Wall clock time and date at job start Tue Mar 31 2020 12:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46500 * 109.46883 * 240.00392 * 2 1 3 5 5 C 1.34782 * 119.99945 * 85.00265 * 4 2 1 6 6 O 1.21600 * 120.00372 * 359.71774 * 5 4 2 7 7 C 1.47431 * 119.99475 * 179.72387 * 5 4 2 8 8 C 1.39226 * 120.28721 * 354.16002 * 7 5 4 9 9 C 1.38218 * 120.09417 * 179.74492 * 8 7 5 10 10 C 1.38830 * 120.67296 * 0.56417 * 9 8 7 11 11 C 1.37599 * 120.57342 * 359.69350 * 10 9 8 12 12 C 1.40710 * 119.88020 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32653 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99703 * 145.83182 * 13 12 11 15 15 C 1.40268 * 119.99914 * 325.82826 * 13 12 11 16 16 N 1.30625 * 120.00419 * 350.77296 * 15 13 12 17 17 Si 1.86803 * 119.99799 * 170.77278 * 15 13 12 18 18 H 1.48501 * 109.47162 * 59.99955 * 17 15 13 19 19 H 1.48500 * 109.47174 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47085 * 299.99979 * 17 15 13 21 21 C 1.52993 * 109.47321 * 120.00061 * 2 1 3 22 22 H 1.09002 * 109.47047 * 59.99861 * 21 2 1 23 23 C 1.53000 * 109.47321 * 179.97438 * 21 2 1 24 24 C 1.53004 * 109.47305 * 180.02562 * 23 21 2 25 25 C 1.53003 * 109.46782 * 300.00181 * 24 23 21 26 26 C 1.53000 * 109.47348 * 59.99845 * 25 24 23 27 27 H 1.08998 * 109.46852 * 180.02562 * 26 25 24 28 28 C 1.52996 * 109.46916 * 60.00068 * 26 25 24 29 29 C 1.52997 * 109.46867 * 299.99910 * 26 25 24 30 30 H 1.08998 * 109.46852 * 299.99920 * 1 2 3 31 31 H 1.09001 * 109.46941 * 59.99716 * 1 2 3 32 32 H 1.08996 * 109.47140 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99762 * 264.72413 * 4 2 1 34 34 H 1.08000 * 119.95137 * 0.02562 * 8 7 5 35 35 H 1.07991 * 119.66506 * 180.27646 * 9 8 7 36 36 H 1.08007 * 119.71593 * 179.71926 * 10 9 8 37 37 H 1.07997 * 120.06374 * 180.02562 * 11 10 9 38 38 H 0.97005 * 120.00343 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.46852 * 300.00018 * 23 21 2 40 40 H 1.09002 * 109.47174 * 59.99939 * 23 21 2 41 41 H 1.08996 * 109.46954 * 59.99968 * 24 23 21 42 42 H 1.08996 * 109.46824 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.47007 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46807 * 299.99837 * 25 24 23 45 45 H 1.09001 * 109.47427 * 60.00162 * 28 26 25 46 46 H 1.09001 * 109.46977 * 180.02562 * 28 26 25 47 47 H 1.08998 * 109.47416 * 299.99723 * 28 26 25 48 48 H 1.09002 * 109.47474 * 300.00123 * 29 26 25 49 49 H 1.09001 * 109.47001 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8530 1.1606 -2.4130 7 6 2.6442 -0.7116 -3.5595 8 6 3.0966 -2.0256 -3.4754 9 6 3.5569 -2.6738 -4.6061 10 6 3.5857 -2.0240 -5.8326 11 6 3.1502 -0.7237 -5.9462 12 6 2.6713 -0.0432 -4.8115 13 6 2.2226 1.2882 -4.9171 14 1 1.4038 1.6324 -4.3026 15 6 2.8393 2.1665 -5.8203 16 7 3.9381 1.8108 -6.4305 17 14 2.0891 3.8451 -6.1505 18 1 2.0277 4.6178 -4.8838 19 1 2.9253 4.5757 -7.1365 20 1 0.7176 3.6761 -6.6941 21 6 2.0400 -0.7212 1.2492 22 1 1.6767 -1.7489 1.2492 23 6 3.5700 -0.7218 1.2488 24 6 4.0801 -1.4436 2.4978 25 6 3.5705 -0.7225 3.7473 26 6 2.0405 -0.7220 3.7476 27 1 1.6776 -0.2078 4.6376 28 6 1.5301 -2.1642 3.7474 29 6 1.5306 -0.0002 2.4987 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2527 -1.6307 -1.1517 34 1 3.0835 -2.5407 -2.5263 35 1 3.9020 -3.6945 -4.5339 36 1 3.9528 -2.5437 -6.7054 37 1 3.1759 -0.2262 -6.9044 38 1 4.3644 2.4181 -7.0553 39 1 3.9329 -1.2359 0.3588 40 1 3.9338 0.3058 1.2486 41 1 3.7164 -2.4711 2.4975 42 1 5.1700 -1.4444 2.4972 43 1 3.9343 -1.2364 4.6371 44 1 3.9343 0.3050 3.7475 45 1 1.8934 -2.6785 4.6371 46 1 0.4401 -2.1639 3.7471 47 1 1.8930 -2.6780 2.8572 48 1 1.8943 1.0274 2.4989 49 1 0.4406 -0.0001 2.4987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:07 Heat of formation + Delta-G solvation = -65.702593 kcal Electronic energy + Delta-G solvation = -26971.245222 eV Core-core repulsion = 23474.620997 eV Total energy + Delta-G solvation = -3496.624225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11415 -40.03469 -38.54207 -36.36940 -35.53410 -33.07122 -32.61797 -31.72264 -31.03620 -29.57610 -27.60743 -27.26247 -25.13117 -23.71042 -22.91312 -22.74548 -21.46943 -21.09753 -19.44603 -19.34191 -18.07965 -17.17791 -16.90053 -16.47851 -15.93659 -15.79494 -15.46558 -15.32598 -14.98010 -14.90682 -14.59684 -14.48612 -14.38642 -13.99054 -13.76832 -13.57716 -13.43352 -13.22617 -12.85735 -12.81551 -12.62298 -12.53232 -12.47689 -12.32733 -12.26658 -12.06635 -11.89873 -11.85065 -11.70726 -11.47619 -11.13876 -11.07090 -10.86983 -10.80270 -10.18994 -9.85678 -9.37490 -9.21663 -8.66918 -6.35232 0.54620 1.02585 1.31880 1.43441 1.50372 2.20417 2.40082 2.52357 2.80395 3.62435 3.73691 3.80860 3.84078 4.17103 4.24040 4.32855 4.36638 4.40771 4.46292 4.51536 4.53636 4.59963 4.60795 4.67934 4.70527 4.83723 4.88208 4.88753 5.01139 5.09010 5.10282 5.14545 5.17386 5.19997 5.24536 5.25673 5.34019 5.35561 5.38480 5.43485 5.52926 5.54163 5.63232 5.70458 5.80996 5.84979 6.07638 6.11940 6.35730 6.66629 6.83161 6.94577 7.04775 7.74179 8.30592 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.003605 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.130231 B = 7765.310529 C = 8695.454696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.049 0.951 4 N -0.720 5.720 5 C 0.561 3.439 6 O -0.581 6.581 7 C -0.280 4.280 8 C -0.054 4.054 9 C -0.237 4.237 10 C -0.092 4.092 11 C -0.179 4.179 12 C 0.116 3.884 13 C -0.459 4.459 14 H 0.080 0.920 15 C 0.032 3.968 16 N -0.825 5.825 17 Si 0.977 3.023 18 H -0.274 1.274 19 H -0.259 1.259 20 H -0.257 1.257 21 C -0.078 4.078 22 H 0.092 0.908 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.087 4.087 27 H 0.076 0.924 28 C -0.150 4.150 29 C -0.107 4.107 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.289 0.711 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -8.238 17.647 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.068 0.932 4 N -0.374 5.374 5 C 0.354 3.646 6 O -0.462 6.462 7 C -0.285 4.285 8 C -0.072 4.072 9 C -0.256 4.256 10 C -0.111 4.111 11 C -0.198 4.198 12 C 0.112 3.888 13 C -0.488 4.488 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.451 5.451 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.183 1.183 20 H -0.181 1.181 21 C -0.097 4.097 22 H 0.110 0.890 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.105 4.105 27 H 0.095 0.905 28 C -0.207 4.207 29 C -0.145 4.145 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.240 0.760 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.287 -7.313 17.457 19.065 hybrid contribution 0.102 0.794 -0.718 1.075 sum -2.185 -6.519 16.739 18.096 Atomic orbital electron populations 1.22163 0.95185 1.02502 1.01557 1.20939 0.94143 0.96191 0.84417 0.93239 1.45842 1.68729 1.13961 1.08839 1.18410 0.76674 0.85900 0.83645 1.90644 1.52409 1.17840 1.85333 1.19896 1.17860 0.97692 0.93029 1.21055 0.95386 0.92349 0.98425 1.20795 1.11136 1.00846 0.92775 1.21176 0.97682 0.94211 0.98032 1.21301 1.06097 0.94474 0.97965 1.17852 0.87611 0.92960 0.90393 1.20091 1.15643 0.95796 1.17235 0.90176 1.26769 0.94231 1.04360 0.92890 1.69737 1.14983 1.38650 1.21746 0.85339 0.79584 0.76731 0.78515 1.19956 1.18267 1.18130 1.21358 0.95405 1.00442 0.92512 0.88988 1.21552 0.95079 1.00152 0.98466 1.21536 1.00082 0.99871 0.93751 1.21575 0.95435 1.00335 0.97833 1.21064 0.95201 0.96903 0.97327 0.90548 1.21933 1.01032 0.95564 1.02153 1.21635 1.01044 0.98648 0.93190 0.89744 0.95566 0.91180 0.76027 0.85070 0.84963 0.86291 0.88308 0.90078 0.92808 0.93973 0.90643 0.92205 0.90984 0.92882 0.92198 0.92454 0.92187 0.92861 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.13 71.98 0.66 -3.59 16 2 C 0.15 4.37 2.16 44.99 0.10 4.47 16 3 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 4 N -0.72 -24.84 4.34 -445.80 -1.93 -26.77 16 5 C 0.56 26.55 7.68 86.66 0.67 27.21 16 6 O -0.58 -32.38 13.25 -4.03 -0.05 -32.43 16 7 C -0.28 -13.87 5.92 -19.70 -0.12 -13.99 16 8 C -0.05 -2.16 9.52 22.50 0.21 -1.95 16 9 C -0.24 -9.31 10.03 22.41 0.22 -9.08 16 10 C -0.09 -4.07 10.01 22.26 0.22 -3.84 16 11 C -0.18 -9.41 8.62 22.72 0.20 -9.22 16 12 C 0.12 6.50 5.51 -21.11 -0.12 6.38 16 13 C -0.46 -27.07 7.68 23.41 0.18 -26.89 16 14 H 0.08 4.97 5.92 -2.91 -0.02 4.96 16 15 C 0.03 1.75 5.25 85.37 0.45 2.20 16 16 N -0.82 -45.17 11.14 21.88 0.24 -44.92 16 17 Si 0.98 42.78 29.57 68.60 2.03 44.81 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 C -0.08 -1.64 1.55 -10.80 -0.02 -1.66 16 22 H 0.09 1.67 6.43 -2.39 -0.02 1.65 16 23 C -0.11 -2.58 5.05 30.60 0.15 -2.42 16 24 C -0.12 -1.97 5.65 30.60 0.17 -1.79 16 25 C -0.11 -1.74 5.45 30.60 0.17 -1.57 16 26 C -0.09 -1.24 3.19 -10.80 -0.03 -1.28 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 C -0.15 -1.87 8.50 71.98 0.61 -1.26 16 29 C -0.11 -1.91 4.38 30.59 0.13 -1.78 16 30 H 0.08 1.86 6.43 -2.39 -0.02 1.84 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.40 11.49 6.44 -92.71 -0.60 10.90 16 34 H 0.13 4.08 6.44 -2.91 -0.02 4.06 16 35 H 0.13 4.14 8.06 -2.92 -0.02 4.12 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.10 5.43 6.59 -2.91 -0.02 5.41 16 38 H 0.29 14.31 8.29 -92.70 -0.77 13.54 16 39 H 0.05 1.33 7.44 -2.39 -0.02 1.31 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.13 6.43 -2.39 -0.02 1.12 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.79 4.81 -2.39 -0.01 0.77 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.23 6.43 -2.39 -0.02 1.22 16 Total: -1.00 -68.50 371.66 4.50 -64.01 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.35 Total: 35.37 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 3.86 Total: -40.06 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.69 Total: -71.69 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.50 4.50 -64.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.695 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds