Wall clock time and date at job start Tue Mar 31 2020 11:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09000 * 109.47104 * 304.99909 * 3 2 1 5 5 N 1.46500 * 109.47112 * 64.99913 * 3 2 1 6 6 C 1.34776 * 119.99996 * 275.00109 * 5 3 2 7 7 O 1.21577 * 120.00225 * 0.02562 * 6 5 3 8 8 C 1.47645 * 119.99535 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89294 * 180.02562 * 8 6 5 10 10 C 1.36310 * 120.11003 * 180.27632 * 9 8 6 11 11 C 1.40893 * 119.89094 * 359.50007 * 10 9 8 12 12 C 1.41102 * 120.10510 * 180.22834 * 11 10 9 13 13 H 1.07998 * 120.00085 * 204.79439 * 12 11 10 14 14 C 1.40229 * 120.00170 * 24.80056 * 12 11 10 15 15 N 1.30645 * 119.99784 * 17.73895 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 197.74141 * 14 12 11 17 17 H 1.48500 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47119 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47053 * 239.99501 * 16 14 12 20 20 C 1.40888 * 119.79217 * 0.49526 * 11 10 9 21 21 C 1.36318 * 119.88896 * 359.75809 * 20 11 10 22 22 C 1.52998 * 109.47396 * 184.99887 * 3 2 1 23 23 C 1.53000 * 109.47366 * 300.00066 * 22 3 2 24 24 C 1.52999 * 109.47153 * 179.97438 * 23 22 3 25 25 C 1.52994 * 109.47049 * 60.00462 * 24 23 22 26 26 C 1.53007 * 109.47014 * 299.99639 * 25 24 23 27 27 C 1.52999 * 109.46917 * 60.00281 * 26 25 24 28 28 H 1.08997 * 109.47112 * 299.99867 * 1 2 3 29 29 H 1.08998 * 109.47358 * 59.99959 * 1 2 3 30 30 H 1.08998 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47112 * 240.00133 * 2 1 3 32 32 H 1.08998 * 109.47358 * 120.00041 * 2 1 3 33 33 H 0.97005 * 119.99625 * 95.00220 * 5 3 2 34 34 H 1.08005 * 119.94624 * 359.97438 * 9 8 6 35 35 H 1.08000 * 120.05927 * 179.73728 * 10 9 8 36 36 H 0.97002 * 119.99718 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.05588 * 179.73431 * 20 11 10 38 38 H 1.08002 * 119.94881 * 179.97438 * 21 20 11 39 39 H 1.09003 * 109.46949 * 60.00053 * 22 3 2 40 40 H 1.09003 * 109.47076 * 299.99909 * 23 22 3 41 41 H 1.09010 * 109.46789 * 59.99633 * 23 22 3 42 42 H 1.09001 * 109.47301 * 299.99661 * 24 23 22 43 43 H 1.09000 * 109.46800 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47631 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47215 * 59.99557 * 25 24 23 46 46 H 1.08989 * 109.47039 * 299.99799 * 26 25 24 47 47 H 1.09002 * 109.46825 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.46800 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47473 * 59.99983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3416 2.6318 0.4321 8 6 0.0444 3.3240 2.6287 9 6 -1.2210 3.9117 2.7462 10 6 -1.5842 4.5268 3.9072 11 6 -0.6879 4.5612 4.9937 12 6 -1.0611 5.1925 6.1992 13 1 -0.3024 5.5767 6.8649 14 6 -2.4170 5.3208 6.5331 15 7 -3.3099 4.5771 5.9361 16 14 -2.9465 6.5552 7.8312 17 1 -1.7527 7.2681 8.3526 18 1 -3.8850 7.5356 7.2285 19 1 -3.6228 5.8429 8.9450 20 6 0.5842 3.9684 4.8708 21 6 0.9404 3.3601 3.7040 22 6 3.5648 1.4444 -0.1257 23 6 4.1749 0.6878 1.0559 24 6 5.6997 0.6892 0.9298 25 6 6.2101 2.1315 0.9296 26 6 5.6000 2.8882 -0.2521 27 6 4.0752 2.8868 -0.1260 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1232 1.9978 34 1 -1.9086 3.8820 1.9139 35 1 -2.5589 4.9836 3.9954 36 1 -4.2478 4.6661 6.1667 37 1 1.2762 3.9961 5.6995 38 1 1.9155 2.9057 3.6086 39 1 3.8532 0.9571 -1.0571 40 1 3.8865 1.1751 1.9873 41 1 3.8115 -0.3399 1.0559 42 1 5.9877 0.2016 -0.0015 43 1 6.1343 0.1498 1.7714 44 1 7.2965 2.1326 0.8402 45 1 5.9220 2.6190 1.8610 46 1 5.8880 2.4007 -1.1833 47 1 5.9633 3.9159 -0.2519 48 1 3.6406 3.4255 -0.9680 49 1 3.7871 3.3743 0.8054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611147564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:37 Heat of formation + Delta-G solvation = -60.605849 kcal Electronic energy + Delta-G solvation = -26718.487457 eV Core-core repulsion = 23222.084243 eV Total energy + Delta-G solvation = -3496.403214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.00107 -38.38171 -37.08903 -35.10951 -33.87529 -32.02507 -30.93739 -30.67951 -29.97236 -29.34597 -26.27027 -25.27413 -23.02153 -22.17022 -21.91395 -21.01290 -20.32833 -19.86022 -19.05870 -17.50907 -16.86506 -15.95324 -15.39627 -15.29732 -14.88481 -14.29845 -14.24180 -14.01220 -13.87612 -13.82436 -13.18898 -13.01980 -12.90572 -12.82073 -12.59272 -12.28384 -12.19502 -11.90447 -11.69379 -11.38488 -11.27468 -11.25541 -11.22600 -11.18679 -11.06200 -10.89681 -10.64083 -10.56980 -10.50781 -10.06039 -10.01322 -9.97382 -9.52658 -9.31731 -8.87472 -8.42062 -7.67930 -7.54132 -7.00344 -4.58281 2.27162 2.91631 2.96608 3.01843 3.04782 3.75744 3.88158 3.92354 4.50958 4.57206 4.61025 4.64465 5.01410 5.09173 5.16586 5.29414 5.37397 5.40933 5.43278 5.49694 5.56789 5.60691 5.62943 5.82735 5.86788 5.90424 5.97914 6.01124 6.05070 6.07000 6.07808 6.14543 6.21704 6.25140 6.29933 6.30991 6.40414 6.50744 6.79055 6.82307 6.86044 7.06951 7.09814 7.15751 7.45801 7.64093 7.82061 7.90427 8.07616 8.32585 8.45473 8.65144 8.77698 9.16839 9.91630 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003090 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.591334 B = 9058.852200 C = 9992.550418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.152 3.848 4 H 0.083 0.917 5 N -0.734 5.734 6 C 0.571 3.429 7 O -0.568 6.568 8 C -0.282 4.282 9 C -0.036 4.036 10 C -0.183 4.183 11 C 0.128 3.872 12 C -0.445 4.445 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.770 5.770 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.236 4.236 21 C -0.050 4.050 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.115 4.115 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.393 0.607 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 -5.573 -7.373 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.047 3.953 4 H 0.101 0.899 5 N -0.387 5.387 6 C 0.366 3.634 7 O -0.450 6.450 8 C -0.287 4.287 9 C -0.056 4.056 10 C -0.202 4.202 11 C 0.125 3.875 12 C -0.472 4.472 13 H 0.102 0.898 14 C -0.147 4.147 15 N -0.393 5.393 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.255 4.255 21 C -0.069 4.069 22 C -0.111 4.111 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.153 4.153 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.383 -5.660 -8.041 15.813 hybrid contribution -0.016 0.403 1.013 1.090 sum 12.367 -5.256 -7.029 15.165 Atomic orbital electron populations 1.21800 0.94841 0.99887 1.03669 1.21978 0.97197 0.96511 1.01342 1.20891 0.92909 0.92991 0.88552 0.89909 1.46013 1.17506 1.59443 1.15769 1.18503 0.80302 0.76564 0.88019 1.90639 1.51673 1.61364 1.41276 1.18960 0.98360 1.16873 0.94474 1.20477 0.93731 0.94576 0.96783 1.21013 1.01466 1.05496 0.92216 1.17775 0.90621 0.86780 0.92328 1.19853 0.92176 1.31200 1.03996 0.89784 1.26099 0.96562 0.94870 0.97216 1.69758 1.03486 1.30200 1.35846 0.86188 0.79655 0.80549 0.80036 1.18098 1.19373 1.19701 1.20658 0.99280 1.08020 0.97543 1.20343 0.96018 0.97179 0.93343 1.21446 0.93933 0.96491 0.99208 1.21654 0.95024 1.00537 0.98341 1.21519 0.95755 0.96670 1.01563 1.21551 0.99521 0.95834 0.98944 1.21526 0.95703 1.00045 0.98271 1.21573 0.94926 0.96063 1.02694 0.91653 0.92471 0.94332 0.92087 0.92003 0.77039 0.88241 0.86244 0.90256 0.88617 0.89518 0.90355 0.91913 0.91467 0.92199 0.92175 0.92401 0.91868 0.92289 0.92181 0.92000 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.51 37.16 0.32 -1.95 16 2 C -0.13 -1.69 5.11 -26.73 -0.14 -1.83 16 3 C 0.15 2.04 2.00 -67.93 -0.14 1.91 16 4 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 5 N -0.73 -11.59 4.21 -54.81 -0.23 -11.82 16 6 C 0.57 11.68 6.33 -12.42 -0.08 11.61 16 7 O -0.57 -12.92 13.45 5.30 0.07 -12.85 16 8 C -0.28 -6.36 5.89 -104.73 -0.62 -6.98 16 9 C -0.04 -0.89 9.52 -39.61 -0.38 -1.26 16 10 C -0.18 -4.67 8.63 -39.27 -0.34 -5.01 16 11 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 12 C -0.44 -11.09 9.04 -37.75 -0.34 -11.43 16 13 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 14 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 15 N -0.77 -18.91 10.96 55.56 0.61 -18.30 16 16 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.24 -5.44 9.73 -39.27 -0.38 -5.82 16 21 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 22 C -0.09 -0.96 2.04 -90.62 -0.18 -1.14 16 23 C -0.12 -1.13 4.68 -26.73 -0.13 -1.26 16 24 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 25 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 26 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 27 C -0.11 -1.24 5.05 -26.73 -0.13 -1.37 16 28 H 0.06 1.23 5.64 -51.93 -0.29 0.94 16 29 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.77 6.71 -51.93 -0.35 0.42 16 33 H 0.39 5.68 4.65 -40.82 -0.19 5.49 16 34 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 35 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 36 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.09 1.52 6.37 -52.49 -0.33 1.18 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.65 6.51 -51.93 -0.34 0.31 16 41 H 0.07 0.63 6.54 -51.92 -0.34 0.29 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.50 8.14 -51.94 -0.42 0.07 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.83 7.45 -51.93 -0.39 0.44 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -27.11 372.80 -10.99 -38.10 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.95 Total: 12.03 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -4.07 Total: -25.21 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.38 Total: -30.12 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.11 -10.99 -38.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611147564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.505 kcal (2) G-P(sol) polarization free energy of solvation -27.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds