 12 6 2.6713 -0.0432 -4.8115 13 6 2.2226 1.2882 -4.9171 14 1 1.4038 1.6324 -4.3026 15 6 2.8393 2.1665 -5.8203 16 7 3.9381 1.8108 -6.4305 17 14 2.0891 3.8451 -6.1505 18 1 2.0277 4.6178 -4.8838 19 1 2.9253 4.5757 -7.1365 20 1 0.7176 3.6761 -6.6941 21 6 2.0400 -0.7212 1.2492 22 1 1.6767 -1.7489 1.2492 23 6 3.5700 -0.7218 1.2488 24 6 4.0801 -1.4436 2.4978 25 6 3.5705 -0.7225 3.7473 26 6 2.0405 -0.7220 3.7476 27 1 1.6776 -0.2078 4.6376 28 6 1.5301 -2.1642 3.7474 29 6 1.5306 -0.0002 2.4987 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2527 -1.6307 -1.1517 34 1 3.0835 -2.5407 -2.5263 35 1 3.9020 -3.6945 -4.5339 36 1 3.9528 -2.5437 -6.7054 37 1 3.1759 -0.2262 -6.9044 38 1 4.3644 2.4181 -7.0553 39 1 3.9329 -1.2359 0.3588 40 1 3.9338 0.3058 1.2486 41 1 3.7164 -2.4711 2.4975 42 1 5.1700 -1.4444 2.4972 43 1 3.9343 -1.2364 4.6371 44 1 3.9343 0.3050 3.7475 45 1 1.8934 -2.6785 4.6371 46 1 0.4401 -2.1639 3.7471 47 1 1.8930 -2.6780 2.8572 48 1 1.8943 1.0274 2.4989 49 1 0.4406 -0.0001 2.4987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601620434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:08 Heat of formation + Delta-G solvation = -51.380123 kcal Electronic energy + Delta-G solvation = -26970.624153 eV Core-core repulsion = 23474.620997 eV Total energy + Delta-G solvation = -3496.003156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.87133 -38.60202 -36.82054 -34.94357 -33.67537 -31.81205 -31.60058 -29.88773 -29.42256 -28.40149 -26.85990 -25.41922 -23.87148 -22.15161 -22.06723 -21.00428 -20.17668 -19.47039 -18.56466 -17.48966 -16.51191 -15.59772 -15.46268 -15.15017 -14.69431 -14.25864 -14.09002 -13.99231 -13.86459 -13.62749 -13.33097 -13.05804 -12.77128 -12.67514 -12.61486 -12.36616 -12.09011 -11.73803 -11.66806 -11.52107 -11.28555 -11.16468 -11.10092 -11.08933 -10.99296 -10.76575 -10.67073 -10.50346 -10.18421 -10.06573 -10.00632 -9.94695 -9.64124 -9.22946 -8.33722 -8.27414 -7.55580 -7.32487 -6.76656 -4.35311 2.40447 2.84875 3.11001 3.17082 3.27447 3.99300 4.00478 4.22328 4.56855 4.60868 4.65502 4.72221 5.00619 5.16790 5.20389 5.28186 5.34565 5.43650 5.52434 5.55574 5.63064 5.69704 5.71299 5.73388 5.83461 5.85825 5.95661 5.97797 6.00683 6.09504 6.12873 6.15581 6.17800 6.24074 6.28280 6.32228 6.41591 6.48967 6.59805 6.69722 6.98670 7.13852 7.22163 7.32424 7.49520 7.65602 7.92039 8.01892 8.21004 8.46197 8.70086 8.85816 8.93439 9.49128 10.18813 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.003605 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.130231 B = 7765.310529 C = 8695.454696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.081 0.919 4 N -0.742 5.742 5 C 0.566 3.434 6 O -0.539 6.539 7 C -0.261 4.261 8 C -0.057 4.057 9 C -0.247 4.247 10 C -0.096 4.096 11 C -0.149 4.149 12 C 0.147 3.853 13 C -0.417 4.417 14 H 0.104 0.896 15 C 0.070 3.930 16 N -0.795 5.795 17 Si 0.916 3.084 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.092 4.092 22 H 0.074 0.926 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.090 4.090 27 H 0.066 0.934 28 C -0.151 4.151 29 C -0.108 4.108 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.389 0.611 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.282 0.718 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 -5.644 15.494 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.099 0.901 4 N -0.396 5.396 5 C 0.360 3.640 6 O -0.417 6.417 7 C -0.266 4.266 8 C -0.076 4.076 9 C -0.266 4.266 10 C -0.115 4.115 11 C -0.168 4.168 12 C 0.142 3.858 13 C -0.445 4.445 14 H 0.122 0.878 15 C -0.148 4.148 16 N -0.420 5.420 17 Si 0.740 3.260 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.111 4.111 22 H 0.092 0.908 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.109 4.109 27 H 0.084 0.916 28 C -0.208 4.208 29 C -0.146 4.146 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.224 0.776 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.307 -4.667 15.279 16.141 hybrid contribution 0.070 0.179 -0.170 0.257 sum -2.237 -4.487 15.109 15.919 Atomic orbital electron populations 1.22224 0.96272 1.01510 1.02062 1.20750 0.93321 0.97439 0.83986 0.90062 1.46077 1.70309 1.13559 1.09662 1.18393 0.76890 0.86319 0.82444 1.90665 1.50576 1.15948 1.84501 1.19492 1.17844 0.96161 0.93114 1.20637 0.97062 0.93644 0.96233 1.20271 1.13344 0.99224 0.93791 1.20793 0.99298 0.95343 0.96035 1.21357 1.03654 0.92931 0.98891 1.17473 0.86825 0.92616 0.88845 1.20131 1.14521 0.94398 1.15449 0.87778 1.26105 0.94050 1.01305 0.93353 1.69709 1.14173 1.37269 1.20835 0.86228 0.79823 0.80942 0.78975 1.18635 1.20500 1.18799 1.21443 0.95763 0.99959 0.93939 0.90776 1.21562 0.94798 1.01156 0.97645 1.21572 0.99995 0.99535 0.94665 1.21568 0.95186 1.00684 0.97756 1.21080 0.95488 0.96379 0.97933 0.91563 1.21942 1.00702 0.96322 1.01822 1.21629 1.00513 0.99174 0.93292 0.92276 0.91977 0.93036 0.77646 0.89352 0.89206 0.89165 0.86533 0.90721 0.91537 0.91945 0.91860 0.92290 0.92446 0.92100 0.93156 0.92918 0.91890 0.91794 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.13 37.16 0.34 -1.93 16 2 C 0.15 2.24 2.16 -67.93 -0.15 2.09 16 3 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.74 -12.92 4.34 -54.88 -0.24 -13.16 16 5 C 0.57 12.98 7.68 -12.51 -0.10 12.89 16 6 O -0.54 -14.11 13.25 5.28 0.07 -14.04 16 7 C -0.26 -6.38 5.92 -104.36 -0.62 -7.00 16 8 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 9 C -0.25 -5.27 10.03 -39.37 -0.39 -5.67 16 10 C -0.10 -2.18 10.01 -39.60 -0.40 -2.57 16 11 C -0.15 -3.82 8.62 -38.88 -0.34 -4.15 16 12 C 0.15 3.95 5.51 -106.54 -0.59 3.36 16 13 C -0.42 -11.53 7.68 -37.82 -0.29 -11.82 16 14 H 0.10 2.98 5.92 -52.48 -0.31 2.67 16 15 C 0.07 1.82 5.25 -17.30 -0.09 1.72 16 16 N -0.79 -20.82 11.14 55.56 0.62 -20.20 16 17 Si 0.92 19.86 29.57 -169.99 -5.03 14.84 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.09 -1.05 1.55 -90.62 -0.14 -1.19 16 22 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 23 C -0.11 -1.34 5.05 -26.73 -0.13 -1.48 16 24 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 25 C -0.11 -1.01 5.45 -26.73 -0.15 -1.16 16 26 C -0.09 -0.78 3.19 -90.62 -0.29 -1.07 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 C -0.15 -1.23 8.50 37.16 0.32 -0.91 16 29 C -0.11 -1.08 4.38 -26.73 -0.12 -1.19 16 30 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.39 5.97 6.44 -40.82 -0.26 5.71 16 34 H 0.09 1.56 6.44 -52.49 -0.34 1.22 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.12 3.05 6.59 -52.49 -0.35 2.70 16 38 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 39 H 0.07 0.86 7.44 -51.93 -0.39 0.48 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -29.12 371.66 -10.46 -39.58 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.83 Total: 10.37 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.65 Total: -22.99 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.38 Total: -33.36 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.12 -10.46 -39.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.804 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds