Wall clock time and date at job start Tue Mar 31 2020 12:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47313 * 239.99592 * 2 1 3 5 5 C 1.53004 * 109.47313 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47028 * 59.99996 * 5 4 2 7 7 C 1.53001 * 109.47371 * 300.00115 * 6 5 4 8 8 C 1.53004 * 109.47139 * 59.99953 * 7 6 5 9 9 H 1.08998 * 109.46925 * 59.99846 * 8 7 6 10 10 C 1.52995 * 109.47313 * 180.02562 * 8 7 6 11 11 N 1.46509 * 109.46745 * 295.00194 * 10 8 7 12 12 C 1.34778 * 119.99882 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99828 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00139 * 180.27131 * 12 11 10 15 15 C 1.50702 * 109.47245 * 179.72302 * 14 12 11 16 16 C 1.37641 * 120.12305 * 264.73032 * 15 14 12 17 17 C 1.38620 * 120.24131 * 179.70072 * 16 15 14 18 18 C 1.38657 * 120.50242 * 0.59902 * 17 16 15 19 19 C 1.37601 * 120.24751 * 359.67672 * 18 17 16 20 20 C 1.40698 * 120.12560 * 84.99917 * 15 14 12 21 21 C 1.41387 * 120.24478 * 0.02817 * 20 15 14 22 22 H 1.08004 * 120.00033 * 334.57979 * 21 20 15 23 23 C 1.39951 * 119.99991 * 154.57919 * 21 20 15 24 24 N 1.30819 * 119.99921 * 342.83831 * 23 21 20 25 25 Si 1.86799 * 120.00121 * 162.83719 * 23 21 20 26 26 H 1.48498 * 109.47151 * 94.64590 * 25 23 21 27 27 H 1.48494 * 109.47206 * 214.65121 * 25 23 21 28 28 H 1.48507 * 109.47021 * 334.65213 * 25 23 21 29 29 H 1.09000 * 109.46875 * 299.99709 * 1 2 3 30 30 H 1.08991 * 109.46957 * 60.00521 * 1 2 3 31 31 H 1.08999 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46872 * 59.99904 * 4 2 1 33 33 H 1.08998 * 109.47458 * 300.00082 * 4 2 1 34 34 H 1.08999 * 109.46777 * 299.99876 * 5 4 2 35 35 H 1.08993 * 109.47119 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.46974 * 179.97438 * 6 5 4 37 37 H 1.09007 * 109.46835 * 60.00199 * 6 5 4 38 38 H 1.08999 * 109.46978 * 300.00454 * 7 6 5 39 39 H 1.08994 * 109.47000 * 180.02562 * 7 6 5 40 40 H 1.08993 * 109.47259 * 175.00549 * 10 8 7 41 41 H 1.09000 * 109.46965 * 54.99571 * 10 8 7 42 42 H 0.96993 * 120.00349 * 359.97438 * 11 10 8 43 43 H 1.08997 * 109.47188 * 299.72588 * 14 12 11 44 44 H 1.09003 * 109.47055 * 59.72353 * 14 12 11 45 45 H 1.07995 * 119.88268 * 359.97438 * 16 15 14 46 46 H 1.07997 * 119.74938 * 180.29439 * 17 16 15 47 47 H 1.07997 * 119.87509 * 179.70125 * 18 17 16 48 48 H 1.08001 * 120.12782 * 180.02562 * 19 18 17 49 49 H 0.96996 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0395 -0.7215 1.2494 9 1 1.6758 -1.7491 1.2491 10 6 1.5295 0.0003 2.4982 11 7 1.9166 -0.7562 3.6917 12 6 1.5725 -0.3073 4.9150 13 8 0.9427 0.7231 5.0279 14 6 1.9759 -1.0821 6.1430 15 6 1.4777 -0.3686 7.3734 16 6 2.3062 0.4941 8.0546 17 6 1.8485 1.1564 9.1831 18 6 0.5579 0.9493 9.6457 19 6 -0.2858 0.0871 8.9837 20 6 0.1660 -0.5860 7.8333 21 6 -0.6918 -1.4747 7.1452 22 1 -0.5370 -1.6695 6.0942 23 6 -1.7415 -2.1019 7.8259 24 7 -1.7403 -2.1443 9.1334 25 14 -3.1443 -2.8784 6.8675 26 1 -2.8688 -4.3243 6.6710 27 1 -4.4114 -2.7143 7.6243 28 1 -3.2679 -2.2139 5.5452 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 1.6768 -1.7490 -1.2491 34 1 3.9337 0.3057 -1.2487 35 1 3.9334 -1.2353 -2.1389 36 1 5.1695 -1.4442 0.0004 37 1 3.7158 -2.4710 0.0002 38 1 3.9332 0.3054 1.2498 39 1 3.9329 -1.2359 2.1396 40 1 0.4433 0.0788 2.4543 41 1 1.9645 0.9987 2.5439 42 1 2.4199 -1.5804 3.6014 43 1 1.5416 -2.0809 6.1013 44 1 3.0624 -1.1597 6.1829 45 1 3.3150 0.6589 7.7062 46 1 2.5037 1.8351 9.7087 47 1 0.2134 1.4670 10.5287 48 1 -1.2908 -0.0724 9.3455 49 1 -2.4676 -2.5793 9.6052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776855105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:58 Heat of formation + Delta-G solvation = -59.739678 kcal Electronic energy + Delta-G solvation = -26396.946718 eV Core-core repulsion = 22900.581064 eV Total energy + Delta-G solvation = -3496.365654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.76263 -38.70513 -37.21344 -34.45852 -33.57467 -32.90055 -31.76247 -30.87164 -29.40045 -27.44770 -26.49346 -25.30785 -24.62750 -21.99580 -21.14366 -20.88020 -20.43695 -19.93332 -19.13832 -17.13501 -16.39774 -15.78635 -15.39035 -15.13655 -15.01479 -14.64864 -14.48983 -14.29236 -14.07499 -13.67872 -13.41681 -13.19876 -12.86236 -12.67029 -12.53719 -12.23002 -11.97399 -11.93173 -11.69185 -11.65076 -11.52897 -11.21135 -11.09100 -11.08011 -10.93478 -10.91443 -10.65835 -10.61579 -10.35604 -10.24023 -10.12689 -9.42885 -9.33049 -9.11259 -9.05904 -8.58252 -7.26051 -7.23619 -6.69750 -4.28672 2.82820 3.02874 3.09422 3.15212 3.31233 3.44023 3.75883 3.97346 4.41181 4.47183 4.52850 4.70767 4.87686 4.93219 5.10376 5.19727 5.25418 5.27099 5.35542 5.51092 5.54091 5.60272 5.67069 5.76330 5.80853 5.84077 5.89115 5.89419 5.96265 6.02557 6.04008 6.09151 6.11955 6.21551 6.28200 6.34242 6.35334 6.49164 6.56458 6.85490 6.90469 7.13432 7.35061 7.47840 7.69690 7.95701 8.03971 8.13813 8.18673 8.37000 8.70210 8.95942 8.97420 9.07223 10.24583 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003453 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.000595 B = 8107.877022 C = 9431.921293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.123 3.877 11 N -0.745 5.745 12 C 0.513 3.487 13 O -0.522 6.522 14 C -0.071 4.071 15 C -0.179 4.179 16 C -0.082 4.082 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.161 4.161 20 C 0.129 3.871 21 C -0.456 4.456 22 H 0.074 0.926 23 C 0.077 3.923 24 N -0.795 5.795 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.394 0.606 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -1.526 -17.604 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.112 4.112 9 H 0.094 0.906 10 C -0.001 4.001 11 N -0.399 5.399 12 C 0.301 3.699 13 O -0.396 6.396 14 C -0.111 4.111 15 C -0.181 4.181 16 C -0.100 4.100 17 C -0.260 4.260 18 C -0.126 4.126 19 C -0.180 4.180 20 C 0.126 3.874 21 C -0.486 4.486 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.421 5.421 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.227 0.773 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.130 -0.849 -17.305 18.736 hybrid contribution -0.456 -0.769 -0.389 0.975 sum 6.674 -1.618 -17.694 18.980 Atomic orbital electron populations 1.21944 0.95051 1.02084 1.02076 1.21070 0.95645 0.99591 0.93850 0.91009 1.21586 0.95381 1.00711 0.97364 1.21541 0.95777 1.00734 0.97717 1.21536 1.00084 0.99431 0.94630 1.21603 0.94789 1.01108 0.97760 1.21428 0.95625 1.00170 0.93947 0.90566 1.21364 1.00169 0.95146 0.83439 1.46154 1.59872 1.28016 1.05902 1.21206 0.78667 0.85928 0.84121 1.90677 1.38170 1.24321 1.86442 1.20265 1.00051 0.99901 0.90892 1.19046 0.95057 1.05426 0.98595 1.20298 0.97080 0.96840 0.95783 1.20299 0.97120 1.07352 1.01211 1.20666 0.94487 0.98871 0.98545 1.21282 0.99592 0.98418 0.98692 1.17332 0.89651 0.89504 0.90881 1.19469 1.09997 1.22224 0.96876 0.90794 1.25873 0.98388 0.94993 0.94730 1.69826 1.30363 1.33751 1.08120 0.86421 0.80571 0.79485 0.80998 1.19641 1.20037 1.18519 0.91838 0.92780 0.92618 0.92059 0.91975 0.92072 0.92278 0.92136 0.92020 0.91802 0.91716 0.91469 0.92170 0.77256 0.88688 0.90736 0.89811 0.89716 0.89627 0.86598 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.85 37.16 0.33 -1.11 16 2 C -0.08 -0.73 2.25 -90.62 -0.20 -0.94 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.02 16 6 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 7 C -0.12 -1.01 5.08 -26.73 -0.14 -1.14 16 8 C -0.09 -0.90 1.75 -90.62 -0.16 -1.06 16 9 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 10 C 0.12 1.63 4.85 -4.04 -0.02 1.61 16 11 N -0.74 -10.94 5.28 -60.29 -0.32 -11.26 16 12 C 0.51 10.18 7.47 -10.99 -0.08 10.10 16 13 O -0.52 -12.83 16.03 5.55 0.09 -12.74 16 14 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 15 C -0.18 -4.40 4.43 -103.91 -0.46 -4.87 16 16 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 17 C -0.24 -5.73 10.05 -39.29 -0.39 -6.13 16 18 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 19 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 20 C 0.13 3.51 5.57 -106.83 -0.59 2.91 16 21 C -0.46 -12.19 8.15 -37.74 -0.31 -12.50 16 22 H 0.07 1.93 6.66 -52.48 -0.35 1.58 16 23 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 24 N -0.79 -20.79 10.98 55.55 0.61 -20.18 16 25 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 29 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 7.18 -51.93 -0.37 0.19 16 40 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.39 4.58 7.66 -40.82 -0.31 4.27 16 43 H 0.09 1.86 7.05 -51.93 -0.37 1.49 16 44 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 45 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.12 3.24 6.21 -52.49 -0.33 2.91 16 49 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -30.89 382.87 -10.99 -41.88 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.27 Total: 8.45 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.84 Total: -25.99 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.29 Total: -31.43 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.89 -10.99 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776855105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds