Wall clock time and date at job start Tue Mar 31 2020 11:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09000 * 109.47104 * 304.99909 * 3 2 1 5 5 N 1.46500 * 109.47112 * 64.99913 * 3 2 1 6 6 C 1.34776 * 119.99996 * 275.00109 * 5 3 2 7 7 O 1.21577 * 120.00225 * 0.02562 * 6 5 3 8 8 C 1.47645 * 119.99535 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89294 * 180.02562 * 8 6 5 10 10 C 1.36310 * 120.11003 * 180.27632 * 9 8 6 11 11 C 1.40893 * 119.89094 * 359.50007 * 10 9 8 12 12 C 1.41102 * 120.10510 * 180.22834 * 11 10 9 13 13 H 1.07998 * 120.00085 * 204.79439 * 12 11 10 14 14 C 1.40229 * 120.00170 * 24.80056 * 12 11 10 15 15 N 1.30645 * 119.99784 * 17.73895 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 197.74141 * 14 12 11 17 17 H 1.48500 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47119 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47053 * 239.99501 * 16 14 12 20 20 C 1.40888 * 119.79217 * 0.49526 * 11 10 9 21 21 C 1.36318 * 119.88896 * 359.75809 * 20 11 10 22 22 C 1.52998 * 109.47396 * 184.99887 * 3 2 1 23 23 C 1.53000 * 109.47366 * 300.00066 * 22 3 2 24 24 C 1.52999 * 109.47153 * 179.97438 * 23 22 3 25 25 C 1.52994 * 109.47049 * 60.00462 * 24 23 22 26 26 C 1.53007 * 109.47014 * 299.99639 * 25 24 23 27 27 C 1.52999 * 109.46917 * 60.00281 * 26 25 24 28 28 H 1.08997 * 109.47112 * 299.99867 * 1 2 3 29 29 H 1.08998 * 109.47358 * 59.99959 * 1 2 3 30 30 H 1.08998 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47112 * 240.00133 * 2 1 3 32 32 H 1.08998 * 109.47358 * 120.00041 * 2 1 3 33 33 H 0.97005 * 119.99625 * 95.00220 * 5 3 2 34 34 H 1.08005 * 119.94624 * 359.97438 * 9 8 6 35 35 H 1.08000 * 120.05927 * 179.73728 * 10 9 8 36 36 H 0.97002 * 119.99718 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.05588 * 179.73431 * 20 11 10 38 38 H 1.08002 * 119.94881 * 179.97438 * 21 20 11 39 39 H 1.09003 * 109.46949 * 60.00053 * 22 3 2 40 40 H 1.09003 * 109.47076 * 299.99909 * 23 22 3 41 41 H 1.09010 * 109.46789 * 59.99633 * 23 22 3 42 42 H 1.09001 * 109.47301 * 299.99661 * 24 23 22 43 43 H 1.09000 * 109.46800 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47631 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47215 * 59.99557 * 25 24 23 46 46 H 1.08989 * 109.47039 * 299.99799 * 26 25 24 47 47 H 1.09002 * 109.46825 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.46800 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47473 * 59.99983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3416 2.6318 0.4321 8 6 0.0444 3.3240 2.6287 9 6 -1.2210 3.9117 2.7462 10 6 -1.5842 4.5268 3.9072 11 6 -0.6879 4.5612 4.9937 12 6 -1.0611 5.1925 6.1992 13 1 -0.3024 5.5767 6.8649 14 6 -2.4170 5.3208 6.5331 15 7 -3.3099 4.5771 5.9361 16 14 -2.9465 6.5552 7.8312 17 1 -1.7527 7.2681 8.3526 18 1 -3.8850 7.5356 7.2285 19 1 -3.6228 5.8429 8.9450 20 6 0.5842 3.9684 4.8708 21 6 0.9404 3.3601 3.7040 22 6 3.5648 1.4444 -0.1257 23 6 4.1749 0.6878 1.0559 24 6 5.6997 0.6892 0.9298 25 6 6.2101 2.1315 0.9296 26 6 5.6000 2.8882 -0.2521 27 6 4.0752 2.8868 -0.1260 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1232 1.9978 34 1 -1.9086 3.8820 1.9139 35 1 -2.5589 4.9836 3.9954 36 1 -4.2478 4.6661 6.1667 37 1 1.2762 3.9961 5.6995 38 1 1.9155 2.9057 3.6086 39 1 3.8532 0.9571 -1.0571 40 1 3.8865 1.1751 1.9873 41 1 3.8115 -0.3399 1.0559 42 1 5.9877 0.2016 -0.0015 43 1 6.1343 0.1498 1.7714 44 1 7.2965 2.1326 0.8402 45 1 5.9220 2.6190 1.8610 46 1 5.8880 2.4007 -1.1833 47 1 5.9633 3.9159 -0.2519 48 1 3.6406 3.4255 -0.9680 49 1 3.7871 3.3743 0.8054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611147564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:36 Heat of formation + Delta-G solvation = -72.209405 kcal Electronic energy + Delta-G solvation = -26718.990625 eV Core-core repulsion = 23222.084243 eV Total energy + Delta-G solvation = -3496.906382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29187 -39.70755 -38.72245 -36.30974 -35.68091 -33.44493 -31.93719 -31.72163 -31.51403 -31.07213 -27.87133 -26.57302 -23.95755 -23.75008 -22.80093 -22.78099 -21.42287 -21.31686 -20.11856 -19.33642 -18.44238 -17.22723 -17.05738 -16.32114 -16.22177 -15.73714 -15.55759 -15.19122 -15.04947 -14.83634 -14.59407 -14.52832 -14.17072 -14.04890 -13.96876 -13.74960 -13.61871 -13.19537 -13.05122 -12.83469 -12.73858 -12.58894 -12.39374 -12.29696 -12.12141 -11.99532 -11.93254 -11.75971 -11.68021 -11.35917 -11.28293 -11.12075 -10.87729 -10.80848 -10.55803 -9.82809 -9.56081 -9.38823 -8.78549 -6.47565 0.48057 1.15258 1.37360 1.41827 1.54670 2.14071 2.21266 2.50289 2.82629 3.61583 3.70535 3.80732 3.85307 4.18676 4.20625 4.26461 4.31824 4.36238 4.40965 4.42155 4.47218 4.59301 4.66424 4.69170 4.69523 4.81991 4.87404 4.97622 5.01620 5.02255 5.04862 5.09776 5.17921 5.21480 5.27043 5.28733 5.30737 5.32019 5.36571 5.43998 5.49979 5.53787 5.59278 5.63893 5.78567 5.80199 5.98621 6.03010 6.21189 6.56871 6.77591 6.81924 6.91093 7.57845 8.16804 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003090 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.591334 B = 9058.852200 C = 9992.550418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.150 3.850 4 H 0.061 0.939 5 N -0.714 5.714 6 C 0.572 3.428 7 O -0.596 6.596 8 C -0.291 4.291 9 C -0.051 4.051 10 C -0.203 4.203 11 C 0.101 3.899 12 C -0.474 4.474 13 H 0.091 0.909 14 C 0.033 3.967 15 N -0.805 5.805 16 Si 0.988 3.012 17 H -0.251 1.251 18 H -0.265 1.265 19 H -0.263 1.263 20 C -0.246 4.246 21 C -0.039 4.039 22 C -0.081 4.081 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.116 4.116 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.294 0.706 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.860 -6.646 -7.143 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.045 3.955 4 H 0.079 0.921 5 N -0.367 5.367 6 C 0.365 3.635 7 O -0.480 6.480 8 C -0.295 4.295 9 C -0.070 4.070 10 C -0.222 4.222 11 C 0.098 3.902 12 C -0.502 4.502 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.429 5.429 16 Si 0.808 3.192 17 H -0.174 1.174 18 H -0.190 1.190 19 H -0.188 1.188 20 C -0.265 4.265 21 C -0.058 4.058 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.151 4.151 27 C -0.154 4.154 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.103 -6.758 -7.819 18.300 hybrid contribution -0.819 0.669 0.826 1.342 sum 14.284 -6.088 -6.993 17.029 Atomic orbital electron populations 1.21739 0.97147 1.00091 1.00983 1.21962 0.94917 0.96162 1.03346 1.21083 0.95193 0.92903 0.86304 0.92117 1.45843 1.15785 1.57967 1.17060 1.18249 0.81506 0.76809 0.86893 1.90626 1.52922 1.62510 1.41919 1.19280 0.97832 1.16316 0.96073 1.20538 0.94869 0.95339 0.96253 1.20931 1.01286 1.06872 0.93129 1.18127 0.91781 0.87707 0.92632 1.20153 0.93370 1.32356 1.04276 0.89114 1.27012 0.96059 0.96153 0.99265 1.69812 1.04191 1.31532 1.37341 0.85059 0.79255 0.77769 0.77120 1.17441 1.19014 1.18789 1.20928 0.98820 1.07915 0.98878 1.20651 0.97255 0.95922 0.91932 1.21391 0.91156 0.96667 1.00737 1.21664 0.96085 1.00559 0.97218 1.21497 0.94543 0.96560 1.02500 1.21561 1.00255 0.95884 0.98184 1.21495 0.94079 1.00432 0.99122 1.21567 0.96446 0.96023 1.01352 0.95318 0.94151 0.92659 0.89151 0.90769 0.75951 0.89216 0.87984 0.89457 0.86782 0.85358 0.88397 0.92793 0.90686 0.91119 0.91404 0.91208 0.92737 0.91161 0.92199 0.93050 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.51 71.98 0.61 -3.77 16 2 C -0.13 -2.94 5.11 30.59 0.16 -2.78 16 3 C 0.15 3.79 2.00 44.99 0.09 3.88 16 4 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 5 N -0.71 -21.86 4.21 -445.60 -1.87 -23.74 16 6 C 0.57 23.68 6.33 86.73 0.55 24.23 16 7 O -0.60 -28.02 13.45 -3.96 -0.05 -28.08 16 8 C -0.29 -13.33 5.89 -19.93 -0.12 -13.44 16 9 C -0.05 -2.60 9.52 22.25 0.21 -2.39 16 10 C -0.20 -10.93 8.63 22.47 0.19 -10.74 16 11 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 12 C -0.47 -24.14 9.04 23.46 0.21 -23.93 16 13 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 14 C 0.03 1.60 5.14 85.35 0.44 2.04 16 15 N -0.81 -40.84 10.96 21.87 0.24 -40.60 16 16 Si 0.99 35.84 29.60 68.60 2.03 37.87 16 17 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 18 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 20 C -0.25 -11.34 9.73 22.47 0.22 -11.12 16 21 C -0.04 -1.61 9.47 22.25 0.21 -1.40 16 22 C -0.08 -1.46 2.04 -10.79 -0.02 -1.49 16 23 C -0.12 -1.86 4.68 30.59 0.14 -1.72 16 24 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 25 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 26 C -0.11 -1.76 5.92 30.60 0.18 -1.58 16 27 C -0.12 -2.29 5.05 30.59 0.15 -2.14 16 28 H 0.03 1.08 5.64 -2.39 -0.01 1.07 16 29 H 0.04 1.35 7.84 -2.39 -0.02 1.33 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.59 6.71 -2.39 -0.02 1.58 16 33 H 0.40 10.84 4.65 -92.70 -0.43 10.41 16 34 H 0.09 4.65 7.63 -2.91 -0.02 4.63 16 35 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 36 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 37 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.13 4.16 6.37 -2.91 -0.02 4.14 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 0.95 6.51 -2.39 -0.02 0.94 16 41 H 0.07 1.10 6.54 -2.38 -0.02 1.09 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 Total: -1.00 -61.82 372.80 4.33 -57.49 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: 0.51 Total: 41.06 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.48 Total: -44.01 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -1.64 Total: -64.34 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -61.82 4.33 -57.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611147564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.718 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds