Wall clock time and date at job start Tue Mar 31 2020 11:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34810 * 120.00075 * 2 1 4 4 C 1.46429 * 119.99999 * 5.53098 * 3 2 1 5 5 O 1.21694 * 119.99915 * 5.71821 * 4 3 2 6 6 N 1.34778 * 120.00056 * 185.72249 * 4 3 2 7 7 C 1.46496 * 119.99808 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46815 * 90.00292 * 7 6 4 9 9 H 1.08005 * 120.00248 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99745 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00456 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46971 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46639 * 119.99719 * 12 10 8 15 15 H 1.48494 * 109.47127 * 239.99544 * 12 10 8 16 16 C 1.46500 * 119.99666 * 359.97438 * 6 4 3 17 17 C 1.53001 * 109.47254 * 90.00417 * 16 6 4 18 18 C 1.52997 * 109.47272 * 59.99497 * 17 16 6 19 19 C 1.53000 * 109.47041 * 179.97438 * 17 16 6 20 20 C 1.53001 * 109.46834 * 299.99517 * 17 16 6 21 21 C 1.47211 * 120.00101 * 180.02562 * 2 1 3 22 22 C 1.39834 * 120.16447 * 294.99239 * 21 2 1 23 23 C 1.37899 * 119.82262 * 179.97438 * 22 21 2 24 24 C 1.38403 * 120.17166 * 0.02562 * 23 22 21 25 25 C 1.38404 * 120.34475 * 0.02562 * 24 23 22 26 26 C 1.37895 * 120.17090 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47461 * 174.84471 * 1 2 3 28 28 H 1.09002 * 109.46722 * 294.83918 * 1 2 3 29 29 H 1.08996 * 109.47877 * 54.83836 * 1 2 3 30 30 H 1.08002 * 120.00033 * 185.53174 * 3 2 1 31 31 H 1.09001 * 109.47234 * 209.99739 * 7 6 4 32 32 H 1.08997 * 109.47639 * 330.00331 * 7 6 4 33 33 H 0.97000 * 120.00383 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.46960 * 209.99800 * 16 6 4 35 35 H 1.08997 * 109.47611 * 329.99796 * 16 6 4 36 36 H 1.09008 * 109.47448 * 60.00035 * 18 17 16 37 37 H 1.08997 * 109.47132 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47432 * 300.00420 * 18 17 16 39 39 H 1.09001 * 109.47153 * 60.00442 * 19 17 16 40 40 H 1.09000 * 109.46523 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.47151 * 299.99971 * 19 17 16 42 42 H 1.08997 * 109.47192 * 60.00241 * 20 17 16 43 43 H 1.08997 * 109.47028 * 180.02562 * 20 17 16 44 44 H 1.08995 * 109.47402 * 300.00104 * 20 17 16 45 45 H 1.08001 * 120.09040 * 359.70703 * 22 21 2 46 46 H 1.08003 * 119.90886 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.82411 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.91396 * 179.97438 * 25 24 23 49 49 H 1.07993 * 120.08478 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 1.4540 2.4326 0.1222 5 8 0.2546 2.4278 0.3281 6 7 2.1132 3.6026 0.0067 7 6 1.3857 4.8683 0.1284 8 6 1.3762 5.3054 1.5706 9 1 1.8630 4.7007 2.3215 10 6 0.7451 6.4769 1.9316 11 7 0.1519 7.2131 1.0175 12 14 0.7327 7.0185 3.7194 13 1 1.4645 6.0231 4.5432 14 1 1.3944 8.3425 3.8401 15 1 -0.6700 7.1209 4.1959 16 6 3.5571 3.6083 -0.2407 17 6 3.8163 3.6072 -1.7486 18 6 3.1865 4.8528 -2.3752 19 6 5.3243 3.6139 -2.0068 20 6 3.1973 2.3543 -2.3715 21 6 2.2430 -1.2749 -0.0006 22 6 2.1520 -2.1393 1.0948 23 6 2.8441 -3.3320 1.0866 24 6 3.6277 -3.6740 -0.0018 25 6 3.7236 -2.8233 -1.0892 26 6 3.0376 -1.6271 -1.0960 27 1 -0.3634 -1.0235 -0.0923 28 1 -0.3633 0.4317 0.9326 29 1 -0.3635 0.5918 -0.8401 30 1 3.2573 1.1697 -0.0902 31 1 1.8762 5.6292 -0.4786 32 1 0.3608 4.7330 -0.2170 33 1 -0.2918 8.0375 1.2714 34 1 3.9982 4.5010 0.2031 35 1 4.0059 2.7210 0.2058 36 1 3.6275 5.7455 -1.9315 37 1 3.3708 4.8517 -3.4495 38 1 2.1121 4.8485 -2.1912 39 1 5.7734 2.7267 -1.5604 40 1 5.5089 3.6127 -3.0811 41 1 5.7650 4.5066 -1.5631 42 1 2.1230 2.3500 -2.1875 43 1 3.3823 2.3533 -3.4456 44 1 3.6460 1.4670 -1.9250 45 1 1.5447 -1.8715 1.9469 46 1 2.7745 -4.0008 1.9317 47 1 4.1676 -4.6094 -0.0021 48 1 4.3374 -3.0970 -1.9347 49 1 3.1138 -0.9641 -1.9451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729448584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:15 Heat of formation + Delta-G solvation = -5.908217 kcal Electronic energy + Delta-G solvation = -27125.985972 eV Core-core repulsion = 23631.954625 eV Total energy + Delta-G solvation = -3494.031347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.80949 -39.04318 -37.07471 -34.82411 -33.65084 -32.33695 -31.06751 -30.02697 -28.58016 -27.22453 -26.85141 -26.59749 -25.37796 -23.70848 -22.59659 -22.35160 -19.83625 -19.05784 -17.54314 -16.86991 -16.52668 -16.33999 -15.42431 -15.09901 -14.94565 -14.76829 -14.27155 -13.89991 -13.78448 -13.61211 -13.56343 -13.39971 -12.99517 -12.57428 -12.45799 -12.30793 -12.25137 -11.99468 -11.90326 -11.50084 -11.34805 -11.27447 -11.21237 -11.15801 -11.11430 -10.89437 -10.79579 -10.53515 -10.39776 -10.16821 -10.04672 -9.50383 -9.19206 -9.07873 -8.72327 -8.46278 -8.38909 -7.50734 -6.00725 -4.04739 1.03177 1.28704 1.80643 3.31317 3.38989 3.43263 3.64223 3.99585 4.06705 4.47679 4.67446 4.82003 4.83027 4.99538 5.03110 5.08354 5.16792 5.25877 5.32850 5.36567 5.43038 5.51161 5.70398 5.73882 5.75308 5.80866 5.90474 5.91680 5.97089 6.01213 6.14007 6.14539 6.17867 6.23384 6.28449 6.32883 6.37099 6.41603 6.42694 6.45225 6.60891 6.69253 6.73909 6.78083 6.88551 7.19792 7.50072 7.63364 7.96624 8.29207 8.51773 8.95388 9.18329 9.60250 11.06887 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004006 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.598653 B = 6988.559636 C = 8250.482872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.029 4.029 3 C -0.191 4.191 4 C 0.536 3.464 5 O -0.540 6.540 6 N -0.587 5.587 7 C 0.243 3.757 8 C -0.523 4.523 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.121 3.879 17 C -0.087 4.087 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.046 4.046 22 C -0.104 4.104 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.107 4.107 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -17.428 -6.277 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.031 4.031 3 C -0.212 4.212 4 C 0.325 3.675 5 O -0.420 6.420 6 N -0.317 5.317 7 C 0.124 3.876 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.004 4.004 17 C -0.088 4.088 18 C -0.198 4.198 19 C -0.195 4.195 20 C -0.198 4.198 21 C -0.046 4.046 22 C -0.122 4.122 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.125 4.125 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.216 -17.205 -6.184 20.474 hybrid contribution 0.202 0.457 0.996 1.114 sum 9.418 -16.748 -5.188 19.902 Atomic orbital electron populations 1.20895 0.89969 1.00367 1.04714 1.20972 0.96198 0.90799 0.95134 1.23173 1.00147 0.92606 1.05277 1.18072 0.87122 0.83984 0.78314 1.90766 1.14640 1.87288 1.49322 1.48051 1.07545 1.07622 1.68469 1.19382 0.92787 0.78510 0.96901 1.21512 1.34802 1.06287 0.93610 0.92536 1.24914 0.95179 0.96464 0.97516 1.69938 1.36040 1.14558 1.32900 0.86487 0.77818 0.78283 0.85099 1.19859 1.21039 1.20938 1.21543 0.82687 1.02484 0.93672 1.20994 0.95174 0.96270 0.96402 1.21947 1.02273 0.96570 0.99009 1.21800 0.94845 1.01583 1.01229 1.22022 1.01409 0.96699 0.99711 1.19024 0.96867 0.94043 0.94637 1.21309 0.99418 0.93667 0.97823 1.21074 0.97437 0.96741 0.98516 1.21211 0.99345 0.99661 0.94043 1.21067 0.99721 0.94501 0.98520 1.21360 0.96439 0.96917 0.97828 0.93562 0.89383 0.90279 0.85749 0.94222 0.94087 0.92874 0.90099 0.91668 0.92491 0.93695 0.91304 0.92962 0.92821 0.92501 0.92198 0.93244 0.92826 0.85685 0.85990 0.86266 0.86028 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 8.32 36.00 0.30 -1.30 16 2 C -0.03 -0.43 5.48 -102.20 -0.56 -0.99 16 3 C -0.19 -3.09 6.49 -37.50 -0.24 -3.33 16 4 C 0.54 11.14 6.14 -12.96 -0.08 11.06 16 5 O -0.54 -13.17 12.82 5.19 0.07 -13.10 16 6 N -0.59 -12.28 1.98 -176.70 -0.35 -12.63 16 7 C 0.24 6.25 4.07 -5.19 -0.02 6.22 16 8 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 12 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.12 2.00 4.52 -4.04 -0.02 1.98 16 17 C -0.09 -1.22 0.84 -154.51 -0.13 -1.35 16 18 C -0.14 -2.19 7.22 37.16 0.27 -1.92 16 19 C -0.14 -1.54 8.47 37.16 0.31 -1.22 16 20 C -0.14 -1.87 6.89 37.16 0.26 -1.62 16 21 C -0.05 -0.57 5.23 -105.06 -0.55 -1.12 16 22 C -0.10 -1.20 9.78 -39.11 -0.38 -1.58 16 23 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 24 C -0.12 -1.13 10.04 -39.46 -0.40 -1.53 16 25 C -0.12 -1.13 10.03 -39.65 -0.40 -1.53 16 26 C -0.11 -1.19 9.73 -39.11 -0.38 -1.57 16 27 H 0.05 0.60 7.99 -51.93 -0.42 0.19 16 28 H 0.09 1.54 7.12 -51.93 -0.37 1.17 16 29 H 0.08 1.33 7.43 -51.93 -0.39 0.95 16 30 H 0.12 1.77 4.90 -52.49 -0.26 1.52 16 31 H 0.04 1.02 6.05 -51.93 -0.31 0.71 16 32 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 35 H 0.07 0.96 6.03 -51.93 -0.31 0.65 16 36 H 0.06 0.91 8.08 -51.92 -0.42 0.49 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.95 6.01 -51.93 -0.31 0.63 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 45 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.78 385.63 -9.60 -41.38 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.00 Total: 2.21 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.84 Total: -14.87 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.39 Total: -38.42 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.78 -9.60 -41.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729448584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.468 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds