Wall clock time and date at job start Tue Mar 31 2020 11:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47124 * 2 1 4 4 H 1.09000 * 109.46529 * 54.99956 * 3 2 1 5 5 C 1.53002 * 109.46969 * 295.00220 * 3 2 1 6 6 C 1.50697 * 109.47131 * 175.00038 * 3 2 1 7 7 C 1.38356 * 119.85521 * 59.72969 * 6 3 2 8 8 C 1.37961 * 120.14489 * 179.72529 * 7 6 3 9 9 C 1.39577 * 119.85253 * 0.52231 * 8 7 6 10 10 C 1.47842 * 120.14432 * 179.77157 * 9 8 7 11 11 O 1.21554 * 119.99856 * 150.62410 * 10 9 8 12 12 N 1.34775 * 120.00050 * 330.62729 * 10 9 8 13 13 C 1.46492 * 120.00106 * 6.30211 * 12 10 9 14 14 C 1.50702 * 109.47301 * 98.66286 * 13 12 10 15 15 H 1.08006 * 119.99511 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00110 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47121 * 59.99944 * 18 16 14 20 20 H 1.48498 * 109.46964 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46966 * 299.99742 * 18 16 14 22 22 C 1.46499 * 119.99773 * 186.30526 * 12 10 9 23 23 C 1.53003 * 109.47203 * 94.54399 * 22 12 10 24 24 C 1.53005 * 117.49600 * 243.45493 * 23 22 12 25 25 C 1.53000 * 117.49924 * 174.83138 * 23 22 12 26 26 C 1.39586 * 119.71085 * 359.74915 * 9 8 7 27 27 C 1.37956 * 119.85138 * 0.02562 * 26 9 8 28 28 H 1.09002 * 109.47619 * 60.00259 * 1 2 3 29 29 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47608 * 299.99678 * 1 2 3 31 31 H 1.09000 * 109.47608 * 240.00322 * 2 1 3 32 32 H 1.09002 * 109.47619 * 119.99741 * 2 1 3 33 33 H 1.09003 * 109.46863 * 299.99907 * 5 3 2 34 34 H 1.09002 * 109.47065 * 59.99627 * 5 3 2 35 35 H 1.08998 * 109.46670 * 180.02562 * 5 3 2 36 36 H 1.07999 * 119.92632 * 359.97438 * 7 6 3 37 37 H 1.07997 * 120.07396 * 180.27384 * 8 7 6 38 38 H 1.09005 * 109.47253 * 218.66547 * 13 12 10 39 39 H 1.09002 * 109.47504 * 338.66454 * 13 12 10 40 40 H 0.97001 * 119.99714 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47137 * 214.54083 * 22 12 10 42 42 H 1.08997 * 109.47534 * 334.54002 * 22 12 10 43 43 H 1.08995 * 115.54954 * 29.16131 * 23 22 12 44 44 H 1.08999 * 117.49925 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.49784 * 145.01904 * 24 23 22 46 46 H 1.08993 * 117.49950 * 214.97509 * 25 23 22 47 47 H 1.09000 * 117.49713 * 0.02562 * 25 23 22 48 48 H 1.07995 * 120.07006 * 180.02562 * 26 9 8 49 49 H 1.08000 * 119.92582 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5418 1.4444 0.1238 7 6 4.3127 0.8105 -0.8344 8 6 5.6883 0.8133 -0.7300 9 6 6.3017 1.4481 0.3512 10 6 7.7752 1.4508 0.4721 11 8 8.3375 2.3729 1.0297 12 7 8.4948 0.4307 -0.0359 13 6 7.8334 -0.6098 -0.8270 14 6 8.0230 -0.3221 -2.2941 15 1 8.5808 0.5486 -2.6059 16 6 7.4843 -1.1703 -3.2382 17 7 6.8046 -2.2302 -2.8584 18 14 7.7200 -0.8140 -5.0567 19 1 9.1705 -0.7987 -5.3742 20 1 7.0494 -1.8687 -5.8587 21 1 7.1278 0.5081 -5.3829 22 6 9.9386 0.3625 0.2031 23 6 10.2125 -0.5194 1.4230 24 6 10.8612 0.1412 2.6410 25 6 11.6736 -0.8160 1.7665 26 6 5.5179 2.0809 1.3174 27 6 4.1435 2.0747 1.1986 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0697 1.5875 -2.1492 34 1 0.5488 2.1252 -1.3969 35 1 1.9988 3.1541 -1.3075 36 1 3.8366 0.3158 -1.6681 37 1 6.2891 0.3219 -1.4810 38 1 8.2688 -1.5800 -0.5877 39 1 6.7687 -0.6219 -0.5938 40 1 6.4260 -2.8271 -3.5227 41 1 10.4319 -0.0628 -0.6709 42 1 10.3244 1.3654 0.3859 43 1 9.4823 -1.3075 1.6068 44 1 11.0933 1.2041 2.5732 45 1 10.5578 -0.2121 3.6265 46 1 11.9046 -1.7991 2.1767 47 1 12.4397 -0.3825 1.1238 48 1 5.9864 2.5743 2.1561 49 1 3.5359 2.5643 1.9453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755326372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:44 Heat of formation + Delta-G solvation = 5.078364 kcal Electronic energy + Delta-G solvation = -26795.490914 eV Core-core repulsion = 23301.935981 eV Total energy + Delta-G solvation = -3493.554933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49142 -39.87699 -38.26122 -37.06253 -36.47010 -34.50611 -32.31259 -31.83592 -29.95114 -29.53677 -27.95739 -25.80452 -24.99198 -23.84269 -23.31180 -23.13930 -21.83627 -20.76369 -20.41840 -18.63839 -18.15059 -17.70215 -16.95207 -16.43436 -16.37043 -16.02052 -15.77976 -15.41669 -15.29803 -14.91669 -14.74492 -14.55687 -14.38932 -14.27422 -13.83090 -13.58656 -13.44988 -13.12864 -13.03972 -12.85522 -12.78940 -12.59341 -12.58026 -12.37066 -12.36105 -12.10781 -11.81790 -11.79065 -11.62311 -11.42097 -11.35468 -11.20694 -10.87905 -10.76159 -10.56836 -9.76766 -9.57345 -9.41671 -8.24461 -6.40297 0.04124 0.55157 1.41240 1.42529 1.49811 1.88470 2.21907 2.40726 2.91410 2.93161 3.04708 3.65788 3.80134 3.81516 3.90487 3.99281 4.11644 4.16916 4.19633 4.24872 4.37441 4.52572 4.55118 4.58563 4.66472 4.68770 4.74061 4.77143 4.79702 4.80705 4.90159 4.98077 5.06027 5.08839 5.17395 5.20108 5.21049 5.23038 5.24130 5.25760 5.26647 5.42396 5.52661 5.58283 5.61324 5.63483 5.78280 5.80864 5.98003 6.12016 6.51683 6.75589 7.22536 7.34300 8.79382 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.004872 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.535016 B = 5746.060270 C = 7794.761729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.047 4.047 4 H 0.097 0.903 5 C -0.145 4.145 6 C -0.051 4.051 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.165 4.165 10 C 0.552 3.448 11 O -0.593 6.593 12 N -0.589 5.589 13 C 0.222 3.778 14 C -0.551 4.551 15 H 0.051 0.949 16 C 0.035 3.965 17 N -0.904 5.904 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.272 1.272 22 C 0.148 3.852 23 C -0.186 4.186 24 C -0.172 4.172 25 C -0.153 4.153 26 C -0.072 4.072 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.122 0.878 37 H 0.175 0.825 38 H 0.012 0.988 39 H 0.067 0.933 40 H 0.272 0.728 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.128 0.872 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 3.440 6.586 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.066 4.066 4 H 0.116 0.884 5 C -0.202 4.202 6 C -0.051 4.051 7 C -0.153 4.153 8 C -0.131 4.131 9 C -0.168 4.168 10 C 0.342 3.658 11 O -0.478 6.478 12 N -0.317 5.317 13 C 0.102 3.898 14 C -0.589 4.589 15 H 0.069 0.931 16 C -0.168 4.168 17 N -0.542 5.542 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.198 1.198 22 C 0.025 3.975 23 C -0.205 4.205 24 C -0.209 4.209 25 C -0.190 4.190 26 C -0.091 4.091 27 C -0.151 4.151 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.191 0.809 38 H 0.030 0.970 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.146 0.854 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.740 3.704 6.782 10.937 hybrid contribution 0.563 -0.246 -1.162 1.314 sum -7.177 3.459 5.620 9.750 Atomic orbital electron populations 1.21790 0.93978 1.02072 1.02622 1.21583 0.97131 0.95172 1.01698 1.20267 0.88695 0.97407 1.00203 0.88434 1.21900 1.02286 1.00116 0.95879 1.20399 0.96808 0.94623 0.93303 1.21060 0.92908 1.01170 1.00138 1.23174 0.97071 0.94286 0.98553 1.19960 0.92397 1.05038 0.99381 1.18703 0.87938 0.81560 0.77561 1.90604 1.73175 1.36489 1.47490 1.48036 1.08442 1.24886 1.50301 1.20061 0.95193 0.85355 0.89165 1.21459 1.35594 1.10302 0.91549 0.93087 1.25561 0.94158 0.94259 1.02810 1.70000 1.34485 1.13759 1.35920 0.85721 0.78648 0.78158 0.79945 1.19795 1.20150 1.19761 1.20924 0.80640 0.99238 0.96660 1.22591 0.97862 1.02552 0.97528 1.23023 1.04012 0.98695 0.95122 1.23020 0.92293 1.01165 1.02530 1.21265 0.94298 0.96106 0.97424 1.21200 0.93382 1.01466 0.99090 0.91779 0.92563 0.91704 0.92938 0.92587 0.93499 0.90104 0.92759 0.85977 0.80892 0.97018 0.91573 0.91919 0.90576 0.91061 0.89246 0.89231 0.88114 0.87112 0.87754 0.85369 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 71.98 0.70 -1.67 16 2 C -0.12 -2.53 5.14 30.59 0.16 -2.37 16 3 C -0.05 -1.02 2.56 -11.54 -0.03 -1.05 16 4 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 5 C -0.14 -2.93 8.76 71.98 0.63 -2.30 16 6 C -0.05 -1.49 4.79 -19.81 -0.09 -1.59 16 7 C -0.13 -4.87 8.74 22.23 0.19 -4.67 16 8 C -0.11 -4.88 7.50 22.53 0.17 -4.71 16 9 C -0.16 -7.02 5.60 -20.09 -0.11 -7.14 16 10 C 0.55 25.68 7.47 86.79 0.65 26.33 16 11 O -0.59 -29.14 16.19 -3.89 -0.06 -29.20 16 12 N -0.59 -26.88 2.47 -829.58 -2.05 -28.93 16 13 C 0.22 10.96 4.67 85.64 0.40 11.36 16 14 C -0.55 -28.61 7.53 25.60 0.19 -28.42 16 15 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 16 C 0.03 1.78 5.33 84.65 0.45 2.23 16 17 N -0.90 -47.85 13.29 21.45 0.28 -47.56 16 18 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.15 5.94 5.78 86.38 0.50 6.44 16 23 C -0.19 -6.37 6.01 -10.79 -0.06 -6.44 16 24 C -0.17 -4.95 10.18 30.60 0.31 -4.64 16 25 C -0.15 -3.99 10.25 30.60 0.31 -3.68 16 26 C -0.07 -2.56 9.60 22.53 0.22 -2.34 16 27 C -0.13 -3.85 9.65 22.23 0.21 -3.64 16 28 H 0.06 0.93 6.57 -2.39 -0.02 0.92 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.28 7.54 -2.39 -0.02 1.26 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 34 H 0.08 1.27 6.56 -2.39 -0.02 1.25 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 4.28 7.14 -2.91 -0.02 4.26 16 37 H 0.17 8.49 3.03 -2.91 -0.01 8.48 16 38 H 0.01 0.62 8.13 -2.38 -0.02 0.60 16 39 H 0.07 3.37 3.99 -2.70 -0.01 3.36 16 40 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 41 H 0.08 3.06 8.11 -2.38 -0.02 3.04 16 42 H 0.07 2.89 6.95 -2.39 -0.02 2.87 16 43 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 45 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.13 4.33 7.91 -2.91 -0.02 4.31 16 49 H 0.16 3.28 7.94 -2.91 -0.02 3.26 16 Total: -1.00 -60.17 390.43 5.92 -54.25 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.93 Total: 36.77 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.79 Total: -28.28 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -1.76 Total: -76.49 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.06 Total: -29.20 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -60.17 5.92 -54.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755326372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.325 kcal (2) G-P(sol) polarization free energy of solvation -60.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds