Wall clock time and date at job start Tue Mar 31 2020 12:37:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47285 * 2 1
4 4 C 1.53003 * 109.47136 * 239.99949 * 2 1 3
5 5 C 1.52996 * 109.47208 * 299.99655 * 4 2 1
6 6 C 1.52998 * 109.47500 * 300.00427 * 5 4 2
7 7 C 1.52997 * 109.47241 * 59.99916 * 6 5 4
8 8 H 1.08995 * 109.47556 * 59.99859 * 7 6 5
9 9 C 1.52997 * 109.47023 * 180.02562 * 7 6 5
10 10 N 1.46508 * 109.46941 * 294.99401 * 9 7 6
11 11 C 1.34771 * 120.00315 * 180.02562 * 10 9 7
12 12 O 1.21280 * 119.99900 * 359.97438 * 11 10 9
13 13 C 1.50699 * 120.00007 * 180.02562 * 11 10 9
14 14 C 1.50702 * 109.47107 * 180.02562 * 13 11 10
15 15 C 1.37641 * 120.12959 * 265.00302 * 14 13 11
16 16 C 1.38611 * 120.25102 * 180.02562 * 15 14 13
17 17 C 1.38653 * 120.50014 * 359.97438 * 16 15 14
18 18 C 1.37597 * 120.24988 * 0.02562 * 17 16 15
19 19 C 1.40699 * 120.12780 * 85.01596 * 14 13 11
20 20 C 1.41391 * 120.24285 * 0.02562 * 19 14 13
21 21 H 1.08000 * 119.99987 * 334.57123 * 20 19 14
22 22 C 1.39954 * 119.99954 * 154.57918 * 20 19 14
23 23 N 1.30823 * 119.99475 * 342.83256 * 22 20 19
24 24 Si 1.86798 * 119.99995 * 162.83714 * 22 20 19
25 25 H 1.48502 * 109.47275 * 94.64787 * 24 22 20
26 26 H 1.48502 * 109.47077 * 214.64758 * 24 22 20
27 27 H 1.48502 * 109.47129 * 334.64873 * 24 22 20
28 28 C 1.53003 * 109.46881 * 299.99927 * 7 6 5
29 29 H 1.09000 * 109.47446 * 299.99563 * 1 2 3
30 30 H 1.08994 * 109.47000 * 60.00141 * 1 2 3
31 31 H 1.09005 * 109.46876 * 179.97438 * 1 2 3
32 32 H 1.08992 * 109.46962 * 60.00518 * 4 2 1
33 33 H 1.09000 * 109.46883 * 179.97438 * 4 2 1
34 34 H 1.09000 * 109.46925 * 60.00360 * 5 4 2
35 35 H 1.09005 * 109.47028 * 179.97438 * 5 4 2
36 36 H 1.09003 * 109.46474 * 299.99841 * 6 5 4
37 37 H 1.09005 * 109.47138 * 180.02562 * 6 5 4
38 38 H 1.09001 * 109.47504 * 175.00157 * 9 7 6
39 39 H 1.09002 * 109.47663 * 54.99297 * 9 7 6
40 40 H 0.97007 * 119.99518 * 0.02562 * 10 9 7
41 41 H 1.08995 * 109.47195 * 60.00002 * 13 11 10
42 42 H 1.08996 * 109.47240 * 299.99434 * 13 11 10
43 43 H 1.08003 * 119.87035 * 359.74084 * 15 14 13
44 44 H 1.08002 * 119.74914 * 179.97438 * 16 15 14
45 45 H 1.08000 * 119.87701 * 180.02562 * 17 16 15
46 46 H 1.08000 * 120.12546 * 180.02562 * 18 17 16
47 47 H 0.97001 * 119.99342 * 179.97438 * 23 22 20
48 48 H 1.08999 * 109.47336 * 180.02562 * 28 7 6
49 49 H 1.09000 * 109.47363 * 300.00030 * 28 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 1.5301 -2.1638 -1.2492
6 6 2.0400 -2.8850 0.0000
7 6 1.5299 -2.1638 1.2492
8 1 0.4400 -2.1638 1.2492
9 6 2.0404 -2.8847 2.4984
10 7 1.4566 -4.2270 2.5604
11 6 1.7651 -5.0495 3.5825
12 8 2.5264 -4.6787 4.4507
13 6 1.1650 -6.4304 3.6459
14 6 1.6667 -7.1401 4.8771
15 6 2.7574 -7.9758 4.7966
16 6 3.2207 -8.6302 5.9273
17 6 2.5931 -8.4513 7.1506
18 6 1.5011 -7.6207 7.2546
19 6 1.0218 -6.9512 6.1132
20 6 -0.1000 -6.0958 6.2078
21 1 -0.2281 -5.2927 5.4972
22 6 -1.0444 -6.2898 7.2223
23 7 -1.0886 -7.4280 7.8657
24 14 -2.2417 -4.9236 7.6575
25 1 -3.5117 -5.1230 6.9141
26 1 -2.5132 -4.9498 9.1172
27 1 -1.6520 -3.6120 7.2870
28 6 2.0400 -0.7213 1.2492
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.6767 -0.2074 -2.1392
33 1 3.1300 -0.7209 -1.2494
34 1 0.4401 -2.1638 -1.2493
35 1 1.8931 -2.6775 -2.1395
36 1 3.1300 -2.8849 0.0000
37 1 1.6771 -3.9129 -0.0002
38 1 1.7520 -2.3218 3.3862
39 1 3.1268 -2.9627 2.4546
40 1 0.8480 -4.5237 1.8658
41 1 1.4542 -6.9933 2.7584
42 1 0.0787 -6.3529 3.6891
43 1 3.2514 -8.1257 3.8479
44 1 4.0769 -9.2845 5.8548
45 1 2.9627 -8.9659 8.0253
46 1 1.0140 -7.4825 8.2086
47 1 -1.7429 -7.5623 8.5691
48 1 1.6770 -0.2076 2.1394
49 1 3.1300 -0.7213 1.2493
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000776841264.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:39
Heat of formation + Delta-G solvation = -73.718710 kcal
Electronic energy + Delta-G solvation = -26314.062160 eV
Core-core repulsion = 22817.090330 eV
Total energy + Delta-G solvation = -3496.971830 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.96182 -40.05414 -39.01859 -35.93917 -35.49754 -33.54389 -32.65338 -32.10961
-31.33195 -28.77557 -27.61153 -27.08238 -26.04403 -23.23518 -22.82468 -22.32795
-21.88080 -20.91068 -19.44946 -19.06876 -17.87719 -17.33404 -16.95902 -16.55469
-16.18767 -16.14810 -15.61571 -15.36712 -15.28145 -15.00131 -14.68038 -14.43050
-14.37921 -14.19295 -13.55771 -13.48629 -13.37128 -13.20183 -12.92001 -12.87121
-12.74241 -12.59682 -12.48901 -12.43550 -12.35780 -12.13162 -11.87572 -11.79574
-11.31516 -11.21868 -11.14004 -11.01045 -10.94851 -10.85160 -10.65675 -9.96614
-9.22707 -9.15305 -8.59964 -6.28429 1.00139 1.14053 1.35167 1.46833
1.53580 1.87195 2.19788 2.42373 2.78923 3.67687 3.76703 3.77271
3.82646 4.16558 4.18264 4.29597 4.34635 4.41628 4.48556 4.50309
4.51600 4.59648 4.63247 4.68586 4.71614 4.73554 4.81720 4.86159
4.91659 5.01703 5.07278 5.08538 5.15773 5.20123 5.20540 5.31582
5.32373 5.37272 5.40959 5.48092 5.49348 5.55703 5.61824 5.69323
5.78300 6.04695 6.17568 6.22132 6.42785 6.69488 6.76864 6.99828
7.12178 7.48661 8.36781
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.014370 B = 0.003332 C = 0.002843
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1948.034728 B = 8402.236556 C = 9844.862632
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.087 4.087
3 H 0.073 0.927
4 C -0.114 4.114
5 C -0.118 4.118
6 C -0.113 4.113
7 C -0.087 4.087
8 H 0.085 0.915
9 C 0.126 3.874
10 N -0.722 5.722
11 C 0.515 3.485
12 O -0.578 6.578
13 C -0.070 4.070
14 C -0.187 4.187
15 C -0.092 4.092
16 C -0.244 4.244
17 C -0.118 4.118
18 C -0.196 4.196
19 C 0.095 3.905
20 C -0.483 4.483
21 H 0.071 0.929
22 C 0.037 3.963
23 N -0.825 5.825
24 Si 0.970 3.030
25 H -0.254 1.254
26 H -0.268 1.268
27 H -0.268 1.268
28 C -0.108 4.108
29 H 0.049 0.951
30 H 0.060 0.940
31 H 0.061 0.939
32 H 0.069 0.931
33 H 0.059 0.941
34 H 0.069 0.931
35 H 0.067 0.933
36 H 0.057 0.943
37 H 0.066 0.934
38 H 0.042 0.958
39 H 0.051 0.949
40 H 0.413 0.587
41 H 0.113 0.887
42 H 0.097 0.903
43 H 0.117 0.883
44 H 0.115 0.885
45 H 0.105 0.895
46 H 0.096 0.904
47 H 0.286 0.714
48 H 0.059 0.941
49 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.272 11.931 -18.665 22.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.106 4.106
3 H 0.092 0.908
4 C -0.151 4.151
5 C -0.155 4.155
6 C -0.150 4.150
7 C -0.105 4.105
8 H 0.103 0.897
9 C 0.002 3.998
10 N -0.376 5.376
11 C 0.302 3.698
12 O -0.457 6.457
13 C -0.109 4.109
14 C -0.189 4.189
15 C -0.110 4.110
16 C -0.263 4.263
17 C -0.136 4.136
18 C -0.215 4.215
19 C 0.093 3.907
20 C -0.513 4.513
21 H 0.089 0.911
22 C -0.178 4.178
23 N -0.452 5.452
24 Si 0.792 3.208
25 H -0.178 1.178
26 H -0.192 1.192
27 H -0.193 1.193
28 C -0.146 4.146
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.087 0.913
33 H 0.078 0.922
34 H 0.088 0.912
35 H 0.086 0.914
36 H 0.076 0.924
37 H 0.085 0.915
38 H 0.061 0.939
39 H 0.070 0.930
40 H 0.249 0.751
41 H 0.131 0.869
42 H 0.115 0.885
43 H 0.135 0.865
44 H 0.133 0.867
45 H 0.123 0.877
46 H 0.114 0.886
47 H 0.097 0.903
48 H 0.078 0.922
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.680 12.070 -17.874 21.578
hybrid contribution -0.605 0.191 0.684 0.933
sum 0.074 12.261 -17.190 21.114
Atomic orbital electron populations
1.21953 0.95090 1.02216 1.01655 1.21062 0.96106 0.99110 0.94312
0.90843 1.21567 1.00476 0.95644 0.97424 1.21554 1.01268 0.95519
0.97185 1.21585 1.00670 0.99044 0.93725 1.21349 1.01299 0.95148
0.92753 0.89673 1.21355 0.97560 0.82497 0.98369 1.45914 1.49791
1.15207 1.26650 1.21153 0.80389 0.87710 0.80500 1.90658 1.37805
1.77262 1.39968 1.20285 1.01713 0.91385 0.97554 1.19550 1.01335
1.04024 0.93973 1.20747 0.95588 0.96884 0.97811 1.20717 1.04175
1.07901 0.93504 1.20944 0.96342 0.98906 0.97394 1.21297 0.98391
1.03257 0.98570 1.17743 0.91673 0.90454 0.90841 1.19622 1.05681
1.13275 1.12720 0.91115 1.26666 0.99419 0.97486 0.94192 1.69888
1.32267 1.23774 1.19234 0.85374 0.78251 0.78631 0.78579 1.17848
1.19247 1.19268 1.21541 1.00716 0.93960 0.98372 0.93227 0.92124
0.92049 0.91252 0.92208 0.91216 0.91411 0.92420 0.91545 0.93945
0.93047 0.75057 0.86901 0.88500 0.86534 0.86686 0.87696 0.88590
0.90348 0.92237 0.91905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.94 8.50 71.98 0.61 -1.33 16
2 C -0.09 -1.15 3.20 -10.79 -0.03 -1.19 16
3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
4 C -0.11 -1.35 5.45 30.59 0.17 -1.18 16
5 C -0.12 -1.44 5.65 30.59 0.17 -1.27 16
6 C -0.11 -1.71 5.08 30.59 0.16 -1.56 16
7 C -0.09 -1.54 1.95 -10.79 -0.02 -1.56 16
8 H 0.09 1.45 6.43 -2.39 -0.02 1.43 16
9 C 0.13 3.29 5.06 86.38 0.44 3.72 16
10 N -0.72 -20.30 5.28 -463.05 -2.45 -22.74 16
11 C 0.51 20.19 7.47 87.66 0.65 20.84 16
12 O -0.58 -28.99 16.03 -3.03 -0.05 -29.04 16
13 C -0.07 -2.70 5.18 29.10 0.15 -2.55 16
14 C -0.19 -9.18 4.43 -19.40 -0.09 -9.26 16
15 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16
16 C -0.24 -11.36 10.05 22.46 0.23 -11.13 16
17 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16
18 C -0.20 -11.07 8.69 22.73 0.20 -10.87 16
19 C 0.10 5.33 5.57 -21.29 -0.12 5.21 16
20 C -0.48 -26.60 8.15 23.46 0.19 -26.41 16
21 H 0.07 3.79 6.66 -2.91 -0.02 3.77 16
22 C 0.04 1.92 5.15 85.26 0.44 2.35 16
23 N -0.83 -44.38 10.98 21.83 0.24 -44.14 16
24 Si 0.97 39.67 29.59 68.60 2.03 41.70 16
25 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16
26 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16
27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
28 C -0.11 -1.77 4.73 30.60 0.14 -1.62 16
29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.06 0.80 4.81 -2.38 -0.01 0.79 16
32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
34 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16
35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
37 H 0.07 0.98 7.18 -2.38 -0.02 0.96 16
38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
40 H 0.41 8.61 7.65 -92.70 -0.71 7.90 16
41 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16
42 H 0.10 3.71 7.05 -2.39 -0.02 3.70 16
43 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16
44 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16
45 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16
46 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16
47 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16
48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
Total: -1.00 -69.37 379.70 3.72 -65.64
By element:
Atomic # 1 Polarization: 35.89 SS G_CDS: 0.23 Total: 36.11 kcal
Atomic # 6 Polarization: -51.26 SS G_CDS: 3.72 Total: -47.54 kcal
Atomic # 7 Polarization: -64.67 SS G_CDS: -2.21 Total: -66.88 kcal
Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal
Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal
Total: -69.37 3.72 -65.64 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776841264.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.074 kcal
(2) G-P(sol) polarization free energy of solvation -69.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds