Wall clock time and date at job start Tue Mar 31 2020 12:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47136 * 239.99949 * 2 1 3 5 5 C 1.52996 * 109.47208 * 299.99655 * 4 2 1 6 6 C 1.52998 * 109.47500 * 300.00427 * 5 4 2 7 7 C 1.52997 * 109.47241 * 59.99916 * 6 5 4 8 8 H 1.08995 * 109.47556 * 59.99859 * 7 6 5 9 9 C 1.52997 * 109.47023 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.46941 * 294.99401 * 9 7 6 11 11 C 1.34771 * 120.00315 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.47107 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12959 * 265.00302 * 14 13 11 16 16 C 1.38611 * 120.25102 * 180.02562 * 15 14 13 17 17 C 1.38653 * 120.50014 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24988 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12780 * 85.01596 * 14 13 11 20 20 C 1.41391 * 120.24285 * 0.02562 * 19 14 13 21 21 H 1.08000 * 119.99987 * 334.57123 * 20 19 14 22 22 C 1.39954 * 119.99954 * 154.57918 * 20 19 14 23 23 N 1.30823 * 119.99475 * 342.83256 * 22 20 19 24 24 Si 1.86798 * 119.99995 * 162.83714 * 22 20 19 25 25 H 1.48502 * 109.47275 * 94.64787 * 24 22 20 26 26 H 1.48502 * 109.47077 * 214.64758 * 24 22 20 27 27 H 1.48502 * 109.47129 * 334.64873 * 24 22 20 28 28 C 1.53003 * 109.46881 * 299.99927 * 7 6 5 29 29 H 1.09000 * 109.47446 * 299.99563 * 1 2 3 30 30 H 1.08994 * 109.47000 * 60.00141 * 1 2 3 31 31 H 1.09005 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46962 * 60.00518 * 4 2 1 33 33 H 1.09000 * 109.46883 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46925 * 60.00360 * 5 4 2 35 35 H 1.09005 * 109.47028 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.46474 * 299.99841 * 6 5 4 37 37 H 1.09005 * 109.47138 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47504 * 175.00157 * 9 7 6 39 39 H 1.09002 * 109.47663 * 54.99297 * 9 7 6 40 40 H 0.97007 * 119.99518 * 0.02562 * 10 9 7 41 41 H 1.08995 * 109.47195 * 60.00002 * 13 11 10 42 42 H 1.08996 * 109.47240 * 299.99434 * 13 11 10 43 43 H 1.08003 * 119.87035 * 359.74084 * 15 14 13 44 44 H 1.08002 * 119.74914 * 179.97438 * 16 15 14 45 45 H 1.08000 * 119.87701 * 180.02562 * 17 16 15 46 46 H 1.08000 * 120.12546 * 180.02562 * 18 17 16 47 47 H 0.97001 * 119.99342 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.47336 * 180.02562 * 28 7 6 49 49 H 1.09000 * 109.47363 * 300.00030 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0404 -2.8847 2.4984 10 7 1.4566 -4.2270 2.5604 11 6 1.7651 -5.0495 3.5825 12 8 2.5264 -4.6787 4.4507 13 6 1.1650 -6.4304 3.6459 14 6 1.6667 -7.1401 4.8771 15 6 2.7574 -7.9758 4.7966 16 6 3.2207 -8.6302 5.9273 17 6 2.5931 -8.4513 7.1506 18 6 1.5011 -7.6207 7.2546 19 6 1.0218 -6.9512 6.1132 20 6 -0.1000 -6.0958 6.2078 21 1 -0.2281 -5.2927 5.4972 22 6 -1.0444 -6.2898 7.2223 23 7 -1.0886 -7.4280 7.8657 24 14 -2.2417 -4.9236 7.6575 25 1 -3.5117 -5.1230 6.9141 26 1 -2.5132 -4.9498 9.1172 27 1 -1.6520 -3.6120 7.2870 28 6 2.0400 -0.7213 1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.4401 -2.1638 -1.2493 35 1 1.8931 -2.6775 -2.1395 36 1 3.1300 -2.8849 0.0000 37 1 1.6771 -3.9129 -0.0002 38 1 1.7520 -2.3218 3.3862 39 1 3.1268 -2.9627 2.4546 40 1 0.8480 -4.5237 1.8658 41 1 1.4542 -6.9933 2.7584 42 1 0.0787 -6.3529 3.6891 43 1 3.2514 -8.1257 3.8479 44 1 4.0769 -9.2845 5.8548 45 1 2.9627 -8.9659 8.0253 46 1 1.0140 -7.4825 8.2086 47 1 -1.7429 -7.5623 8.5691 48 1 1.6770 -0.2076 2.1394 49 1 3.1300 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776841264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:39 Heat of formation + Delta-G solvation = -73.718710 kcal Electronic energy + Delta-G solvation = -26314.062160 eV Core-core repulsion = 22817.090330 eV Total energy + Delta-G solvation = -3496.971830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96182 -40.05414 -39.01859 -35.93917 -35.49754 -33.54389 -32.65338 -32.10961 -31.33195 -28.77557 -27.61153 -27.08238 -26.04403 -23.23518 -22.82468 -22.32795 -21.88080 -20.91068 -19.44946 -19.06876 -17.87719 -17.33404 -16.95902 -16.55469 -16.18767 -16.14810 -15.61571 -15.36712 -15.28145 -15.00131 -14.68038 -14.43050 -14.37921 -14.19295 -13.55771 -13.48629 -13.37128 -13.20183 -12.92001 -12.87121 -12.74241 -12.59682 -12.48901 -12.43550 -12.35780 -12.13162 -11.87572 -11.79574 -11.31516 -11.21868 -11.14004 -11.01045 -10.94851 -10.85160 -10.65675 -9.96614 -9.22707 -9.15305 -8.59964 -6.28429 1.00139 1.14053 1.35167 1.46833 1.53580 1.87195 2.19788 2.42373 2.78923 3.67687 3.76703 3.77271 3.82646 4.16558 4.18264 4.29597 4.34635 4.41628 4.48556 4.50309 4.51600 4.59648 4.63247 4.68586 4.71614 4.73554 4.81720 4.86159 4.91659 5.01703 5.07278 5.08538 5.15773 5.20123 5.20540 5.31582 5.32373 5.37272 5.40959 5.48092 5.49348 5.55703 5.61824 5.69323 5.78300 6.04695 6.17568 6.22132 6.42785 6.69488 6.76864 6.99828 7.12178 7.48661 8.36781 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.003332 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.034728 B = 8402.236556 C = 9844.862632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.087 4.087 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.722 5.722 11 C 0.515 3.485 12 O -0.578 6.578 13 C -0.070 4.070 14 C -0.187 4.187 15 C -0.092 4.092 16 C -0.244 4.244 17 C -0.118 4.118 18 C -0.196 4.196 19 C 0.095 3.905 20 C -0.483 4.483 21 H 0.071 0.929 22 C 0.037 3.963 23 N -0.825 5.825 24 Si 0.970 3.030 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.108 4.108 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.413 0.587 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.286 0.714 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 11.931 -18.665 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.105 4.105 8 H 0.103 0.897 9 C 0.002 3.998 10 N -0.376 5.376 11 C 0.302 3.698 12 O -0.457 6.457 13 C -0.109 4.109 14 C -0.189 4.189 15 C -0.110 4.110 16 C -0.263 4.263 17 C -0.136 4.136 18 C -0.215 4.215 19 C 0.093 3.907 20 C -0.513 4.513 21 H 0.089 0.911 22 C -0.178 4.178 23 N -0.452 5.452 24 Si 0.792 3.208 25 H -0.178 1.178 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.146 4.146 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.249 0.751 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.680 12.070 -17.874 21.578 hybrid contribution -0.605 0.191 0.684 0.933 sum 0.074 12.261 -17.190 21.114 Atomic orbital electron populations 1.21953 0.95090 1.02216 1.01655 1.21062 0.96106 0.99110 0.94312 0.90843 1.21567 1.00476 0.95644 0.97424 1.21554 1.01268 0.95519 0.97185 1.21585 1.00670 0.99044 0.93725 1.21349 1.01299 0.95148 0.92753 0.89673 1.21355 0.97560 0.82497 0.98369 1.45914 1.49791 1.15207 1.26650 1.21153 0.80389 0.87710 0.80500 1.90658 1.37805 1.77262 1.39968 1.20285 1.01713 0.91385 0.97554 1.19550 1.01335 1.04024 0.93973 1.20747 0.95588 0.96884 0.97811 1.20717 1.04175 1.07901 0.93504 1.20944 0.96342 0.98906 0.97394 1.21297 0.98391 1.03257 0.98570 1.17743 0.91673 0.90454 0.90841 1.19622 1.05681 1.13275 1.12720 0.91115 1.26666 0.99419 0.97486 0.94192 1.69888 1.32267 1.23774 1.19234 0.85374 0.78251 0.78631 0.78579 1.17848 1.19247 1.19268 1.21541 1.00716 0.93960 0.98372 0.93227 0.92124 0.92049 0.91252 0.92208 0.91216 0.91411 0.92420 0.91545 0.93945 0.93047 0.75057 0.86901 0.88500 0.86534 0.86686 0.87696 0.88590 0.90348 0.92237 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.50 71.98 0.61 -1.33 16 2 C -0.09 -1.15 3.20 -10.79 -0.03 -1.19 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.35 5.45 30.59 0.17 -1.18 16 5 C -0.12 -1.44 5.65 30.59 0.17 -1.27 16 6 C -0.11 -1.71 5.08 30.59 0.16 -1.56 16 7 C -0.09 -1.54 1.95 -10.79 -0.02 -1.56 16 8 H 0.09 1.45 6.43 -2.39 -0.02 1.43 16 9 C 0.13 3.29 5.06 86.38 0.44 3.72 16 10 N -0.72 -20.30 5.28 -463.05 -2.45 -22.74 16 11 C 0.51 20.19 7.47 87.66 0.65 20.84 16 12 O -0.58 -28.99 16.03 -3.03 -0.05 -29.04 16 13 C -0.07 -2.70 5.18 29.10 0.15 -2.55 16 14 C -0.19 -9.18 4.43 -19.40 -0.09 -9.26 16 15 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16 16 C -0.24 -11.36 10.05 22.46 0.23 -11.13 16 17 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 18 C -0.20 -11.07 8.69 22.73 0.20 -10.87 16 19 C 0.10 5.33 5.57 -21.29 -0.12 5.21 16 20 C -0.48 -26.60 8.15 23.46 0.19 -26.41 16 21 H 0.07 3.79 6.66 -2.91 -0.02 3.77 16 22 C 0.04 1.92 5.15 85.26 0.44 2.35 16 23 N -0.83 -44.38 10.98 21.83 0.24 -44.14 16 24 Si 0.97 39.67 29.59 68.60 2.03 41.70 16 25 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C -0.11 -1.77 4.73 30.60 0.14 -1.62 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.80 4.81 -2.38 -0.01 0.79 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.98 7.18 -2.38 -0.02 0.96 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.41 8.61 7.65 -92.70 -0.71 7.90 16 41 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 42 H 0.10 3.71 7.05 -2.39 -0.02 3.70 16 43 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16 47 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.37 379.70 3.72 -65.64 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.23 Total: 36.11 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.72 Total: -47.54 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -2.21 Total: -66.88 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -69.37 3.72 -65.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776841264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.074 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds