Wall clock time and date at job start Tue Mar 31 2020 11:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47124 * 2 1 4 4 H 1.09000 * 109.46529 * 54.99956 * 3 2 1 5 5 C 1.53002 * 109.46969 * 295.00220 * 3 2 1 6 6 C 1.50697 * 109.47131 * 175.00038 * 3 2 1 7 7 C 1.38356 * 119.85521 * 59.72969 * 6 3 2 8 8 C 1.37961 * 120.14489 * 179.72529 * 7 6 3 9 9 C 1.39577 * 119.85253 * 0.52231 * 8 7 6 10 10 C 1.47842 * 120.14432 * 179.77157 * 9 8 7 11 11 O 1.21554 * 119.99856 * 150.62410 * 10 9 8 12 12 N 1.34775 * 120.00050 * 330.62729 * 10 9 8 13 13 C 1.46492 * 120.00106 * 6.30211 * 12 10 9 14 14 C 1.50702 * 109.47301 * 98.66286 * 13 12 10 15 15 H 1.08006 * 119.99511 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00110 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47121 * 59.99944 * 18 16 14 20 20 H 1.48498 * 109.46964 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46966 * 299.99742 * 18 16 14 22 22 C 1.46499 * 119.99773 * 186.30526 * 12 10 9 23 23 C 1.53003 * 109.47203 * 94.54399 * 22 12 10 24 24 C 1.53005 * 117.49600 * 243.45493 * 23 22 12 25 25 C 1.53000 * 117.49924 * 174.83138 * 23 22 12 26 26 C 1.39586 * 119.71085 * 359.74915 * 9 8 7 27 27 C 1.37956 * 119.85138 * 0.02562 * 26 9 8 28 28 H 1.09002 * 109.47619 * 60.00259 * 1 2 3 29 29 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47608 * 299.99678 * 1 2 3 31 31 H 1.09000 * 109.47608 * 240.00322 * 2 1 3 32 32 H 1.09002 * 109.47619 * 119.99741 * 2 1 3 33 33 H 1.09003 * 109.46863 * 299.99907 * 5 3 2 34 34 H 1.09002 * 109.47065 * 59.99627 * 5 3 2 35 35 H 1.08998 * 109.46670 * 180.02562 * 5 3 2 36 36 H 1.07999 * 119.92632 * 359.97438 * 7 6 3 37 37 H 1.07997 * 120.07396 * 180.27384 * 8 7 6 38 38 H 1.09005 * 109.47253 * 218.66547 * 13 12 10 39 39 H 1.09002 * 109.47504 * 338.66454 * 13 12 10 40 40 H 0.97001 * 119.99714 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47137 * 214.54083 * 22 12 10 42 42 H 1.08997 * 109.47534 * 334.54002 * 22 12 10 43 43 H 1.08995 * 115.54954 * 29.16131 * 23 22 12 44 44 H 1.08999 * 117.49925 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.49784 * 145.01904 * 24 23 22 46 46 H 1.08993 * 117.49950 * 214.97509 * 25 23 22 47 47 H 1.09000 * 117.49713 * 0.02562 * 25 23 22 48 48 H 1.07995 * 120.07006 * 180.02562 * 26 9 8 49 49 H 1.08000 * 119.92582 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5418 1.4444 0.1238 7 6 4.3127 0.8105 -0.8344 8 6 5.6883 0.8133 -0.7300 9 6 6.3017 1.4481 0.3512 10 6 7.7752 1.4508 0.4721 11 8 8.3375 2.3729 1.0297 12 7 8.4948 0.4307 -0.0359 13 6 7.8334 -0.6098 -0.8270 14 6 8.0230 -0.3221 -2.2941 15 1 8.5808 0.5486 -2.6059 16 6 7.4843 -1.1703 -3.2382 17 7 6.8046 -2.2302 -2.8584 18 14 7.7200 -0.8140 -5.0567 19 1 9.1705 -0.7987 -5.3742 20 1 7.0494 -1.8687 -5.8587 21 1 7.1278 0.5081 -5.3829 22 6 9.9386 0.3625 0.2031 23 6 10.2125 -0.5194 1.4230 24 6 10.8612 0.1412 2.6410 25 6 11.6736 -0.8160 1.7665 26 6 5.5179 2.0809 1.3174 27 6 4.1435 2.0747 1.1986 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0697 1.5875 -2.1492 34 1 0.5488 2.1252 -1.3969 35 1 1.9988 3.1541 -1.3075 36 1 3.8366 0.3158 -1.6681 37 1 6.2891 0.3219 -1.4810 38 1 8.2688 -1.5800 -0.5877 39 1 6.7687 -0.6219 -0.5938 40 1 6.4260 -2.8271 -3.5227 41 1 10.4319 -0.0628 -0.6709 42 1 10.3244 1.3654 0.3859 43 1 9.4823 -1.3075 1.6068 44 1 11.0933 1.2041 2.5732 45 1 10.5578 -0.2121 3.6265 46 1 11.9046 -1.7991 2.1767 47 1 12.4397 -0.3825 1.1238 48 1 5.9864 2.5743 2.1561 49 1 3.5359 2.5643 1.9453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755326372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:45 Heat of formation + Delta-G solvation = 15.148421 kcal Electronic energy + Delta-G solvation = -26795.054243 eV Core-core repulsion = 23301.935981 eV Total energy + Delta-G solvation = -3493.118262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91334 -38.47391 -36.91301 -35.69945 -34.92044 -32.61638 -31.05595 -30.45286 -28.81630 -27.77964 -26.44007 -24.68001 -23.18528 -22.55411 -22.09776 -21.78278 -20.49182 -19.58501 -18.86440 -16.74153 -16.52542 -16.07829 -15.61786 -15.14952 -14.62807 -14.59883 -14.43928 -14.06945 -13.94552 -13.77045 -13.27813 -13.16493 -13.01619 -12.75598 -12.44603 -12.23142 -11.97034 -11.91968 -11.77816 -11.61618 -11.35918 -11.25453 -11.17348 -10.97303 -10.90202 -10.72665 -10.64557 -10.40616 -10.26797 -10.15087 -9.83265 -9.66574 -9.55371 -9.01606 -8.72797 -8.30281 -8.04924 -7.72125 -6.30318 -4.39824 1.50917 1.98071 3.18752 3.23887 3.26974 3.52291 3.84035 4.18104 4.23804 4.43868 4.78968 4.90506 5.00191 5.09708 5.11301 5.23207 5.29620 5.38598 5.44014 5.49803 5.50986 5.55771 5.59358 5.69106 5.81887 5.86109 5.90587 5.97983 6.01003 6.04838 6.08500 6.14767 6.15410 6.21325 6.28053 6.37233 6.38498 6.42730 6.49462 6.60668 6.66673 6.76786 6.92038 7.09075 7.16544 7.19062 7.49048 7.58892 7.65339 7.91872 8.33266 8.69658 9.00909 9.28511 10.73927 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.004872 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.535016 B = 5746.060270 C = 7794.761729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.051 4.051 4 H 0.073 0.927 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.129 4.129 8 C -0.092 4.092 9 C -0.138 4.138 10 C 0.559 3.441 11 O -0.571 6.571 12 N -0.586 5.586 13 C 0.206 3.794 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.881 5.881 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.149 3.851 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.179 4.179 26 C -0.068 4.068 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.121 0.879 37 H 0.203 0.797 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 2.842 5.878 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.069 4.069 4 H 0.091 0.909 5 C -0.203 4.203 6 C -0.064 4.064 7 C -0.147 4.147 8 C -0.109 4.109 9 C -0.141 4.141 10 C 0.348 3.652 11 O -0.453 6.453 12 N -0.315 5.315 13 C 0.087 3.913 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.518 5.518 18 Si 0.722 3.278 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.025 3.975 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.217 4.217 26 C -0.087 4.087 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.219 0.781 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.140 0.860 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.112 3.115 6.074 9.163 hybrid contribution 0.107 -0.079 -0.976 0.985 sum -6.005 3.036 5.098 8.442 Atomic orbital electron populations 1.21825 0.96063 1.01437 1.01610 1.21599 0.95330 0.95841 1.02785 1.20172 0.91390 0.96637 0.98732 0.90880 1.21899 1.00780 1.00605 0.96986 1.20013 0.94861 0.96835 0.94702 1.21000 0.93849 1.00678 0.99159 1.23489 0.95934 0.92917 0.98586 1.19949 0.93197 1.02978 0.97995 1.18333 0.86960 0.81917 0.77971 1.90645 1.72516 1.35878 1.46274 1.47990 1.07452 1.25380 1.50655 1.20356 0.95435 0.85993 0.89561 1.21421 1.35584 1.10653 0.90581 0.91741 1.24975 0.94556 0.94505 0.99478 1.69926 1.33919 1.13133 1.34784 0.86576 0.78791 0.78282 0.84118 1.19943 1.20972 1.19822 1.20855 0.81985 0.99042 0.95592 1.22782 0.95613 1.02233 0.97233 1.22980 1.04639 0.98630 0.95266 1.22893 0.94435 1.00433 1.03896 1.21079 0.93197 0.96528 0.97937 1.20778 0.94207 1.02683 0.98704 0.92548 0.92885 0.93020 0.91357 0.91835 0.92157 0.92479 0.92684 0.86109 0.78117 0.94935 0.91190 0.92143 0.89904 0.90500 0.87812 0.88774 0.89510 0.89157 0.88909 0.86012 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.15 0.36 -1.09 16 2 C -0.12 -1.39 5.14 -26.73 -0.14 -1.52 16 3 C -0.05 -0.62 2.56 -91.77 -0.23 -0.86 16 4 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 5 C -0.15 -1.67 8.76 37.16 0.33 -1.34 16 6 C -0.06 -0.99 4.79 -104.53 -0.50 -1.49 16 7 C -0.13 -2.30 8.74 -39.64 -0.35 -2.65 16 8 C -0.09 -1.91 7.50 -39.18 -0.29 -2.20 16 9 C -0.14 -2.85 5.60 -104.97 -0.59 -3.44 16 10 C 0.56 12.45 7.47 -12.33 -0.09 12.36 16 11 O -0.57 -13.57 16.19 5.32 0.09 -13.48 16 12 N -0.59 -12.68 2.47 -176.18 -0.43 -13.11 16 13 C 0.21 4.79 4.67 -5.20 -0.02 4.77 16 14 C -0.54 -13.52 7.53 -34.44 -0.26 -13.78 16 15 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 16 C 0.07 1.74 5.33 -17.82 -0.10 1.64 16 17 N -0.88 -22.72 13.29 55.43 0.74 -21.99 16 18 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.15 2.85 5.78 -4.04 -0.02 2.82 16 23 C -0.16 -2.67 6.01 -90.62 -0.54 -3.22 16 24 C -0.18 -2.63 10.18 -26.73 -0.27 -2.90 16 25 C -0.18 -2.45 10.25 -26.73 -0.27 -2.73 16 26 C -0.07 -1.23 9.60 -39.18 -0.38 -1.61 16 27 C -0.15 -2.27 9.65 -39.64 -0.38 -2.66 16 28 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.86 7.54 -51.93 -0.39 0.47 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.73 7.39 -51.93 -0.38 0.35 16 34 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.12 2.06 7.14 -52.49 -0.37 1.69 16 37 H 0.20 4.66 3.03 -52.49 -0.16 4.50 16 38 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.07 1.68 3.99 -52.26 -0.21 1.47 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 42 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 43 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.12 2.10 7.91 -52.49 -0.42 1.68 16 49 H 0.12 1.49 7.94 -52.49 -0.42 1.07 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -26.97 390.43 -10.50 -37.47 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.99 Total: 10.46 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.76 Total: -19.89 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.30 Total: -35.10 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -26.97 -10.50 -37.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755326372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.619 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds