Wall clock time and date at job start Tue Mar 31 2020 11:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34810 * 120.00075 * 2 1 4 4 C 1.46429 * 119.99999 * 5.53098 * 3 2 1 5 5 O 1.21694 * 119.99915 * 5.71821 * 4 3 2 6 6 N 1.34778 * 120.00056 * 185.72249 * 4 3 2 7 7 C 1.46496 * 119.99808 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46815 * 90.00292 * 7 6 4 9 9 H 1.08005 * 120.00248 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99745 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00456 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46971 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46639 * 119.99719 * 12 10 8 15 15 H 1.48494 * 109.47127 * 239.99544 * 12 10 8 16 16 C 1.46500 * 119.99666 * 359.97438 * 6 4 3 17 17 C 1.53001 * 109.47254 * 90.00417 * 16 6 4 18 18 C 1.52997 * 109.47272 * 59.99497 * 17 16 6 19 19 C 1.53000 * 109.47041 * 179.97438 * 17 16 6 20 20 C 1.53001 * 109.46834 * 299.99517 * 17 16 6 21 21 C 1.47211 * 120.00101 * 180.02562 * 2 1 3 22 22 C 1.39834 * 120.16447 * 294.99239 * 21 2 1 23 23 C 1.37899 * 119.82262 * 179.97438 * 22 21 2 24 24 C 1.38403 * 120.17166 * 0.02562 * 23 22 21 25 25 C 1.38404 * 120.34475 * 0.02562 * 24 23 22 26 26 C 1.37895 * 120.17090 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47461 * 174.84471 * 1 2 3 28 28 H 1.09002 * 109.46722 * 294.83918 * 1 2 3 29 29 H 1.08996 * 109.47877 * 54.83836 * 1 2 3 30 30 H 1.08002 * 120.00033 * 185.53174 * 3 2 1 31 31 H 1.09001 * 109.47234 * 209.99739 * 7 6 4 32 32 H 1.08997 * 109.47639 * 330.00331 * 7 6 4 33 33 H 0.97000 * 120.00383 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.46960 * 209.99800 * 16 6 4 35 35 H 1.08997 * 109.47611 * 329.99796 * 16 6 4 36 36 H 1.09008 * 109.47448 * 60.00035 * 18 17 16 37 37 H 1.08997 * 109.47132 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47432 * 300.00420 * 18 17 16 39 39 H 1.09001 * 109.47153 * 60.00442 * 19 17 16 40 40 H 1.09000 * 109.46523 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.47151 * 299.99971 * 19 17 16 42 42 H 1.08997 * 109.47192 * 60.00241 * 20 17 16 43 43 H 1.08997 * 109.47028 * 180.02562 * 20 17 16 44 44 H 1.08995 * 109.47402 * 300.00104 * 20 17 16 45 45 H 1.08001 * 120.09040 * 359.70703 * 22 21 2 46 46 H 1.08003 * 119.90886 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.82411 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.91396 * 179.97438 * 25 24 23 49 49 H 1.07993 * 120.08478 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 1.4540 2.4326 0.1222 5 8 0.2546 2.4278 0.3281 6 7 2.1132 3.6026 0.0067 7 6 1.3857 4.8683 0.1284 8 6 1.3762 5.3054 1.5706 9 1 1.8630 4.7007 2.3215 10 6 0.7451 6.4769 1.9316 11 7 0.1519 7.2131 1.0175 12 14 0.7327 7.0185 3.7194 13 1 1.4645 6.0231 4.5432 14 1 1.3944 8.3425 3.8401 15 1 -0.6700 7.1209 4.1959 16 6 3.5571 3.6083 -0.2407 17 6 3.8163 3.6072 -1.7486 18 6 3.1865 4.8528 -2.3752 19 6 5.3243 3.6139 -2.0068 20 6 3.1973 2.3543 -2.3715 21 6 2.2430 -1.2749 -0.0006 22 6 2.1520 -2.1393 1.0948 23 6 2.8441 -3.3320 1.0866 24 6 3.6277 -3.6740 -0.0018 25 6 3.7236 -2.8233 -1.0892 26 6 3.0376 -1.6271 -1.0960 27 1 -0.3634 -1.0235 -0.0923 28 1 -0.3633 0.4317 0.9326 29 1 -0.3635 0.5918 -0.8401 30 1 3.2573 1.1697 -0.0902 31 1 1.8762 5.6292 -0.4786 32 1 0.3608 4.7330 -0.2170 33 1 -0.2918 8.0375 1.2714 34 1 3.9982 4.5010 0.2031 35 1 4.0059 2.7210 0.2058 36 1 3.6275 5.7455 -1.9315 37 1 3.3708 4.8517 -3.4495 38 1 2.1121 4.8485 -2.1912 39 1 5.7734 2.7267 -1.5604 40 1 5.5089 3.6127 -3.0811 41 1 5.7650 4.5066 -1.5631 42 1 2.1230 2.3500 -2.1875 43 1 3.3823 2.3533 -3.4456 44 1 3.6460 1.4670 -1.9250 45 1 1.5447 -1.8715 1.9469 46 1 2.7745 -4.0008 1.9317 47 1 4.1676 -4.6094 -0.0021 48 1 4.3374 -3.0970 -1.9347 49 1 3.1138 -0.9641 -1.9451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729448584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:14 Heat of formation + Delta-G solvation = -21.556022 kcal Electronic energy + Delta-G solvation = -27126.664512 eV Core-core repulsion = 23631.954625 eV Total energy + Delta-G solvation = -3494.709886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24703 -39.98196 -38.46036 -36.16489 -35.31776 -34.29689 -31.82680 -31.11139 -30.13326 -28.67562 -28.08645 -27.79057 -26.89407 -25.23381 -23.85736 -23.27742 -21.18963 -20.26380 -18.90472 -18.58934 -18.21118 -17.38808 -16.97670 -16.51264 -16.23094 -15.87178 -15.69203 -15.21359 -14.91306 -14.84729 -14.75381 -14.41804 -14.25960 -14.23741 -13.83113 -13.61095 -13.49949 -13.24682 -13.17105 -12.97233 -12.88763 -12.70691 -12.54595 -12.49323 -12.38678 -12.12934 -12.06071 -11.96923 -11.94960 -11.66498 -11.53226 -11.36584 -10.62403 -10.41487 -10.27914 -9.82994 -9.51889 -9.22105 -8.20683 -6.35594 0.06381 0.53352 0.65490 1.34141 1.36432 1.48367 2.30182 2.48148 2.50731 2.88667 3.07540 3.55615 3.82711 3.91231 3.94942 4.09336 4.10416 4.16673 4.20154 4.32802 4.51908 4.56792 4.59715 4.61302 4.68275 4.77623 4.79410 4.82602 4.92546 4.93865 4.99507 5.05269 5.09197 5.10666 5.14505 5.18518 5.24567 5.25227 5.36563 5.37971 5.43506 5.47826 5.55988 5.62349 5.64413 5.65209 5.68257 5.92590 6.10767 6.11040 6.72759 6.87029 7.29904 7.55077 8.85266 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004006 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.598653 B = 6988.559636 C = 8250.482872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.003 4.003 3 C -0.202 4.202 4 C 0.528 3.472 5 O -0.592 6.592 6 N -0.591 5.591 7 C 0.265 3.735 8 C -0.542 4.542 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.964 3.036 13 H -0.269 1.269 14 H -0.268 1.268 15 H -0.281 1.281 16 C 0.115 3.885 17 C -0.081 4.081 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.070 4.070 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.034 0.966 32 H -0.009 1.009 33 H 0.266 0.734 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -20.242 -6.334 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.005 4.005 3 C -0.222 4.222 4 C 0.320 3.680 5 O -0.475 6.475 6 N -0.320 5.320 7 C 0.144 3.856 8 C -0.580 4.580 9 H 0.067 0.933 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.789 3.211 13 H -0.194 1.194 14 H -0.193 1.193 15 H -0.207 1.207 16 C -0.008 4.008 17 C -0.082 4.082 18 C -0.195 4.195 19 C -0.187 4.187 20 C -0.192 4.192 21 C -0.070 4.070 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.129 4.129 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.051 0.949 32 H 0.009 0.991 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.162 0.838 47 H 0.166 0.834 48 H 0.167 0.833 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.425 -20.029 -6.255 24.386 hybrid contribution -0.825 1.221 0.962 1.760 sum 11.601 -18.808 -5.293 22.723 Atomic orbital electron populations 1.20805 0.91179 1.01197 1.02557 1.21135 0.95640 0.91884 0.91819 1.22901 1.00798 0.90350 1.08182 1.18846 0.86824 0.85303 0.77039 1.90734 1.16972 1.88091 1.51742 1.47985 1.09301 1.06143 1.68528 1.18780 0.90746 0.80644 0.95446 1.21783 1.35101 1.06602 0.94557 0.93339 1.25810 0.94550 0.96456 1.02168 1.70056 1.36540 1.15003 1.35108 0.85416 0.77878 0.78380 0.79421 1.19355 1.19342 1.20739 1.21836 0.79798 1.03076 0.96043 1.20965 0.97538 0.95707 0.94039 1.21898 0.99633 0.97353 1.00635 1.21743 0.91795 1.02588 1.02569 1.21962 0.99245 0.96955 1.01028 1.18903 0.98544 0.93255 0.96340 1.21399 1.00131 0.94463 0.97539 1.21361 0.96837 0.96154 0.99651 1.21629 0.98325 1.00467 0.93205 1.21407 0.99228 0.93599 0.99488 1.21492 0.96144 0.97906 0.97381 0.90993 0.91891 0.92259 0.83221 0.94853 0.99071 0.92494 0.91345 0.89070 0.93511 0.91422 0.95365 0.90940 0.91167 0.92578 0.95562 0.91371 0.90770 0.86124 0.83822 0.83352 0.83324 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 8.32 71.23 0.59 -2.70 16 2 C 0.00 -0.08 5.48 -18.29 -0.10 -0.18 16 3 C -0.20 -6.57 6.49 23.62 0.15 -6.41 16 4 C 0.53 23.26 6.14 86.38 0.53 23.79 16 5 O -0.59 -31.32 12.82 -4.33 -0.06 -31.38 16 6 N -0.59 -26.15 1.98 -831.18 -1.65 -27.80 16 7 C 0.27 14.67 4.07 85.63 0.35 15.02 16 8 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 9 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 10 C 0.01 0.53 5.46 84.65 0.46 0.99 16 11 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 12 Si 0.96 46.16 29.54 68.60 2.03 48.18 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 16 C 0.12 3.85 4.52 86.38 0.39 4.24 16 17 C -0.08 -2.20 0.84 -52.18 -0.04 -2.25 16 18 C -0.14 -4.42 7.22 71.98 0.52 -3.90 16 19 C -0.13 -2.51 8.47 71.98 0.61 -1.90 16 20 C -0.13 -3.40 6.89 71.98 0.50 -2.90 16 21 C -0.07 -1.65 5.23 -20.15 -0.11 -1.76 16 22 C -0.12 -2.49 9.78 22.58 0.22 -2.27 16 23 C -0.12 -1.97 10.03 22.23 0.22 -1.75 16 24 C -0.12 -1.62 10.04 22.35 0.22 -1.40 16 25 C -0.12 -1.74 10.03 22.23 0.22 -1.52 16 26 C -0.11 -2.12 9.73 22.58 0.22 -1.90 16 27 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 28 H 0.06 2.38 7.12 -2.39 -0.02 2.36 16 29 H 0.06 2.16 7.43 -2.39 -0.02 2.14 16 30 H 0.15 4.00 4.90 -2.91 -0.01 3.99 16 31 H 0.03 1.86 6.05 -2.39 -0.01 1.85 16 32 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.09 2.55 6.03 -2.39 -0.01 2.53 16 36 H 0.05 1.55 8.08 -2.38 -0.02 1.53 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.03 1.11 5.99 -2.39 -0.01 1.09 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.03 0.83 6.01 -2.39 -0.01 0.82 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.55 6.34 -2.39 -0.02 1.53 16 45 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 46 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 47 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 48 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.79 385.63 6.73 -68.06 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.92 Total: 18.59 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.20 Total: -18.78 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.36 Total: -84.67 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.06 Total: -31.38 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.79 6.73 -68.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729448584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.502 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds