Wall clock time and date at job start Tue Mar 31 2020 12:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47240 * 2 1 4 4 N 1.46498 * 109.47218 * 239.99649 * 2 1 3 5 5 C 1.34778 * 119.99936 * 84.99981 * 4 2 1 6 6 O 1.21610 * 120.00122 * 0.02562 * 5 4 2 7 7 C 1.47432 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.39223 * 120.28236 * 354.15803 * 7 5 4 9 9 C 1.38215 * 120.09429 * 179.97438 * 8 7 5 10 10 C 1.38832 * 120.67445 * 0.02573 * 9 8 7 11 11 C 1.37595 * 120.56974 * 359.97362 * 10 9 8 12 12 C 1.40711 * 119.88375 * 0.02562 * 11 10 9 13 13 C 1.40888 * 120.32654 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99713 * 145.83648 * 13 12 11 15 15 C 1.40264 * 120.00208 * 325.83562 * 13 12 11 16 16 N 1.30629 * 120.00491 * 350.75906 * 15 13 12 17 17 Si 1.86805 * 119.99981 * 170.75507 * 15 13 12 18 18 H 1.48498 * 109.46964 * 90.00264 * 17 15 13 19 19 H 1.48500 * 109.47257 * 209.99727 * 17 15 13 20 20 H 1.48490 * 109.47127 * 330.00125 * 17 15 13 21 21 C 1.52999 * 109.47179 * 119.99907 * 2 1 3 22 22 H 1.09000 * 109.47458 * 180.02562 * 21 2 1 23 23 C 1.53006 * 109.47008 * 59.99557 * 21 2 1 24 24 C 1.52999 * 109.47008 * 179.97438 * 23 21 2 25 25 C 1.52995 * 109.47351 * 60.00382 * 24 23 21 26 26 C 1.53007 * 109.47265 * 299.99909 * 25 24 23 27 27 H 1.08996 * 109.46932 * 300.00345 * 26 25 24 28 28 C 1.53002 * 109.47394 * 179.97438 * 26 25 24 29 29 C 1.53002 * 109.47073 * 299.99951 * 21 2 1 30 30 H 1.09002 * 109.47155 * 59.99661 * 1 2 3 31 31 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46962 * 300.00180 * 1 2 3 33 33 H 0.97000 * 120.00440 * 265.00751 * 4 2 1 34 34 H 1.08002 * 119.95553 * 359.96145 * 8 7 5 35 35 H 1.07999 * 119.66779 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.71588 * 179.69783 * 10 9 8 37 37 H 1.08004 * 120.05754 * 179.97438 * 11 10 9 38 38 H 0.96994 * 120.00396 * 180.02562 * 16 15 13 39 39 H 1.08987 * 109.47532 * 300.00327 * 23 21 2 40 40 H 1.09004 * 109.46810 * 60.00935 * 23 21 2 41 41 H 1.09000 * 109.47121 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47458 * 300.00450 * 24 23 21 43 43 H 1.09000 * 109.46783 * 59.99656 * 25 24 23 44 44 H 1.09001 * 109.47592 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46733 * 59.99944 * 28 26 25 46 46 H 1.08999 * 109.46757 * 180.02562 * 28 26 25 47 47 H 1.09000 * 109.46932 * 299.99917 * 28 26 25 48 48 H 1.08995 * 109.47203 * 299.99820 * 29 21 2 49 49 H 1.09003 * 109.47248 * 60.00152 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1617 -2.4117 7 6 2.6380 -0.7135 -3.5610 8 6 3.0847 -2.0295 -3.4787 9 6 3.5437 -2.6777 -4.6099 10 6 3.5662 -2.0296 -5.8374 11 6 3.1312 -0.7292 -5.9503 12 6 2.6591 -0.0467 -4.8139 13 6 2.2109 1.2849 -4.9189 14 1 1.3958 1.6306 -4.3004 15 6 2.8231 2.1614 -5.8268 16 7 3.9184 1.8041 -6.4425 17 14 2.0722 3.8400 -6.1555 18 1 2.6357 4.8296 -5.2024 19 1 2.3846 4.2585 -7.5456 20 1 0.5996 3.7665 -5.9797 21 6 2.0400 -0.7212 1.2492 22 1 3.1300 -0.7208 1.2495 23 6 1.5299 -2.1637 1.2493 24 6 2.0404 -2.8851 2.4982 25 6 1.5310 -2.1641 3.7478 26 6 2.0410 -0.7216 3.7478 27 1 3.1310 -0.7216 3.7473 28 6 1.5311 -0.0003 4.9971 29 6 1.5300 0.0001 2.4985 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2489 -1.6318 -1.1526 34 1 3.0729 -2.5447 -2.5295 35 1 3.8882 -3.6987 -4.5382 36 1 3.9326 -2.5492 -6.7105 37 1 3.1527 -0.2328 -6.9093 38 1 4.3419 2.4104 -7.0700 39 1 0.4400 -2.1637 1.2493 40 1 1.8933 -2.6776 0.3593 41 1 1.6774 -3.9129 2.4980 42 1 3.1304 -2.8852 2.4978 43 1 0.4410 -2.1641 3.7482 44 1 1.8951 -2.6778 4.6376 45 1 1.8945 -0.5142 5.8870 46 1 1.8941 1.0275 4.9968 47 1 0.4411 -0.0003 4.9971 48 1 1.8933 1.0277 2.4985 49 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:21 Heat of formation + Delta-G solvation = -67.540579 kcal Electronic energy + Delta-G solvation = -26754.253746 eV Core-core repulsion = 23257.549820 eV Total energy + Delta-G solvation = -3496.703926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11041 -39.92670 -38.51253 -36.38457 -35.54548 -33.32297 -32.78574 -31.72821 -31.05271 -29.43353 -27.38677 -27.18297 -25.35084 -23.75644 -22.91138 -22.69247 -21.18042 -20.88475 -20.15023 -19.29787 -18.05999 -17.16158 -16.79551 -16.14590 -16.03175 -15.79410 -15.63058 -15.33217 -15.22099 -14.99996 -14.77292 -14.49240 -14.22303 -13.94805 -13.76016 -13.45729 -13.35737 -13.13851 -12.87113 -12.82478 -12.72804 -12.60240 -12.48646 -12.37437 -12.27387 -12.02904 -11.89131 -11.78761 -11.55519 -11.48257 -11.22578 -11.14519 -10.96756 -10.77897 -10.20918 -9.88402 -9.38317 -9.22177 -8.67220 -6.35431 0.53743 1.01510 1.32125 1.45459 1.49005 2.20412 2.38760 2.51172 2.79760 3.65420 3.73137 3.77188 3.85912 4.10027 4.22151 4.30728 4.35807 4.37232 4.42914 4.52281 4.58045 4.61072 4.64327 4.65736 4.76117 4.82748 4.86684 4.88320 4.96961 5.04450 5.09076 5.13024 5.14777 5.22302 5.23978 5.25773 5.34859 5.37072 5.40145 5.45400 5.49943 5.50966 5.62714 5.69149 5.79446 5.84178 6.07031 6.11484 6.35194 6.66210 6.82416 6.93855 7.03731 7.72351 8.30502 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.003445 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.045434 B = 8126.062802 C = 9413.611340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.052 0.948 4 N -0.723 5.723 5 C 0.559 3.441 6 O -0.580 6.580 7 C -0.280 4.280 8 C -0.054 4.054 9 C -0.236 4.236 10 C -0.093 4.093 11 C -0.178 4.178 12 C 0.114 3.886 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.031 3.969 16 N -0.824 5.824 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.256 1.256 20 H -0.264 1.264 21 C -0.081 4.081 22 H 0.066 0.934 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.089 4.089 27 H 0.064 0.936 28 C -0.146 4.146 29 C -0.106 4.106 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.289 0.711 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -8.479 17.882 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.070 0.930 4 N -0.377 5.377 5 C 0.352 3.648 6 O -0.461 6.461 7 C -0.285 4.285 8 C -0.073 4.073 9 C -0.255 4.255 10 C -0.111 4.111 11 C -0.197 4.197 12 C 0.110 3.890 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.451 5.451 17 Si 0.800 3.200 18 H -0.197 1.197 19 H -0.180 1.180 20 H -0.188 1.188 21 C -0.100 4.100 22 H 0.085 0.915 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.082 0.918 28 C -0.203 4.203 29 C -0.144 4.144 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.240 0.760 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.682 -7.558 17.693 19.589 hybrid contribution 0.131 0.732 -0.674 1.003 sum -3.551 -6.826 17.019 18.678 Atomic orbital electron populations 1.22200 0.95194 1.02585 1.01447 1.20893 0.94400 0.96052 0.84347 0.92996 1.45942 1.68860 1.14001 1.08907 1.18455 0.76655 0.85990 0.83715 1.90642 1.52398 1.17694 1.85393 1.19885 1.18011 0.97600 0.92972 1.21043 0.95487 0.92360 0.98401 1.20798 1.11090 1.00889 0.92740 1.21182 0.97679 0.94234 0.98025 1.21300 1.06058 0.94423 0.97941 1.17870 0.87630 0.93046 0.90411 1.20103 1.15818 0.95777 1.16891 0.90171 1.26781 0.94248 1.04397 0.92898 1.69739 1.15183 1.38567 1.21606 0.85268 0.79533 0.76783 0.78443 1.19663 1.17982 1.18783 1.21311 1.00141 0.95899 0.92687 0.91520 1.21653 1.01445 0.93840 0.98401 1.21510 1.00690 0.99152 0.93995 1.21581 1.00906 0.94550 0.97747 1.21118 1.00084 0.95341 0.94256 0.91779 1.21811 1.01359 1.00075 0.97036 1.21663 1.01407 0.98453 0.92840 0.95612 0.90924 0.89875 0.75952 0.85219 0.84931 0.86225 0.88251 0.90068 0.90926 0.92314 0.90993 0.92237 0.91678 0.91278 0.92005 0.93019 0.92396 0.92616 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.78 71.98 0.63 -3.67 16 2 C 0.15 4.42 2.40 44.99 0.11 4.53 16 3 H 0.05 1.89 7.58 -2.39 -0.02 1.87 16 4 N -0.72 -25.30 4.95 -445.81 -2.21 -27.50 16 5 C 0.56 26.65 7.68 86.66 0.67 27.32 16 6 O -0.58 -32.34 13.25 -4.06 -0.05 -32.39 16 7 C -0.28 -13.93 5.92 -19.70 -0.12 -14.05 16 8 C -0.05 -2.21 9.52 22.50 0.21 -1.99 16 9 C -0.24 -9.32 10.03 22.41 0.22 -9.10 16 10 C -0.09 -4.08 10.01 22.26 0.22 -3.85 16 11 C -0.18 -9.35 8.62 22.72 0.20 -9.15 16 12 C 0.11 6.43 5.51 -21.11 -0.12 6.32 16 13 C -0.46 -26.95 7.68 23.41 0.18 -26.77 16 14 H 0.08 4.98 5.92 -2.91 -0.02 4.96 16 15 C 0.03 1.70 5.25 85.36 0.45 2.15 16 16 N -0.82 -45.08 11.14 21.88 0.24 -44.84 16 17 Si 0.98 42.76 29.57 68.60 2.03 44.78 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C -0.08 -1.75 2.18 -10.79 -0.02 -1.78 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 C -0.12 -2.06 4.68 30.60 0.14 -1.91 16 24 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 25 C -0.11 -1.45 5.20 30.59 0.16 -1.30 16 26 C -0.09 -1.34 2.72 -10.77 -0.03 -1.37 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 C -0.15 -1.89 9.19 71.98 0.66 -1.23 16 29 C -0.11 -1.93 4.13 30.61 0.13 -1.80 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.73 6.43 -2.39 -0.02 1.72 16 32 H 0.08 1.87 6.43 -2.39 -0.02 1.85 16 33 H 0.40 11.76 4.93 -92.71 -0.46 11.30 16 34 H 0.13 4.09 6.44 -2.91 -0.02 4.07 16 35 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 5.46 6.59 -2.91 -0.02 5.44 16 38 H 0.29 14.24 8.29 -92.71 -0.77 13.47 16 39 H 0.07 1.25 6.43 -2.39 -0.02 1.23 16 40 H 0.06 1.08 6.51 -2.39 -0.02 1.06 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.27 6.43 -2.39 -0.02 1.26 16 Total: -1.00 -68.14 373.32 4.37 -63.76 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.48 Total: 35.35 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.88 Total: -39.16 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.96 Total: -72.34 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.14 4.37 -63.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.776 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds