Wall clock time and date at job start Tue Mar 31 2020 12:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47136 * 239.99949 * 2 1 3 5 5 C 1.52996 * 109.47208 * 299.99655 * 4 2 1 6 6 C 1.52998 * 109.47500 * 300.00427 * 5 4 2 7 7 C 1.52997 * 109.47241 * 59.99916 * 6 5 4 8 8 H 1.08995 * 109.47556 * 59.99859 * 7 6 5 9 9 C 1.52997 * 109.47023 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.46941 * 294.99401 * 9 7 6 11 11 C 1.34771 * 120.00315 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.47107 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12959 * 265.00302 * 14 13 11 16 16 C 1.38611 * 120.25102 * 180.02562 * 15 14 13 17 17 C 1.38653 * 120.50014 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24988 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12780 * 85.01596 * 14 13 11 20 20 C 1.41391 * 120.24285 * 0.02562 * 19 14 13 21 21 H 1.08000 * 119.99987 * 334.57123 * 20 19 14 22 22 C 1.39954 * 119.99954 * 154.57918 * 20 19 14 23 23 N 1.30823 * 119.99475 * 342.83256 * 22 20 19 24 24 Si 1.86798 * 119.99995 * 162.83714 * 22 20 19 25 25 H 1.48502 * 109.47275 * 94.64787 * 24 22 20 26 26 H 1.48502 * 109.47077 * 214.64758 * 24 22 20 27 27 H 1.48502 * 109.47129 * 334.64873 * 24 22 20 28 28 C 1.53003 * 109.46881 * 299.99927 * 7 6 5 29 29 H 1.09000 * 109.47446 * 299.99563 * 1 2 3 30 30 H 1.08994 * 109.47000 * 60.00141 * 1 2 3 31 31 H 1.09005 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46962 * 60.00518 * 4 2 1 33 33 H 1.09000 * 109.46883 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46925 * 60.00360 * 5 4 2 35 35 H 1.09005 * 109.47028 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.46474 * 299.99841 * 6 5 4 37 37 H 1.09005 * 109.47138 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47504 * 175.00157 * 9 7 6 39 39 H 1.09002 * 109.47663 * 54.99297 * 9 7 6 40 40 H 0.97007 * 119.99518 * 0.02562 * 10 9 7 41 41 H 1.08995 * 109.47195 * 60.00002 * 13 11 10 42 42 H 1.08996 * 109.47240 * 299.99434 * 13 11 10 43 43 H 1.08003 * 119.87035 * 359.74084 * 15 14 13 44 44 H 1.08002 * 119.74914 * 179.97438 * 16 15 14 45 45 H 1.08000 * 119.87701 * 180.02562 * 17 16 15 46 46 H 1.08000 * 120.12546 * 180.02562 * 18 17 16 47 47 H 0.97001 * 119.99342 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.47336 * 180.02562 * 28 7 6 49 49 H 1.09000 * 109.47363 * 300.00030 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0404 -2.8847 2.4984 10 7 1.4566 -4.2270 2.5604 11 6 1.7651 -5.0495 3.5825 12 8 2.5264 -4.6787 4.4507 13 6 1.1650 -6.4304 3.6459 14 6 1.6667 -7.1401 4.8771 15 6 2.7574 -7.9758 4.7966 16 6 3.2207 -8.6302 5.9273 17 6 2.5931 -8.4513 7.1506 18 6 1.5011 -7.6207 7.2546 19 6 1.0218 -6.9512 6.1132 20 6 -0.1000 -6.0958 6.2078 21 1 -0.2281 -5.2927 5.4972 22 6 -1.0444 -6.2898 7.2223 23 7 -1.0886 -7.4280 7.8657 24 14 -2.2417 -4.9236 7.6575 25 1 -3.5117 -5.1230 6.9141 26 1 -2.5132 -4.9498 9.1172 27 1 -1.6520 -3.6120 7.2870 28 6 2.0400 -0.7213 1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.4401 -2.1638 -1.2493 35 1 1.8931 -2.6775 -2.1395 36 1 3.1300 -2.8849 0.0000 37 1 1.6771 -3.9129 -0.0002 38 1 1.7520 -2.3218 3.3862 39 1 3.1268 -2.9627 2.4546 40 1 0.8480 -4.5237 1.8658 41 1 1.4542 -6.9933 2.7584 42 1 0.0787 -6.3529 3.6891 43 1 3.2514 -8.1257 3.8479 44 1 4.0769 -9.2845 5.8548 45 1 2.9627 -8.9659 8.0253 46 1 1.0140 -7.4825 8.2086 47 1 -1.7429 -7.5623 8.5691 48 1 1.6770 -0.2076 2.1394 49 1 3.1300 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776841264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:40 Heat of formation + Delta-G solvation = -57.871024 kcal Electronic energy + Delta-G solvation = -26313.374953 eV Core-core repulsion = 22817.090330 eV Total energy + Delta-G solvation = -3496.284623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.82998 -38.82119 -37.24286 -34.71066 -33.57471 -32.03811 -31.73187 -31.08290 -29.40058 -27.19316 -26.98481 -25.43285 -24.61170 -22.57188 -21.31464 -20.88096 -20.42479 -19.28531 -18.73885 -17.14103 -16.52653 -15.75024 -15.58499 -15.38732 -14.92281 -14.68576 -14.47984 -14.30346 -13.98912 -13.69634 -13.45626 -13.06658 -12.99434 -12.78590 -12.55082 -12.28013 -12.08827 -11.80469 -11.66057 -11.62127 -11.53000 -11.24677 -11.16464 -11.08529 -10.93172 -10.90953 -10.66331 -10.44471 -10.35501 -10.21675 -10.17495 -9.42918 -9.33028 -9.11326 -9.06120 -8.60294 -7.26068 -7.23774 -6.69804 -4.28782 2.82768 3.02802 3.09416 3.15253 3.31224 3.43825 3.75847 3.97337 4.43767 4.45426 4.48992 4.70691 4.88275 5.00208 5.06425 5.13088 5.18291 5.29208 5.38721 5.46382 5.53641 5.59987 5.63772 5.73577 5.76417 5.81973 5.85797 5.91852 5.96979 6.02124 6.05163 6.08993 6.12762 6.16581 6.26474 6.34091 6.34928 6.49079 6.56393 6.85419 6.89794 7.13389 7.35003 7.47785 7.69630 7.95544 8.03791 8.13697 8.18621 8.36936 8.70136 8.95741 8.97284 9.07144 10.24501 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.003332 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.034728 B = 8402.236556 C = 9844.862632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.099 4.099 8 H 0.079 0.921 9 C 0.125 3.875 10 N -0.745 5.745 11 C 0.513 3.487 12 O -0.522 6.522 13 C -0.071 4.071 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.161 4.161 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.901 3.099 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.107 4.107 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.394 0.606 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.279 0.721 48 H 0.065 0.935 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 11.238 -16.186 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.118 4.118 8 H 0.097 0.903 9 C 0.001 3.999 10 N -0.399 5.399 11 C 0.301 3.699 12 O -0.396 6.396 13 C -0.111 4.111 14 C -0.181 4.181 15 C -0.100 4.100 16 C -0.260 4.260 17 C -0.126 4.126 18 C -0.180 4.180 19 C 0.126 3.874 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.185 1.185 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.207 11.383 -15.336 19.137 hybrid contribution -0.854 0.446 -0.034 0.964 sum 0.353 11.829 -15.371 19.398 Atomic orbital electron populations 1.21955 0.95333 1.02252 1.01395 1.21078 0.95961 0.98953 0.94902 0.91387 1.21565 1.00519 0.95770 0.97347 1.21574 1.01017 0.95524 0.97753 1.21594 1.01003 0.98867 0.93702 1.21432 1.01122 0.95019 0.94216 0.90269 1.21268 0.98038 0.83391 0.97176 1.46148 1.50638 1.15358 1.27790 1.21211 0.81088 0.87332 0.80305 1.90677 1.35055 1.76235 1.37637 1.20266 1.01789 0.91075 0.97975 1.19053 1.01603 1.04306 0.93185 1.20298 0.95828 0.97524 0.96338 1.20297 1.03706 1.08008 0.93975 1.20665 0.96847 0.99236 0.95821 1.21281 0.96761 1.00966 0.98969 1.17334 0.90695 0.89683 0.89663 1.19471 1.04856 1.12848 1.11400 0.90795 1.25876 0.97918 0.95442 0.94755 1.69832 1.31299 1.22187 1.18735 0.86418 0.80162 0.82400 0.78478 1.19639 1.20034 1.18525 1.21534 1.00803 0.94486 0.97712 0.92764 0.93042 0.91901 0.92296 0.92079 0.91682 0.92208 0.91839 0.91801 0.91945 0.92118 0.77234 0.90730 0.88674 0.89809 0.89710 0.89624 0.86598 0.91024 0.91627 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.50 37.16 0.32 -0.82 16 2 C -0.09 -0.69 3.20 -90.62 -0.29 -0.97 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.82 5.45 -26.73 -0.15 -0.97 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.06 16 6 C -0.11 -0.99 5.08 -26.73 -0.14 -1.13 16 7 C -0.10 -0.95 1.95 -90.62 -0.18 -1.13 16 8 H 0.08 0.75 6.43 -51.93 -0.33 0.42 16 9 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 10 N -0.74 -10.91 5.28 -60.29 -0.32 -11.23 16 11 C 0.51 10.18 7.47 -10.99 -0.08 10.10 16 12 O -0.52 -12.85 16.03 5.56 0.09 -12.76 16 13 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 14 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 15 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 16 C -0.24 -5.73 10.05 -39.29 -0.39 -6.13 16 17 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 18 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 19 C 0.13 3.51 5.57 -106.83 -0.59 2.91 16 20 C -0.46 -12.20 8.15 -37.74 -0.31 -12.51 16 21 H 0.07 1.93 6.66 -52.49 -0.35 1.58 16 22 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 23 N -0.79 -20.79 10.98 55.55 0.61 -20.18 16 24 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 C -0.11 -0.94 4.73 -26.73 -0.13 -1.07 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 4.81 -51.93 -0.25 0.23 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.55 7.18 -51.93 -0.37 0.18 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.39 4.56 7.65 -40.82 -0.31 4.25 16 41 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 42 H 0.10 1.86 7.05 -51.93 -0.37 1.49 16 43 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.12 3.24 6.21 -52.49 -0.33 2.91 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -30.97 379.70 -10.97 -41.94 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.12 Total: 8.21 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -3.93 Total: -25.79 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.29 Total: -31.40 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.97 -10.97 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776841264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.929 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds