Wall clock time and date at job start Tue Mar 31 2020 12:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47525 * 2 1 4 4 N 1.46505 * 109.47243 * 239.99720 * 2 1 3 5 5 C 1.34780 * 119.99838 * 84.99682 * 4 2 1 6 6 O 1.21609 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.47432 * 119.99778 * 180.02562 * 5 4 2 8 8 C 1.39223 * 120.28236 * 354.15970 * 7 5 4 9 9 C 1.38222 * 120.09131 * 179.97438 * 8 7 5 10 10 C 1.38825 * 120.67277 * 0.02562 * 9 8 7 11 11 C 1.37595 * 120.57441 * 359.97438 * 10 9 8 12 12 C 1.40704 * 119.88098 * 0.02562 * 11 10 9 13 13 C 1.40885 * 120.32756 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00073 * 145.83389 * 13 12 11 15 15 C 1.40279 * 120.00187 * 325.83237 * 13 12 11 16 16 N 1.30631 * 119.99591 * 350.75847 * 15 13 12 17 17 Si 1.86801 * 120.00021 * 170.75445 * 15 13 12 18 18 H 1.48494 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46929 * 120.00271 * 17 15 13 20 20 H 1.48499 * 109.47137 * 240.00061 * 17 15 13 21 21 C 1.53004 * 109.47353 * 119.99964 * 2 1 3 22 22 H 1.08995 * 109.47114 * 59.99718 * 21 2 1 23 23 C 1.52996 * 109.47353 * 179.97438 * 21 2 1 24 24 C 1.53004 * 109.47353 * 179.97438 * 23 21 2 25 25 C 1.53002 * 109.46744 * 299.99856 * 24 23 21 26 26 C 1.52996 * 109.47078 * 59.99976 * 25 24 23 27 27 H 1.09002 * 109.47525 * 59.99616 * 26 25 24 28 28 C 1.53002 * 109.47078 * 179.97438 * 26 25 24 29 29 C 1.53002 * 109.46744 * 299.99856 * 21 2 1 30 30 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46962 * 300.00420 * 1 2 3 32 32 H 1.09002 * 109.47155 * 59.99901 * 1 2 3 33 33 H 0.96997 * 120.00020 * 265.00041 * 4 2 1 34 34 H 1.08002 * 119.95553 * 359.96145 * 8 7 5 35 35 H 1.08004 * 119.66129 * 180.02562 * 9 8 7 36 36 H 1.08007 * 119.71101 * 179.70463 * 10 9 8 37 37 H 1.08004 * 120.05754 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99211 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46996 * 300.00033 * 23 21 2 40 40 H 1.08995 * 109.47240 * 59.99796 * 23 21 2 41 41 H 1.08996 * 109.47070 * 179.97438 * 24 23 21 42 42 H 1.09002 * 109.46776 * 59.99577 * 24 23 21 43 43 H 1.08995 * 109.47203 * 299.99808 * 25 24 23 44 44 H 1.09002 * 109.46733 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47248 * 180.02562 * 28 26 25 46 46 H 1.09002 * 109.46733 * 299.99775 * 28 26 25 47 47 H 1.08995 * 109.47203 * 59.99832 * 28 26 25 48 48 H 1.08995 * 109.47203 * 299.99808 * 29 21 2 49 49 H 1.09003 * 109.47248 * 60.00140 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3572 6 8 1.8581 1.1617 -2.4117 7 6 2.6379 -0.7136 -3.5611 8 6 3.0847 -2.0296 -3.4787 9 6 3.5437 -2.6777 -4.6099 10 6 3.5662 -2.0297 -5.8374 11 6 3.1311 -0.7292 -5.9503 12 6 2.6591 -0.0468 -4.8140 13 6 2.2109 1.2847 -4.9190 14 1 1.3958 1.6305 -4.3004 15 6 2.8232 2.1615 -5.8268 16 7 3.9185 1.8040 -6.4424 17 14 2.0723 3.8400 -6.1555 18 1 0.8431 4.0010 -5.3381 19 1 3.0489 4.8986 -5.7938 20 1 1.7283 3.9551 -7.5955 21 6 2.0400 -0.7212 1.2493 22 1 1.6767 -1.7489 1.2493 23 6 3.5700 -0.7218 1.2489 24 6 4.0801 -1.4425 2.4985 25 6 3.5706 -0.7202 3.7474 26 6 2.0406 -0.7197 3.7477 27 1 1.6768 -1.7472 3.7484 28 6 1.5312 0.0021 4.9969 29 6 1.5300 0.0001 2.4985 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.0729 -2.5447 -2.5295 35 1 3.8883 -3.6988 -4.5381 36 1 3.9325 -2.5494 -6.7105 37 1 3.1527 -0.2329 -6.9093 38 1 4.3417 2.4101 -7.0705 39 1 3.9329 -1.2359 0.3589 40 1 3.9337 0.3057 1.2487 41 1 5.1700 -1.4433 2.4980 42 1 3.7163 -2.4700 2.4992 43 1 3.9343 0.3072 3.7467 44 1 3.9336 -1.2339 4.6376 45 1 0.4411 0.0021 4.9974 46 1 1.8945 -0.5118 5.8869 47 1 1.8949 1.0295 4.9967 48 1 1.8934 1.0277 2.4984 49 1 0.4400 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:25 Heat of formation + Delta-G solvation = -69.949599 kcal Electronic energy + Delta-G solvation = -26773.746924 eV Core-core repulsion = 23276.938535 eV Total energy + Delta-G solvation = -3496.808389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04177 -39.87040 -38.51367 -36.37075 -35.53728 -33.28727 -32.95068 -31.72502 -31.04984 -29.56874 -27.43285 -27.09182 -25.12606 -23.71825 -22.75707 -22.34803 -21.28529 -21.14207 -20.48474 -19.32269 -17.99877 -17.20024 -16.88605 -16.25593 -15.93376 -15.71220 -15.48142 -15.32428 -15.17420 -14.86173 -14.49897 -14.46179 -14.37857 -13.99872 -13.88061 -13.57458 -13.32830 -13.19683 -12.87738 -12.84286 -12.67920 -12.51557 -12.41407 -12.35415 -12.28156 -12.10418 -11.88362 -11.82064 -11.64450 -11.47211 -11.28810 -11.14466 -10.96053 -10.82686 -10.19225 -9.85723 -9.37523 -9.21720 -8.67158 -6.35159 0.54305 1.01136 1.31987 1.46633 1.48332 2.20817 2.39857 2.51919 2.79916 3.60363 3.73608 3.80637 3.85358 4.12906 4.23501 4.30006 4.36512 4.37902 4.43119 4.49504 4.59957 4.60925 4.63654 4.69395 4.73121 4.84343 4.86299 4.89040 4.94874 5.05229 5.08936 5.11991 5.15939 5.22396 5.25737 5.26373 5.33977 5.35586 5.37484 5.41480 5.47814 5.53860 5.63212 5.66961 5.80714 5.84815 6.07618 6.12008 6.35678 6.67018 6.83238 6.94548 7.04775 7.74001 8.30676 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.003511 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.799523 B = 7973.657018 C = 8988.735129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.050 0.950 4 N -0.721 5.721 5 C 0.560 3.440 6 O -0.580 6.580 7 C -0.279 4.279 8 C -0.054 4.054 9 C -0.236 4.236 10 C -0.093 4.093 11 C -0.178 4.178 12 C 0.114 3.886 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.031 3.969 16 N -0.825 5.825 17 Si 0.978 3.022 18 H -0.270 1.270 19 H -0.267 1.267 20 H -0.254 1.254 21 C -0.078 4.078 22 H 0.090 0.910 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.087 4.087 27 H 0.078 0.922 28 C -0.146 4.146 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.403 0.597 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.288 0.712 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -7.665 18.019 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.068 0.932 4 N -0.374 5.374 5 C 0.353 3.647 6 O -0.462 6.462 7 C -0.283 4.283 8 C -0.072 4.072 9 C -0.255 4.255 10 C -0.111 4.111 11 C -0.198 4.198 12 C 0.110 3.890 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.451 5.451 17 Si 0.799 3.201 18 H -0.194 1.194 19 H -0.192 1.192 20 H -0.178 1.178 21 C -0.097 4.097 22 H 0.108 0.892 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.105 4.105 27 H 0.096 0.904 28 C -0.203 4.203 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.240 0.760 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.259 -6.735 17.837 19.200 hybrid contribution 0.107 0.770 -0.753 1.083 sum -2.152 -5.965 17.084 18.223 Atomic orbital electron populations 1.22167 0.95188 1.02524 1.01563 1.20930 0.94127 0.96214 0.84372 0.93173 1.45844 1.68805 1.13901 1.08831 1.18422 0.76637 0.85953 0.83668 1.90647 1.52420 1.17755 1.85376 1.19888 1.17910 0.97588 0.92958 1.21055 0.95392 0.92329 0.98434 1.20801 1.11104 1.00882 0.92755 1.21178 0.97699 0.94234 0.98037 1.21294 1.06109 0.94429 0.97944 1.17872 0.87628 0.93036 0.90438 1.20130 1.15794 0.95782 1.16865 0.90218 1.26782 0.94238 1.04390 0.92936 1.69753 1.15207 1.38564 1.21610 0.85226 0.79080 0.76738 0.79037 1.19448 1.19223 1.17778 1.21330 0.95441 1.00300 0.92610 0.89204 1.21556 0.95042 1.00176 0.98502 1.21498 1.00227 0.99625 0.93738 1.21605 0.95368 1.00373 0.97747 1.21090 0.95205 1.00042 0.94166 0.90403 1.21815 1.01192 1.00216 0.97103 1.21651 1.01017 0.98808 0.92894 0.91152 0.89735 0.95578 0.75996 0.85050 0.84956 0.86290 0.88311 0.90116 0.92738 0.93957 0.92049 0.90919 0.92950 0.90966 0.92277 0.91951 0.93237 0.92950 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.13 71.98 0.66 -3.61 16 2 C 0.15 4.38 2.16 44.99 0.10 4.48 16 3 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 4 N -0.72 -24.82 4.33 -445.77 -1.93 -26.75 16 5 C 0.56 26.52 7.68 86.66 0.67 27.18 16 6 O -0.58 -32.35 13.25 -4.06 -0.05 -32.41 16 7 C -0.28 -13.80 5.92 -19.70 -0.12 -13.91 16 8 C -0.05 -2.16 9.52 22.50 0.21 -1.94 16 9 C -0.24 -9.30 10.03 22.41 0.22 -9.08 16 10 C -0.09 -4.09 10.01 22.26 0.22 -3.87 16 11 C -0.18 -9.38 8.62 22.72 0.20 -9.18 16 12 C 0.11 6.41 5.51 -21.11 -0.12 6.29 16 13 C -0.46 -26.95 7.68 23.41 0.18 -26.77 16 14 H 0.08 4.97 5.92 -2.91 -0.02 4.95 16 15 C 0.03 1.69 5.25 85.37 0.45 2.14 16 16 N -0.82 -45.15 11.14 21.88 0.24 -44.90 16 17 Si 0.98 42.83 29.57 68.60 2.03 44.86 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 21 C -0.08 -1.63 1.82 -10.79 -0.02 -1.65 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 C -0.12 -2.58 5.05 30.59 0.15 -2.42 16 24 C -0.11 -1.93 5.92 30.60 0.18 -1.75 16 25 C -0.11 -1.73 5.20 30.59 0.16 -1.57 16 26 C -0.09 -1.25 2.72 -10.81 -0.03 -1.28 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 29 C -0.11 -1.89 4.13 30.58 0.13 -1.76 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.86 6.43 -2.39 -0.02 1.85 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.40 11.48 6.45 -92.71 -0.60 10.88 16 34 H 0.13 4.08 6.44 -2.91 -0.02 4.06 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.10 5.43 6.59 -2.91 -0.02 5.41 16 38 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 39 H 0.05 1.34 7.44 -2.38 -0.02 1.32 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.24 6.43 -2.39 -0.02 1.22 16 Total: -1.00 -68.56 378.70 4.53 -64.04 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.33 Total: 35.04 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 3.91 Total: -39.88 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.69 Total: -71.65 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.56 4.53 -64.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.915 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds