Wall clock time and date at job start Tue Mar 31 2020 11:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.09006 * 109.46772 * 55.00702 * 3 2 1 5 5 C 1.52994 * 109.47575 * 295.00071 * 3 2 1 6 6 C 1.52999 * 109.47465 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46869 * 60.00364 * 6 5 3 8 8 C 1.53003 * 109.46880 * 300.00087 * 7 6 5 9 9 C 1.52996 * 109.47205 * 59.99777 * 8 7 6 10 10 H 1.09004 * 109.47027 * 60.00160 * 9 8 7 11 11 N 1.46504 * 109.47002 * 179.97438 * 9 8 7 12 12 C 1.34776 * 120.00535 * 275.27743 * 11 9 8 13 13 O 1.21282 * 119.99357 * 359.72892 * 12 11 9 14 14 C 1.50698 * 120.00329 * 179.72432 * 12 11 9 15 15 C 1.50699 * 109.47329 * 180.02562 * 14 12 11 16 16 C 1.37640 * 120.12431 * 264.72615 * 15 14 12 17 17 C 1.38613 * 120.24386 * 179.72170 * 16 15 14 18 18 C 1.38656 * 120.50351 * 0.55377 * 17 16 15 19 19 C 1.37604 * 120.24600 * 359.72550 * 18 17 16 20 20 C 1.40691 * 120.12909 * 85.00073 * 15 14 12 21 21 C 1.41396 * 120.24127 * 359.97438 * 20 15 14 22 22 H 1.07997 * 120.00516 * 329.78942 * 21 20 15 23 23 C 1.39945 * 119.99953 * 149.79473 * 21 20 15 24 24 N 1.30828 * 120.00254 * 162.08336 * 23 21 20 25 25 Si 1.86803 * 119.99913 * 342.08650 * 23 21 20 26 26 H 1.48498 * 109.47411 * 95.38914 * 25 23 21 27 27 H 1.48503 * 109.47121 * 215.38932 * 25 23 21 28 28 H 1.48498 * 109.47064 * 335.38887 * 25 23 21 29 29 H 1.09004 * 109.47469 * 59.99672 * 1 2 3 30 30 H 1.09006 * 109.47222 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47044 * 299.99720 * 1 2 3 32 32 H 1.09004 * 109.47251 * 240.00321 * 2 1 3 33 33 H 1.08995 * 109.47054 * 120.00756 * 2 1 3 34 34 H 1.09006 * 109.47018 * 60.00195 * 5 3 2 35 35 H 1.08995 * 109.47104 * 300.00218 * 5 3 2 36 36 H 1.08995 * 109.47447 * 300.00387 * 6 5 3 37 37 H 1.08998 * 109.47563 * 180.02562 * 6 5 3 38 38 H 1.08995 * 109.47112 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47068 * 59.99790 * 7 6 5 40 40 H 1.09004 * 109.46998 * 299.99918 * 8 7 6 41 41 H 1.08994 * 109.46948 * 180.02562 * 8 7 6 42 42 H 0.97011 * 119.99658 * 95.00589 * 11 9 8 43 43 H 1.09003 * 109.46778 * 300.00577 * 14 12 11 44 44 H 1.09006 * 109.46951 * 59.99684 * 14 12 11 45 45 H 1.07999 * 119.87869 * 359.97438 * 16 15 14 46 46 H 1.08002 * 119.74850 * 180.30352 * 17 16 15 47 47 H 1.07997 * 119.87896 * 179.74863 * 18 17 16 48 48 H 1.08001 * 120.12694 * 180.02562 * 19 18 17 49 49 H 0.97002 * 120.00064 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3072 6 6 2.1447 3.5693 -1.3069 7 6 3.6696 3.5716 -1.1810 8 6 4.0743 2.8874 0.1263 9 6 3.5648 1.4448 0.1260 10 1 3.9997 0.9060 -0.7159 11 7 3.9529 0.7896 1.3775 12 6 5.1724 0.2278 1.4942 13 8 5.9468 0.2605 0.5613 14 6 5.5739 -0.4407 2.7837 15 6 6.9740 -0.9829 2.6538 16 6 7.1756 -2.2974 2.2992 17 6 8.4624 -2.7972 2.1734 18 6 9.5597 -1.9843 2.4138 19 6 9.3817 -0.6685 2.7750 20 6 8.0799 -0.1488 2.9002 21 6 7.8848 1.2018 3.2703 22 1 7.0165 1.7384 2.9175 23 6 8.8170 1.8434 4.0936 24 7 8.8444 3.1499 4.1565 25 14 10.0224 0.8343 5.1027 26 1 11.3041 0.7094 4.3632 27 1 10.2652 1.5086 6.4034 28 1 9.4563 -0.5172 5.3438 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5489 2.1254 -1.3968 35 1 2.0698 1.5876 -2.1491 36 1 1.7099 4.1080 -0.4652 37 1 1.8560 4.0568 -2.2381 38 1 4.0325 4.5993 -1.1803 39 1 4.1045 3.0328 -2.0228 40 1 3.6394 3.4262 0.9682 41 1 5.1606 2.8895 0.2162 42 1 3.3335 0.7635 2.1237 43 1 5.5398 0.2859 3.5956 44 1 4.8857 -1.2583 2.9987 45 1 6.3281 -2.9408 2.1143 46 1 8.6113 -3.8286 1.8900 47 1 10.5577 -2.3853 2.3167 48 1 10.2378 -0.0370 2.9614 49 1 9.4908 3.5946 4.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776813708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:49 Heat of formation + Delta-G solvation = -57.232252 kcal Electronic energy + Delta-G solvation = -26953.013383 eV Core-core repulsion = 23456.756459 eV Total energy + Delta-G solvation = -3496.256924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.91273 -38.43408 -37.27680 -34.06004 -33.64628 -33.52994 -31.82250 -30.27216 -29.60648 -28.82170 -26.67539 -24.78076 -23.97854 -22.40300 -21.31999 -20.73245 -20.27100 -20.05318 -19.13546 -17.29579 -16.53704 -16.08665 -15.58094 -14.95413 -14.83660 -14.63212 -14.29110 -14.00914 -13.99172 -13.69114 -13.36112 -13.26249 -13.15508 -12.72864 -12.63582 -12.51337 -12.07062 -11.83220 -11.75404 -11.53812 -11.37217 -11.30458 -11.16245 -10.98752 -10.82442 -10.75613 -10.67854 -10.51878 -10.33478 -10.19881 -10.02820 -9.65624 -9.50720 -9.08850 -9.05306 -8.54459 -7.53755 -7.43788 -6.88186 -4.41719 2.62403 2.77401 3.16239 3.24114 3.36130 3.42229 3.71750 4.03450 4.52897 4.57382 4.63914 4.78943 4.99052 5.12026 5.19612 5.29240 5.36552 5.41923 5.44575 5.53575 5.54928 5.64148 5.68357 5.72565 5.87585 5.92103 5.93760 5.95813 6.01801 6.06940 6.12527 6.14473 6.19646 6.21082 6.24695 6.27982 6.35045 6.47931 6.53926 6.65113 6.78114 6.97444 7.01306 7.26617 7.49298 7.72295 7.80590 7.96540 8.05935 8.20810 8.42375 8.74827 8.88541 8.96173 10.14058 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003818 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.094703 B = 7332.438857 C = 8345.895328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.073 0.927 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.154 3.846 10 H 0.083 0.917 11 N -0.739 5.739 12 C 0.517 3.483 13 O -0.522 6.522 14 C -0.075 4.075 15 C -0.164 4.164 16 C -0.070 4.070 17 C -0.242 4.242 18 C -0.081 4.081 19 C -0.234 4.234 20 C 0.110 3.890 21 C -0.444 4.444 22 H 0.089 0.911 23 C 0.085 3.915 24 N -0.811 5.811 25 Si 0.909 3.091 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.244 1.244 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.394 0.606 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -1.374 -5.060 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.049 3.951 10 H 0.101 0.899 11 N -0.392 5.392 12 C 0.305 3.695 13 O -0.395 6.395 14 C -0.115 4.115 15 C -0.165 4.165 16 C -0.089 4.089 17 C -0.261 4.261 18 C -0.099 4.099 19 C -0.253 4.253 20 C 0.107 3.893 21 C -0.472 4.472 22 H 0.107 0.893 23 C -0.133 4.133 24 N -0.435 5.435 25 Si 0.736 3.264 26 H -0.198 1.198 27 H -0.220 1.220 28 H -0.167 1.167 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.227 0.773 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.538 -1.088 -5.661 15.639 hybrid contribution 0.402 -0.156 0.787 0.898 sum -14.136 -1.244 -4.874 15.004 Atomic orbital electron populations 1.21820 0.96035 1.01389 1.01695 1.21565 0.95471 0.96186 1.02563 1.21441 0.94681 0.96295 0.98730 0.90860 1.21583 1.00530 0.95717 0.97065 1.21567 0.96136 0.96551 1.01509 1.21491 0.95349 1.00606 0.98011 1.21935 1.02352 0.95313 0.97406 1.20837 0.93174 0.93027 0.88021 0.89934 1.46166 1.17245 1.59671 1.16103 1.21043 0.80407 0.77658 0.90438 1.90681 1.50389 1.57748 1.40718 1.20303 0.95859 0.99991 0.95365 1.19068 0.92319 0.93304 1.11848 1.20425 0.95662 0.94650 0.98117 1.20323 0.92765 0.98585 1.14449 1.20591 0.96813 0.94093 0.98442 1.20997 0.96557 0.95874 1.11850 1.17477 0.90413 0.92494 0.88944 1.19409 1.07905 0.94046 1.25869 0.89298 1.26143 0.96193 0.94808 0.96187 1.69711 1.32310 1.09611 1.31904 0.86358 0.80457 0.81654 0.77970 1.19795 1.22032 1.16716 0.92657 0.92987 0.92855 0.92002 0.91566 0.91612 0.91828 0.92062 0.92184 0.91935 0.91916 0.92039 0.90822 0.77319 0.88294 0.90508 0.89163 0.89073 0.89068 0.88377 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.15 5.32 -26.73 -0.14 -1.30 16 3 C -0.09 -0.94 1.76 -90.62 -0.16 -1.10 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -1.02 4.96 -26.73 -0.13 -1.15 16 6 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.13 -1.88 5.49 -26.73 -0.15 -2.03 16 9 C 0.15 2.10 1.90 -67.93 -0.13 1.98 16 10 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 11 N -0.74 -10.87 4.31 -53.81 -0.23 -11.10 16 12 C 0.52 10.06 7.40 -10.99 -0.08 9.98 16 13 O -0.52 -12.57 15.70 5.56 0.09 -12.48 16 14 C -0.08 -1.45 5.19 -29.04 -0.15 -1.60 16 15 C -0.16 -3.81 4.43 -103.92 -0.46 -4.27 16 16 C -0.07 -1.54 9.66 -39.66 -0.38 -1.92 16 17 C -0.24 -5.31 10.05 -39.29 -0.39 -5.70 16 18 C -0.08 -1.87 10.02 -39.66 -0.40 -2.26 16 19 C -0.23 -5.93 7.17 -38.87 -0.28 -6.21 16 20 C 0.11 2.85 5.10 -106.83 -0.54 2.31 16 21 C -0.44 -12.06 8.55 -37.74 -0.32 -12.38 16 22 H 0.09 2.54 7.00 -52.49 -0.37 2.17 16 23 C 0.09 2.25 5.41 -17.34 -0.09 2.16 16 24 N -0.81 -21.85 13.93 55.55 0.77 -21.08 16 25 Si 0.91 21.14 24.52 -169.99 -4.17 16.98 16 26 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.24 -5.78 6.86 56.52 0.39 -5.39 16 29 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 34 H 0.07 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.39 4.65 8.40 -40.82 -0.34 4.30 16 43 H 0.10 1.90 7.13 -51.93 -0.37 1.53 16 44 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 45 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 47 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 48 H 0.10 2.49 4.77 -52.49 -0.25 2.24 16 49 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -30.69 378.46 -9.90 -40.59 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.29 Total: 8.55 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -3.78 Total: -27.16 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.54 Total: -32.18 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.17 Total: 16.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.69 -9.90 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776813708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds