Wall clock time and date at job start Tue Mar 31 2020 11:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 N 1.46501 * 109.47296 * 120.00310 * 2 1 3 5 5 C 1.46507 * 119.99673 * 299.99969 * 4 2 1 6 6 C 1.52991 * 109.47266 * 269.99674 * 5 4 2 7 7 C 1.53781 * 113.61710 * 274.14062 * 6 5 4 8 8 C 1.53958 * 87.01775 * 220.04486 * 7 6 5 9 9 C 1.53782 * 87.11179 * 25.36466 * 8 7 6 10 10 C 1.34773 * 120.00061 * 119.99560 * 4 2 1 11 11 O 1.21282 * 119.99503 * 179.97438 * 10 4 2 12 12 C 1.50694 * 120.00092 * 0.02562 * 10 4 2 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 4 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08999 * 109.47561 * 299.99871 * 1 2 3 28 28 H 1.09002 * 109.46909 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47561 * 240.00129 * 2 1 3 31 31 H 1.09005 * 109.47083 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47650 * 300.00192 * 3 2 1 33 33 H 1.09003 * 109.47063 * 60.00572 * 3 2 1 34 34 H 1.09005 * 109.47035 * 30.00183 * 5 4 2 35 35 H 1.08998 * 109.46561 * 149.99684 * 5 4 2 36 36 H 1.09007 * 112.84724 * 45.33269 * 6 5 4 37 37 H 1.09002 * 113.61102 * 334.56310 * 7 6 5 38 38 H 1.09002 * 113.61527 * 105.46901 * 7 6 5 39 39 H 1.08996 * 113.53729 * 270.80839 * 8 7 6 40 40 H 1.09000 * 113.66147 * 139.92952 * 8 7 6 41 41 H 1.08999 * 113.61215 * 220.09303 * 9 8 7 42 42 H 1.08994 * 113.69688 * 89.19371 * 9 8 7 43 43 H 1.09001 * 109.46892 * 59.99768 * 12 10 4 44 44 H 1.08991 * 109.47294 * 299.99778 * 12 10 4 45 45 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 46 46 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 47 47 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 48 48 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 49 49 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6644 -0.1901 2.5268 6 6 2.7189 0.8168 2.9900 7 6 3.9313 0.1669 3.6775 8 6 3.8921 1.3387 4.6753 9 6 2.3957 1.4679 4.3452 10 6 2.7931 -1.7865 1.0724 11 8 3.1978 -2.3579 2.0627 12 6 3.1576 -2.3010 -0.2963 13 6 4.0244 -3.5261 -0.1581 14 6 5.3955 -3.4096 -0.1914 15 6 6.1949 -4.5355 -0.0712 16 6 5.6251 -5.7892 0.0907 17 6 4.2569 -5.9286 0.1331 18 6 3.4353 -4.7923 0.0120 19 6 2.0280 -4.9233 0.0549 20 1 1.4177 -4.0902 0.3709 21 6 1.4262 -6.1322 -0.3118 22 7 2.0387 -6.9448 -1.1342 23 14 -0.2516 -6.5859 0.3727 24 1 -0.6656 -7.9063 -0.1664 25 1 -0.1792 -6.6561 1.8542 26 1 -1.2440 -5.5557 -0.0262 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.6903 0.2973 2.4844 35 1 1.6238 -1.0227 3.2291 36 1 2.9891 1.5337 2.2145 37 1 3.7102 -0.7997 4.1302 38 1 4.8277 0.1500 3.0575 39 1 4.4843 2.1980 4.3610 40 1 4.0878 1.0425 5.7059 41 1 2.0541 2.4997 4.2634 42 1 1.7528 0.8583 4.9801 43 1 3.7028 -1.5301 -0.8409 44 1 2.2495 -2.5577 -0.8416 45 1 5.8500 -2.4379 -0.3165 46 1 7.2697 -4.4355 -0.1034 47 1 6.2576 -6.6597 0.1838 48 1 3.8152 -6.9059 0.2596 49 1 2.8691 -6.6733 -1.5555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767128388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:10 Heat of formation + Delta-G solvation = -28.580058 kcal Electronic energy + Delta-G solvation = -27542.790719 eV Core-core repulsion = 24047.776247 eV Total energy + Delta-G solvation = -3495.014471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34783 -39.82635 -38.99246 -37.37647 -35.74337 -33.59253 -32.60296 -31.11509 -30.08652 -28.18724 -27.87293 -26.74750 -26.42810 -23.98778 -22.87992 -22.82584 -21.84404 -20.32111 -19.89512 -19.33838 -18.14889 -17.08695 -16.80076 -16.63950 -16.27568 -16.02177 -15.83896 -15.48811 -15.08696 -14.95769 -14.77856 -14.21732 -13.99813 -13.90703 -13.85044 -13.60593 -13.35182 -13.28159 -13.00426 -12.98139 -12.79232 -12.66431 -12.53427 -12.40115 -12.22196 -12.13472 -11.99831 -11.80609 -11.55635 -11.45944 -11.22465 -11.19746 -11.04367 -10.84540 -10.60278 -9.49339 -9.44866 -9.42482 -9.05704 -6.39504 0.91127 0.98051 1.45084 1.60585 1.74754 1.85540 2.15660 2.30041 2.70728 3.51196 3.66891 3.79566 3.82300 3.91935 3.96901 4.02795 4.20754 4.21871 4.28501 4.37739 4.46762 4.47747 4.52838 4.57920 4.67516 4.70667 4.80091 4.81505 4.84054 4.90752 4.92261 4.97720 5.03227 5.06665 5.07155 5.10342 5.12066 5.30518 5.32495 5.36789 5.41131 5.49329 5.62904 5.78086 5.82404 5.83803 5.98314 6.04699 6.29358 6.44670 6.55514 6.86732 7.01617 7.44091 8.08128 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.004759 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.777834 B = 5881.790034 C = 6802.324310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 C -0.155 4.155 4 N -0.608 5.608 5 C 0.124 3.876 6 C -0.122 4.122 7 C -0.139 4.139 8 C -0.135 4.135 9 C -0.120 4.120 10 C 0.517 3.483 11 O -0.567 6.567 12 C -0.065 4.065 13 C -0.187 4.187 14 C -0.081 4.081 15 C -0.250 4.250 16 C -0.097 4.097 17 C -0.244 4.244 18 C 0.087 3.913 19 C -0.538 4.538 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.819 5.819 23 Si 1.106 2.894 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.253 1.253 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.083 0.917 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 19.546 2.889 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 C -0.213 4.213 4 N -0.341 5.341 5 C 0.002 3.998 6 C -0.141 4.141 7 C -0.177 4.177 8 C -0.173 4.173 9 C -0.158 4.158 10 C 0.306 3.694 11 O -0.445 6.445 12 C -0.104 4.104 13 C -0.189 4.189 14 C -0.099 4.099 15 C -0.269 4.269 16 C -0.115 4.115 17 C -0.264 4.264 18 C 0.085 3.915 19 C -0.567 4.567 20 H 0.083 0.917 21 C -0.210 4.210 22 N -0.443 5.443 23 Si 0.924 3.076 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.177 1.177 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.127 0.873 48 H 0.101 0.899 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.181 18.013 3.373 19.044 hybrid contribution 1.641 0.337 -0.011 1.675 sum -3.540 18.350 3.361 18.988 Atomic orbital electron populations 1.22145 0.93876 1.01878 1.03829 1.21446 0.95412 0.94476 0.87096 1.22208 1.01057 0.94189 1.03829 1.48148 1.50725 1.27612 1.07616 1.21448 0.98578 0.96397 0.83361 1.23113 0.95600 0.97683 0.97745 1.22869 0.98206 0.97765 0.98815 1.22853 0.97528 0.97965 0.98927 1.22811 0.96219 1.01549 0.95243 1.20980 0.77455 0.79421 0.91571 1.90642 1.54441 1.58374 1.41067 1.20243 1.00336 0.95619 0.94245 1.19526 0.93393 0.93986 1.11994 1.20756 0.93082 0.97634 0.98450 1.20684 0.98707 0.92597 1.14884 1.20883 0.94293 0.97303 0.99045 1.21135 0.94041 0.97991 1.13208 1.17752 0.93712 0.91625 0.88446 1.20495 0.92326 1.01155 1.42712 0.91711 1.28186 1.08141 0.92034 0.92670 1.70552 1.17334 1.37999 1.18380 0.83156 0.70268 0.77779 0.76436 1.19234 1.20211 1.17672 0.91216 0.89139 0.94175 0.89340 0.93075 0.89392 0.91042 0.88311 0.93332 0.87632 0.92808 0.94214 0.89113 0.91513 0.89179 0.90264 0.87950 0.89345 0.86771 0.86436 0.87281 0.89874 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.17 71.98 0.66 -2.28 16 2 C 0.12 2.55 3.17 44.99 0.14 2.69 16 3 C -0.16 -2.39 8.01 71.98 0.58 -1.81 16 4 N -0.61 -17.87 2.40 -797.84 -1.91 -19.79 16 5 C 0.12 3.26 4.65 86.37 0.40 3.66 16 6 C -0.12 -2.75 3.49 -10.27 -0.04 -2.78 16 7 C -0.14 -3.92 7.02 31.18 0.22 -3.70 16 8 C -0.14 -2.72 8.09 31.18 0.25 -2.47 16 9 C -0.12 -2.12 7.65 31.12 0.24 -1.88 16 10 C 0.52 20.67 7.31 87.66 0.64 21.31 16 11 O -0.57 -28.09 14.70 -3.04 -0.04 -28.14 16 12 C -0.06 -2.60 3.49 29.10 0.10 -2.50 16 13 C -0.19 -9.24 4.43 -19.40 -0.09 -9.32 16 14 C -0.08 -3.73 9.66 22.22 0.21 -3.51 16 15 C -0.25 -11.48 10.05 22.46 0.23 -11.25 16 16 C -0.10 -4.80 10.02 22.22 0.22 -4.57 16 17 C -0.24 -13.62 7.95 22.73 0.18 -13.44 16 18 C 0.09 4.86 5.30 -21.29 -0.11 4.75 16 19 C -0.54 -29.82 8.08 23.46 0.19 -29.63 16 20 H 0.06 3.56 6.73 -2.91 -0.02 3.54 16 21 C 0.01 0.31 4.94 85.25 0.42 0.73 16 22 N -0.82 -45.61 12.31 21.82 0.27 -45.34 16 23 Si 1.11 45.62 30.00 68.60 2.06 47.68 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 27 H 0.07 1.11 6.66 -2.39 -0.02 1.10 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 2.02 5.77 -2.39 -0.01 2.01 16 31 H 0.05 0.89 7.98 -2.38 -0.02 0.87 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.97 6.48 -2.39 -0.02 0.96 16 34 H 0.10 1.98 6.43 -2.38 -0.02 1.97 16 35 H 0.05 1.61 7.15 -2.39 -0.02 1.59 16 36 H 0.11 2.11 5.65 -2.38 -0.01 2.10 16 37 H 0.05 1.88 7.64 -2.39 -0.02 1.86 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.10 3.38 7.70 -2.39 -0.02 3.36 16 44 H 0.09 3.61 6.70 -2.39 -0.02 3.59 16 45 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 46 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 47 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 48 H 0.08 4.86 6.49 -2.91 -0.02 4.84 16 49 H 0.28 16.42 6.68 -92.71 -0.62 15.80 16 Total: -1.00 -69.74 380.55 5.89 -63.84 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 1.07 Total: 37.75 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 4.45 Total: -56.01 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -1.65 Total: -65.13 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.14 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.06 Total: 47.68 kcal Total: -69.74 5.89 -63.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767128388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.263 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds