Wall clock time and date at job start Tue Mar 31 2020 12:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47525 * 2 1 4 4 N 1.46505 * 109.47243 * 239.99720 * 2 1 3 5 5 C 1.34780 * 119.99838 * 84.99682 * 4 2 1 6 6 O 1.21609 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.47432 * 119.99778 * 180.02562 * 5 4 2 8 8 C 1.39223 * 120.28236 * 354.15970 * 7 5 4 9 9 C 1.38222 * 120.09131 * 179.97438 * 8 7 5 10 10 C 1.38825 * 120.67277 * 0.02562 * 9 8 7 11 11 C 1.37595 * 120.57441 * 359.97438 * 10 9 8 12 12 C 1.40704 * 119.88098 * 0.02562 * 11 10 9 13 13 C 1.40885 * 120.32756 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00073 * 145.83389 * 13 12 11 15 15 C 1.40279 * 120.00187 * 325.83237 * 13 12 11 16 16 N 1.30631 * 119.99591 * 350.75847 * 15 13 12 17 17 Si 1.86801 * 120.00021 * 170.75445 * 15 13 12 18 18 H 1.48494 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46929 * 120.00271 * 17 15 13 20 20 H 1.48499 * 109.47137 * 240.00061 * 17 15 13 21 21 C 1.53004 * 109.47353 * 119.99964 * 2 1 3 22 22 H 1.08995 * 109.47114 * 59.99718 * 21 2 1 23 23 C 1.52996 * 109.47353 * 179.97438 * 21 2 1 24 24 C 1.53004 * 109.47353 * 179.97438 * 23 21 2 25 25 C 1.53002 * 109.46744 * 299.99856 * 24 23 21 26 26 C 1.52996 * 109.47078 * 59.99976 * 25 24 23 27 27 H 1.09002 * 109.47525 * 59.99616 * 26 25 24 28 28 C 1.53002 * 109.47078 * 179.97438 * 26 25 24 29 29 C 1.53002 * 109.46744 * 299.99856 * 21 2 1 30 30 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46962 * 300.00420 * 1 2 3 32 32 H 1.09002 * 109.47155 * 59.99901 * 1 2 3 33 33 H 0.96997 * 120.00020 * 265.00041 * 4 2 1 34 34 H 1.08002 * 119.95553 * 359.96145 * 8 7 5 35 35 H 1.08004 * 119.66129 * 180.02562 * 9 8 7 36 36 H 1.08007 * 119.71101 * 179.70463 * 10 9 8 37 37 H 1.08004 * 120.05754 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99211 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46996 * 300.00033 * 23 21 2 40 40 H 1.08995 * 109.47240 * 59.99796 * 23 21 2 41 41 H 1.08996 * 109.47070 * 179.97438 * 24 23 21 42 42 H 1.09002 * 109.46776 * 59.99577 * 24 23 21 43 43 H 1.08995 * 109.47203 * 299.99808 * 25 24 23 44 44 H 1.09002 * 109.46733 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47248 * 180.02562 * 28 26 25 46 46 H 1.09002 * 109.46733 * 299.99775 * 28 26 25 47 47 H 1.08995 * 109.47203 * 59.99832 * 28 26 25 48 48 H 1.08995 * 109.47203 * 299.99808 * 29 21 2 49 49 H 1.09003 * 109.47248 * 60.00140 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3572 6 8 1.8581 1.1617 -2.4117 7 6 2.6379 -0.7136 -3.5611 8 6 3.0847 -2.0296 -3.4787 9 6 3.5437 -2.6777 -4.6099 10 6 3.5662 -2.0297 -5.8374 11 6 3.1311 -0.7292 -5.9503 12 6 2.6591 -0.0468 -4.8140 13 6 2.2109 1.2847 -4.9190 14 1 1.3958 1.6305 -4.3004 15 6 2.8232 2.1615 -5.8268 16 7 3.9185 1.8040 -6.4424 17 14 2.0723 3.8400 -6.1555 18 1 0.8431 4.0010 -5.3381 19 1 3.0489 4.8986 -5.7938 20 1 1.7283 3.9551 -7.5955 21 6 2.0400 -0.7212 1.2493 22 1 1.6767 -1.7489 1.2493 23 6 3.5700 -0.7218 1.2489 24 6 4.0801 -1.4425 2.4985 25 6 3.5706 -0.7202 3.7474 26 6 2.0406 -0.7197 3.7477 27 1 1.6768 -1.7472 3.7484 28 6 1.5312 0.0021 4.9969 29 6 1.5300 0.0001 2.4985 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.0729 -2.5447 -2.5295 35 1 3.8883 -3.6988 -4.5381 36 1 3.9325 -2.5494 -6.7105 37 1 3.1527 -0.2329 -6.9093 38 1 4.3417 2.4101 -7.0705 39 1 3.9329 -1.2359 0.3589 40 1 3.9337 0.3057 1.2487 41 1 5.1700 -1.4433 2.4980 42 1 3.7163 -2.4700 2.4992 43 1 3.9343 0.3072 3.7467 44 1 3.9336 -1.2339 4.6376 45 1 0.4411 0.0021 4.9974 46 1 1.8945 -0.5118 5.8869 47 1 1.8949 1.0295 4.9967 48 1 1.8934 1.0277 2.4984 49 1 0.4400 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601620437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:26 Heat of formation + Delta-G solvation = -55.848026 kcal Electronic energy + Delta-G solvation = -26773.135434 eV Core-core repulsion = 23276.938535 eV Total energy + Delta-G solvation = -3496.196899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.70038 -38.50890 -36.80812 -34.97799 -33.68070 -32.36659 -31.60397 -29.89311 -29.43273 -28.39333 -26.48014 -25.40378 -23.88641 -22.15362 -21.52779 -20.95152 -20.01560 -19.98641 -19.17083 -17.45878 -16.33950 -15.66482 -15.30682 -15.10998 -14.52720 -14.42585 -14.22266 -13.97105 -13.86182 -13.43458 -13.31529 -13.17019 -12.83040 -12.68805 -12.51475 -12.41361 -12.09564 -11.87409 -11.57509 -11.49971 -11.32931 -11.21822 -11.11307 -11.02082 -10.97505 -10.73148 -10.63833 -10.50342 -10.41876 -10.09114 -10.03580 -9.95029 -9.63088 -9.25204 -8.33835 -8.27657 -7.55715 -7.32574 -6.76969 -4.35281 2.39927 2.82350 3.12353 3.21968 3.24173 3.98374 4.00624 4.22017 4.52747 4.59690 4.68436 4.72430 4.97174 5.09835 5.19200 5.30836 5.39266 5.42163 5.51429 5.55650 5.62041 5.67932 5.69761 5.71689 5.78993 5.85854 5.91845 5.97943 6.00227 6.07620 6.12043 6.15295 6.18939 6.22791 6.27254 6.31228 6.39308 6.47831 6.59140 6.69337 6.98565 7.13752 7.22001 7.32047 7.49448 7.65461 7.91929 8.01952 8.20954 8.46192 8.70462 8.85962 8.93509 9.48832 10.18568 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.003511 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.799523 B = 7973.657018 C = 8988.735129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.742 5.742 5 C 0.566 3.434 6 O -0.538 6.538 7 C -0.260 4.260 8 C -0.057 4.057 9 C -0.247 4.247 10 C -0.096 4.096 11 C -0.149 4.149 12 C 0.146 3.854 13 C -0.416 4.416 14 H 0.105 0.895 15 C 0.069 3.931 16 N -0.794 5.794 17 Si 0.915 3.085 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.091 4.091 22 H 0.070 0.930 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.091 4.091 27 H 0.067 0.933 28 C -0.147 4.147 29 C -0.108 4.108 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.389 0.611 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -5.071 15.852 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.100 0.900 4 N -0.396 5.396 5 C 0.359 3.641 6 O -0.417 6.417 7 C -0.265 4.265 8 C -0.076 4.076 9 C -0.266 4.266 10 C -0.115 4.115 11 C -0.168 4.168 12 C 0.141 3.859 13 C -0.444 4.444 14 H 0.123 0.877 15 C -0.149 4.149 16 N -0.420 5.420 17 Si 0.740 3.260 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.110 4.110 22 H 0.089 0.911 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.110 4.110 27 H 0.086 0.914 28 C -0.205 4.205 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.317 -4.090 15.644 16.335 hybrid contribution 0.085 0.155 -0.193 0.262 sum -2.232 -3.936 15.450 16.099 Atomic orbital electron populations 1.22229 0.96260 1.01527 1.02088 1.20745 0.93320 0.97449 0.83942 0.90004 1.46079 1.70389 1.13491 1.09659 1.18400 0.76841 0.86367 0.82458 1.90668 1.50593 1.15863 1.84546 1.19490 1.17924 0.96054 0.93059 1.20639 0.97078 0.93632 0.96242 1.20276 1.13308 0.99258 0.93767 1.20795 0.99305 0.95363 0.96031 1.21355 1.03669 0.92894 0.98887 1.17489 0.86817 0.92687 0.88865 1.20199 1.14688 0.94392 1.15114 0.87695 1.26118 0.94051 1.01332 0.93391 1.69730 1.14394 1.37152 1.20676 0.86126 0.80520 0.80849 0.78511 1.18056 1.19942 1.19930 1.21408 0.95777 0.99755 0.94051 0.91117 1.21567 0.94776 1.01182 0.97665 1.21534 1.00109 0.99274 0.94698 1.21601 0.95128 1.00793 0.97630 1.21116 0.95494 0.99669 0.94679 0.91408 1.21832 1.00862 1.00506 0.97257 1.21651 1.00497 0.99417 0.92976 0.93024 0.92263 0.91954 0.77625 0.89344 0.89199 0.89159 0.86527 0.90840 0.91488 0.91909 0.92169 0.92204 0.92043 0.92442 0.92776 0.92961 0.92727 0.91763 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.13 37.16 0.34 -1.94 16 2 C 0.15 2.25 2.16 -67.93 -0.15 2.10 16 3 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.74 -12.93 4.33 -54.87 -0.24 -13.17 16 5 C 0.57 12.98 7.68 -12.51 -0.10 12.88 16 6 O -0.54 -14.10 13.25 5.27 0.07 -14.03 16 7 C -0.26 -6.35 5.92 -104.37 -0.62 -6.97 16 8 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 9 C -0.25 -5.27 10.03 -39.37 -0.39 -5.66 16 10 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 11 C -0.15 -3.81 8.62 -38.89 -0.34 -4.14 16 12 C 0.15 3.92 5.51 -106.54 -0.59 3.34 16 13 C -0.42 -11.50 7.68 -37.81 -0.29 -11.79 16 14 H 0.11 3.01 5.92 -52.48 -0.31 2.70 16 15 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 16 N -0.79 -20.80 11.14 55.56 0.62 -20.18 16 17 Si 0.92 19.86 29.57 -169.99 -5.03 14.84 16 18 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.09 -1.04 1.82 -90.62 -0.17 -1.21 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.11 -1.35 5.05 -26.73 -0.13 -1.48 16 24 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 25 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 26 C -0.09 -0.79 2.72 -90.65 -0.25 -1.04 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 29 C -0.11 -1.07 4.13 -26.76 -0.11 -1.18 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 5.98 6.45 -40.82 -0.26 5.72 16 34 H 0.09 1.56 6.44 -52.49 -0.34 1.22 16 35 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.12 3.05 6.59 -52.48 -0.35 2.70 16 38 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 39 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -29.12 378.70 -10.65 -39.78 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.18 Total: 9.88 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.60 Total: -22.82 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.38 Total: -33.35 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.12 -10.65 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds