Wall clock time and date at job start Tue Mar 31 2020 12:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47240 * 2 1 4 4 N 1.46498 * 109.47218 * 239.99649 * 2 1 3 5 5 C 1.34778 * 119.99936 * 84.99981 * 4 2 1 6 6 O 1.21610 * 120.00122 * 0.02562 * 5 4 2 7 7 C 1.47432 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.39223 * 120.28236 * 354.15803 * 7 5 4 9 9 C 1.38215 * 120.09429 * 179.97438 * 8 7 5 10 10 C 1.38832 * 120.67445 * 0.02573 * 9 8 7 11 11 C 1.37595 * 120.56974 * 359.97362 * 10 9 8 12 12 C 1.40711 * 119.88375 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32654 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99713 * 145.83648 * 13 12 11 15 15 C 1.40264 * 120.00208 * 325.83562 * 13 12 11 16 16 N 1.30629 * 120.00491 * 350.75906 * 15 13 12 17 17 Si 1.86805 * 119.99981 * 170.75507 * 15 13 12 18 18 H 1.48498 * 109.46964 * 90.00264 * 17 15 13 19 19 H 1.48500 * 109.47257 * 209.99727 * 17 15 13 20 20 H 1.48490 * 109.47127 * 330.00125 * 17 15 13 21 21 C 1.52999 * 109.47179 * 119.99907 * 2 1 3 22 22 H 1.09000 * 109.47458 * 180.02562 * 21 2 1 23 23 C 1.53006 * 109.47008 * 59.99557 * 21 2 1 24 24 C 1.52999 * 109.47008 * 179.97438 * 23 21 2 25 25 C 1.52995 * 109.47351 * 60.00382 * 24 23 21 26 26 C 1.53007 * 109.47265 * 299.99909 * 25 24 23 27 27 H 1.08996 * 109.46932 * 300.00345 * 26 25 24 28 28 C 1.53002 * 109.47394 * 179.97438 * 26 25 24 29 29 C 1.53002 * 109.47073 * 299.99951 * 21 2 1 30 30 H 1.09002 * 109.47155 * 59.99661 * 1 2 3 31 31 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46962 * 300.00180 * 1 2 3 33 33 H 0.97000 * 120.00440 * 265.00751 * 4 2 1 34 34 H 1.08002 * 119.95553 * 359.96145 * 8 7 5 35 35 H 1.07999 * 119.66779 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.71588 * 179.69783 * 10 9 8 37 37 H 1.08004 * 120.05754 * 179.97438 * 11 10 9 38 38 H 0.96994 * 120.00396 * 180.02562 * 16 15 13 39 39 H 1.08987 * 109.47532 * 300.00327 * 23 21 2 40 40 H 1.09004 * 109.46810 * 60.00935 * 23 21 2 41 41 H 1.09000 * 109.47121 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47458 * 300.00450 * 24 23 21 43 43 H 1.09000 * 109.46783 * 59.99656 * 25 24 23 44 44 H 1.09001 * 109.47592 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46733 * 59.99944 * 28 26 25 46 46 H 1.08999 * 109.46757 * 180.02562 * 28 26 25 47 47 H 1.09000 * 109.46932 * 299.99917 * 28 26 25 48 48 H 1.08995 * 109.47203 * 299.99820 * 29 21 2 49 49 H 1.09003 * 109.47248 * 60.00152 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1617 -2.4117 7 6 2.6380 -0.7135 -3.5610 8 6 3.0847 -2.0295 -3.4787 9 6 3.5437 -2.6777 -4.6099 10 6 3.5662 -2.0296 -5.8374 11 6 3.1312 -0.7292 -5.9503 12 6 2.6591 -0.0467 -4.8139 13 6 2.2109 1.2849 -4.9189 14 1 1.3958 1.6306 -4.3004 15 6 2.8231 2.1614 -5.8268 16 7 3.9184 1.8041 -6.4425 17 14 2.0722 3.8400 -6.1555 18 1 2.6357 4.8296 -5.2024 19 1 2.3846 4.2585 -7.5456 20 1 0.5996 3.7665 -5.9797 21 6 2.0400 -0.7212 1.2492 22 1 3.1300 -0.7208 1.2495 23 6 1.5299 -2.1637 1.2493 24 6 2.0404 -2.8851 2.4982 25 6 1.5310 -2.1641 3.7478 26 6 2.0410 -0.7216 3.7478 27 1 3.1310 -0.7216 3.7473 28 6 1.5311 -0.0003 4.9971 29 6 1.5300 0.0001 2.4985 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2489 -1.6318 -1.1526 34 1 3.0729 -2.5447 -2.5295 35 1 3.8882 -3.6987 -4.5382 36 1 3.9326 -2.5492 -6.7105 37 1 3.1527 -0.2328 -6.9093 38 1 4.3419 2.4104 -7.0700 39 1 0.4400 -2.1637 1.2493 40 1 1.8933 -2.6776 0.3593 41 1 1.6774 -3.9129 2.4980 42 1 3.1304 -2.8852 2.4978 43 1 0.4410 -2.1641 3.7482 44 1 1.8951 -2.6778 4.6376 45 1 1.8945 -0.5142 5.8870 46 1 1.8941 1.0275 4.9968 47 1 0.4411 -0.0003 4.9971 48 1 1.8933 1.0277 2.4985 49 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601620436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:22 Heat of formation + Delta-G solvation = -53.161262 kcal Electronic energy + Delta-G solvation = -26753.630212 eV Core-core repulsion = 23257.549820 eV Total energy + Delta-G solvation = -3496.080392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.81840 -38.52622 -36.80305 -35.02544 -33.68762 -32.30733 -31.58423 -29.89280 -29.41970 -28.25254 -26.55079 -25.44364 -24.08650 -22.17472 -22.06241 -20.93816 -20.16217 -19.31934 -19.07778 -17.45516 -16.39641 -15.52575 -15.25340 -15.06493 -14.83532 -14.53812 -14.28293 -14.04771 -13.90150 -13.64088 -13.43886 -13.06086 -12.71280 -12.67911 -12.46869 -12.25945 -12.14079 -11.90750 -11.62044 -11.59956 -11.55543 -11.14585 -11.08088 -10.98107 -10.91621 -10.71356 -10.66015 -10.49534 -10.39217 -10.16658 -10.05136 -9.91985 -9.63912 -9.23554 -8.34405 -8.28814 -7.55768 -7.32528 -6.76836 -4.35309 2.40106 2.83767 3.11632 3.19128 3.25766 3.98959 4.00341 4.21546 4.53323 4.55250 4.64432 4.71895 4.96435 5.04799 5.15871 5.28385 5.34426 5.41661 5.49219 5.54203 5.55261 5.64105 5.67630 5.70362 5.77841 5.81513 5.89350 5.97540 6.02273 6.06449 6.09143 6.11474 6.15227 6.20845 6.22551 6.30640 6.36904 6.42498 6.63454 6.68894 6.98529 7.13704 7.22069 7.32292 7.49375 7.65480 7.91880 8.01814 8.20888 8.45913 8.70097 8.85737 8.93388 9.48515 10.18679 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.003445 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.045434 B = 8126.062802 C = 9413.611340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.744 5.744 5 C 0.565 3.435 6 O -0.539 6.539 7 C -0.261 4.261 8 C -0.057 4.057 9 C -0.247 4.247 10 C -0.096 4.096 11 C -0.149 4.149 12 C 0.146 3.854 13 C -0.416 4.416 14 H 0.105 0.895 15 C 0.069 3.931 16 N -0.794 5.794 17 Si 0.917 3.083 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.260 1.260 21 C -0.093 4.093 22 H 0.073 0.927 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.092 4.092 27 H 0.068 0.932 28 C -0.147 4.147 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.390 0.610 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -6.036 15.891 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.100 0.900 4 N -0.398 5.398 5 C 0.359 3.641 6 O -0.417 6.417 7 C -0.266 4.266 8 C -0.076 4.076 9 C -0.266 4.266 10 C -0.115 4.115 11 C -0.168 4.168 12 C 0.142 3.858 13 C -0.444 4.444 14 H 0.123 0.877 15 C -0.149 4.149 16 N -0.420 5.420 17 Si 0.742 3.258 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.183 1.183 21 C -0.112 4.112 22 H 0.092 0.908 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.150 4.150 26 C -0.111 4.111 27 H 0.087 0.913 28 C -0.204 4.204 29 C -0.146 4.146 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.713 -5.063 15.675 16.886 hybrid contribution 0.106 0.167 -0.175 0.264 sum -3.607 -4.895 15.500 16.650 Atomic orbital electron populations 1.22272 0.96277 1.01666 1.01995 1.20704 0.93574 0.97202 0.83951 0.90012 1.46153 1.70411 1.13600 1.09684 1.18417 0.76833 0.86375 0.82507 1.90664 1.50610 1.15858 1.84576 1.19489 1.17966 0.96064 0.93060 1.20633 0.97104 0.93639 0.96225 1.20274 1.13308 0.99264 0.93758 1.20796 0.99305 0.95362 0.96028 1.21357 1.03657 0.92892 0.98880 1.17483 0.86815 0.92676 0.88859 1.20154 1.14707 0.94403 1.15134 0.87746 1.26112 0.94063 1.01325 0.93364 1.69715 1.14378 1.37165 1.20713 0.86160 0.80819 0.81139 0.77732 1.19342 1.20356 1.18337 1.21408 1.00636 0.95028 0.94102 0.90840 1.21650 1.01203 0.95078 0.97532 1.21532 1.00776 0.98693 0.94675 1.21587 1.00673 0.95170 0.97589 1.21146 1.00340 0.94882 0.94699 0.91342 1.21829 1.01127 1.00247 0.97240 1.21670 1.01103 0.98841 0.92939 0.92064 0.92671 0.92313 0.77504 0.89405 0.89183 0.89139 0.86512 0.90774 0.91362 0.92034 0.92169 0.92086 0.92079 0.92411 0.92954 0.92716 0.92776 0.91815 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.78 37.16 0.33 -1.97 16 2 C 0.15 2.27 2.40 -67.93 -0.16 2.10 16 3 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.74 -13.13 4.95 -54.88 -0.27 -13.40 16 5 C 0.56 13.08 7.68 -12.52 -0.10 12.99 16 6 O -0.54 -14.17 13.25 5.27 0.07 -14.10 16 7 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 8 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 9 C -0.25 -5.29 10.03 -39.37 -0.39 -5.68 16 10 C -0.10 -2.19 10.01 -39.60 -0.40 -2.58 16 11 C -0.15 -3.81 8.62 -38.88 -0.34 -4.15 16 12 C 0.15 3.94 5.51 -106.54 -0.59 3.36 16 13 C -0.42 -11.53 7.68 -37.82 -0.29 -11.82 16 14 H 0.10 3.00 5.92 -52.48 -0.31 2.69 16 15 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 16 N -0.79 -20.83 11.14 55.56 0.62 -20.21 16 17 Si 0.92 19.91 29.57 -169.99 -5.03 14.88 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.09 -1.07 2.18 -90.62 -0.20 -1.26 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.12 -1.20 4.68 -26.73 -0.13 -1.33 16 24 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 25 C -0.11 -0.93 5.20 -26.73 -0.14 -1.06 16 26 C -0.09 -0.80 2.72 -90.58 -0.25 -1.04 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 29 C -0.11 -1.07 4.13 -26.70 -0.11 -1.18 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.39 6.08 4.93 -40.82 -0.20 5.87 16 34 H 0.09 1.57 6.44 -52.49 -0.34 1.23 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.12 3.06 6.59 -52.48 -0.35 2.71 16 38 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 39 H 0.07 0.70 6.43 -51.94 -0.33 0.37 16 40 H 0.06 0.66 6.51 -51.93 -0.34 0.32 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -29.23 373.32 -10.53 -39.76 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.89 Total: 9.98 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.65 Total: -22.54 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.35 Total: -33.62 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.07 Total: -14.10 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.23 -10.53 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.398 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds